Wall clock time and date at job start Mon Mar 30 2020 02:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47432 * 2 1 4 4 C 1.53002 * 109.47180 * 120.00035 * 2 1 3 5 5 C 1.50703 * 109.47384 * 184.99633 * 4 2 1 6 6 H 1.08004 * 119.99659 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00124 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99890 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 119.99905 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47229 * 60.00229 * 9 7 5 11 11 H 1.48506 * 109.47051 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47333 * 300.00353 * 9 7 5 13 13 N 1.46905 * 109.46987 * 239.99600 * 2 1 3 14 14 C 1.46901 * 110.99444 * 85.00518 * 13 2 1 15 15 H 1.09003 * 110.05493 * 324.96194 * 14 13 2 16 16 C 1.54377 * 110.07320 * 86.45407 * 14 13 2 17 17 C 1.54929 * 104.22452 * 142.78949 * 16 14 13 18 18 C 1.54991 * 102.98147 * 322.18216 * 17 16 14 19 19 C 1.53482 * 110.06839 * 203.42303 * 14 13 2 20 20 C 1.52574 * 121.05178 * 96.55501 * 19 14 13 21 21 C 1.52549 * 121.08659 * 24.84368 * 19 14 13 22 22 H 1.09008 * 109.47388 * 300.00035 * 1 2 3 23 23 H 1.09003 * 109.47615 * 59.99781 * 1 2 3 24 24 H 1.09002 * 109.47432 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47060 * 305.00083 * 4 2 1 26 26 H 1.09008 * 109.46819 * 64.99642 * 4 2 1 27 27 H 0.96998 * 119.99742 * 179.97438 * 8 7 5 28 28 H 1.00898 * 111.00031 * 321.05068 * 13 2 1 29 29 H 1.08999 * 110.48655 * 24.10095 * 16 14 13 30 30 H 1.09001 * 110.48282 * 261.47362 * 16 14 13 31 31 H 1.09002 * 110.74439 * 80.60756 * 17 16 14 32 32 H 1.08995 * 110.74658 * 203.76186 * 17 16 14 33 33 H 1.08999 * 110.50828 * 156.30584 * 18 17 16 34 34 H 1.08998 * 110.51269 * 279.01899 * 18 17 16 35 35 H 1.08993 * 117.51418 * 356.97809 * 20 19 14 36 36 H 1.08999 * 117.50780 * 142.06532 * 20 19 14 37 37 H 1.09000 * 117.51107 * 217.88688 * 21 19 14 38 38 H 1.08997 * 117.51256 * 2.96512 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3127 6 1 4.0789 -0.0856 0.5396 7 6 4.2303 -1.1928 2.3583 8 7 3.5763 -1.8370 3.3000 9 14 6.0919 -1.0604 2.4373 10 1 6.4844 0.3706 2.4966 11 1 6.5869 -1.7606 3.6498 12 1 6.6844 -1.6865 1.2282 13 7 2.0196 -0.6926 -1.1994 14 6 2.0824 0.2225 -2.3468 15 1 1.2607 0.9373 -2.3004 16 6 3.4338 0.9688 -2.3560 17 6 3.8004 1.0739 -3.8576 18 6 3.3241 -0.2861 -4.4284 19 6 2.0172 -0.5720 -3.6584 20 6 0.6980 -0.7558 -4.4024 21 6 1.3641 -1.9495 -3.7132 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.6053 -0.2617 2.1370 26 1 1.7515 -1.7716 1.2056 27 1 4.0606 -2.2438 4.0354 28 1 1.4494 -1.4980 -1.4100 29 1 4.1894 0.3962 -1.8181 30 1 3.3242 1.9616 -1.9198 31 1 3.2659 1.8988 -4.3287 32 1 4.8766 1.1904 -3.9851 33 1 3.1315 -0.2049 -5.4981 34 1 4.0624 -1.0631 -4.2302 35 1 -0.2010 -0.3459 -3.9422 36 1 0.7256 -0.7237 -5.4916 37 1 1.8296 -2.7025 -4.3490 38 1 0.9031 -2.3249 -2.7996 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706921309.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:51 Heat of formation + Delta-G solvation = -10.442201 kcal Electronic energy + Delta-G solvation = -15944.567821 eV Core-core repulsion = 13593.001858 eV Total energy + Delta-G solvation = -2351.565963 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.52030 -37.38970 -34.97943 -34.55199 -31.57228 -29.15668 -27.70311 -25.81928 -24.88768 -23.34546 -21.96027 -20.78780 -19.51477 -18.35122 -16.83457 -16.74756 -16.34485 -15.96884 -15.38670 -14.77918 -14.60378 -13.98641 -13.69113 -13.50918 -13.43549 -13.22705 -12.97406 -12.61951 -12.46212 -12.34679 -12.16947 -11.90960 -11.86742 -11.51900 -11.46854 -11.11866 -11.09089 -11.01192 -10.60835 -10.46863 -8.93908 -8.08486 -6.12740 1.40466 1.43816 1.51040 2.47814 2.85329 3.24187 3.50700 3.56671 3.79339 3.97488 4.11748 4.22956 4.35516 4.40971 4.45418 4.54738 4.56996 4.79281 4.80727 4.86851 4.97522 5.00955 5.08521 5.14426 5.18011 5.22232 5.24765 5.27902 5.31284 5.37776 5.51607 5.56890 5.73107 5.91350 6.38119 6.56484 6.79125 7.00950 7.52371 9.03783 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.027410 B = 0.008279 C = 0.007126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.291105 B = 3381.382041 C = 3928.496906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.099 3.901 3 H 0.055 0.945 4 C 0.039 3.961 5 C -0.495 4.495 6 H 0.057 0.943 7 C -0.008 4.008 8 N -0.942 5.942 9 Si 0.956 3.044 10 H -0.270 1.270 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.674 5.674 14 C 0.119 3.881 15 H 0.039 0.961 16 C -0.117 4.117 17 C -0.113 4.113 18 C -0.080 4.080 19 C -0.140 4.140 20 C -0.153 4.153 21 C -0.173 4.173 22 H 0.056 0.944 23 H 0.062 0.938 24 H 0.051 0.949 25 H -0.010 1.010 26 H -0.012 1.012 27 H 0.258 0.742 28 H 0.333 0.667 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.053 4.200 -16.874 17.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.011 4.011 3 H 0.073 0.927 4 C 0.002 3.998 5 C -0.533 4.533 6 H 0.076 0.924 7 C -0.204 4.204 8 N -0.585 5.585 9 Si 0.782 3.218 10 H -0.195 1.195 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.306 5.306 14 C 0.010 3.990 15 H 0.057 0.943 16 C -0.155 4.155 17 C -0.151 4.151 18 C -0.117 4.117 19 C -0.140 4.140 20 C -0.190 4.190 21 C -0.211 4.211 22 H 0.075 0.925 23 H 0.081 0.919 24 H 0.070 0.930 25 H 0.008 0.992 26 H 0.006 0.994 27 H 0.067 0.933 28 H 0.155 0.845 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.131 0.869 37 H 0.123 0.877 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.361 4.192 -16.546 17.397 hybrid contribution -0.075 -0.159 0.683 0.706 sum -3.436 4.032 -15.863 16.724 Atomic orbital electron populations 1.22420 0.97064 1.01592 1.01771 1.21471 0.91775 0.96770 0.91079 0.92664 1.18975 0.95258 0.93984 0.91593 1.21460 0.93299 1.32154 1.06416 0.92450 1.25871 1.02894 0.95784 0.95817 1.70093 1.37112 1.38180 1.13099 0.85642 0.80649 0.78356 0.77190 1.19488 1.21233 1.19784 1.60610 1.58090 1.09168 1.02773 1.21584 0.96553 0.92795 0.88118 0.94284 1.22418 0.96893 0.98846 0.97337 1.22414 1.01124 0.97573 0.93992 1.21889 0.93928 0.96996 0.98883 1.22017 0.95412 0.99697 0.96923 1.23056 0.94703 1.01237 1.00025 1.22894 1.04165 0.91511 1.02517 0.92505 0.91949 0.92997 0.99190 0.99359 0.93334 0.84549 0.92959 0.92717 0.90337 0.90986 0.89795 0.92153 0.89062 0.86860 0.87742 0.89694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.77 9.15 71.98 0.66 -5.11 16 2 C 0.10 4.13 2.37 44.91 0.11 4.24 16 3 H 0.06 2.38 7.73 -2.39 -0.02 2.36 16 4 C 0.04 2.12 4.65 29.85 0.14 2.26 16 5 C -0.49 -28.89 8.84 25.60 0.23 -28.66 16 6 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 7 C -0.01 -0.49 5.46 84.65 0.46 -0.02 16 8 N -0.94 -59.32 13.29 21.45 0.28 -59.04 16 9 Si 0.96 46.56 29.54 68.60 2.03 48.59 16 10 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 12 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 13 N -0.67 -25.75 5.72 -466.24 -2.67 -28.42 16 14 C 0.12 3.72 2.89 45.54 0.13 3.85 16 15 H 0.04 1.20 7.17 -2.39 -0.02 1.18 16 16 C -0.12 -3.70 6.34 31.72 0.20 -3.50 16 17 C -0.11 -2.68 6.89 31.93 0.22 -2.46 16 18 C -0.08 -1.82 6.62 31.74 0.21 -1.61 16 19 C -0.14 -3.55 2.36 -51.85 -0.12 -3.67 16 20 C -0.15 -3.10 10.24 30.48 0.31 -2.78 16 21 C -0.17 -4.12 9.66 30.47 0.29 -3.83 16 22 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 23 H 0.06 1.80 7.45 -2.39 -0.02 1.78 16 24 H 0.05 1.73 8.13 -2.39 -0.02 1.71 16 25 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 26 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 27 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 28 H 0.33 12.10 5.71 -89.70 -0.51 11.59 16 29 H 0.05 2.01 8.05 -2.39 -0.02 1.99 16 30 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.08 1.51 8.11 -2.39 -0.02 1.49 16 34 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.09 1.82 8.14 -2.39 -0.02 1.81 16 36 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.08 2.21 6.28 -2.39 -0.01 2.20 16 Total: -1.00 -65.35 301.45 2.98 -62.37 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.49 Total: 17.79 kcal Atomic # 6 Polarization: -44.13 SS G_CDS: 2.84 Total: -41.29 kcal Atomic # 7 Polarization: -85.08 SS G_CDS: -2.38 Total: -87.46 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -65.35 2.98 -62.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706921309.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.929 kcal (2) G-P(sol) polarization free energy of solvation -65.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds