Wall clock time and date at job start Mon Mar 30 2020 02:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46691 * 2 1 4 4 C 1.50691 * 109.46944 * 120.00001 * 2 1 3 5 5 H 1.08000 * 120.00496 * 114.49036 * 4 2 1 6 6 C 1.37880 * 120.00244 * 294.48444 * 4 2 1 7 7 N 1.31508 * 120.00343 * 164.79867 * 6 4 2 8 8 Si 1.86805 * 120.00000 * 344.80314 * 6 4 2 9 9 H 1.48493 * 109.47157 * 269.99977 * 8 6 4 10 10 H 1.48510 * 109.46797 * 29.99585 * 8 6 4 11 11 H 1.48501 * 109.47174 * 149.99531 * 8 6 4 12 12 N 1.46899 * 109.47093 * 240.00197 * 2 1 3 13 13 C 1.46904 * 111.00372 * 84.99917 * 12 2 1 14 14 C 1.52998 * 109.47090 * 179.97438 * 13 12 2 15 15 H 1.08995 * 110.05435 * 304.96706 * 14 13 12 16 16 C 1.54380 * 110.06862 * 66.45665 * 14 13 12 17 17 C 1.54926 * 104.22355 * 142.78139 * 16 14 13 18 18 C 1.54991 * 102.81936 * 322.27450 * 17 16 14 19 19 C 1.53485 * 110.06593 * 183.42133 * 14 13 12 20 20 C 1.52569 * 121.04692 * 96.57213 * 19 14 13 21 21 C 1.52549 * 121.08788 * 24.86254 * 19 14 13 22 22 H 1.09002 * 109.47128 * 53.54002 * 1 2 3 23 23 H 1.09001 * 109.47164 * 173.53279 * 1 2 3 24 24 H 1.08994 * 109.47265 * 293.53251 * 1 2 3 25 25 H 0.97006 * 120.00009 * 354.91092 * 7 6 4 26 26 H 1.00903 * 110.99794 * 321.04571 * 12 2 1 27 27 H 1.09004 * 109.46880 * 300.00132 * 13 12 2 28 28 H 1.08997 * 109.46785 * 59.99496 * 13 12 2 29 29 H 1.09009 * 110.48138 * 261.46314 * 16 14 13 30 30 H 1.09000 * 110.48474 * 24.09186 * 16 14 13 31 31 H 1.08999 * 110.74815 * 80.61168 * 17 16 14 32 32 H 1.09001 * 110.74126 * 203.76257 * 17 16 14 33 33 H 1.08993 * 110.51020 * 156.21720 * 18 17 16 34 34 H 1.08999 * 110.51638 * 278.93272 * 18 17 16 35 35 H 1.09000 * 117.51703 * 356.96762 * 20 19 14 36 36 H 1.09001 * 117.51218 * 142.05948 * 20 19 14 37 37 H 1.09003 * 117.50575 * 217.88424 * 21 19 14 38 38 H 1.09001 * 117.51350 * 2.91743 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5778 -1.6374 1.1339 6 6 1.7955 -0.1768 2.4795 7 7 1.9583 -0.9186 3.5531 8 14 1.2433 1.5999 2.6469 9 1 2.4339 2.4788 2.7703 10 1 0.4621 1.9906 1.4458 11 1 0.3949 1.7427 3.8573 12 7 2.0197 -0.6924 -1.1994 13 6 2.0825 0.2226 -2.3470 14 6 2.5962 -0.5329 -3.5742 15 1 3.5527 -1.0046 -3.3493 16 6 1.5683 -1.5998 -4.0082 17 6 1.6314 -1.5818 -5.5560 18 6 1.8171 -0.0765 -5.8752 19 6 2.7483 0.4299 -4.7598 20 6 4.0972 1.0594 -5.0943 21 6 2.9627 1.9240 -4.5387 22 1 -0.3633 0.6107 -0.8265 23 1 -0.3633 -1.0211 -0.1158 24 1 -0.3633 0.4103 0.9421 25 1 2.1729 -1.8604 3.4640 26 1 1.4495 -1.4979 -1.4100 27 1 1.0870 0.6163 -2.5526 28 1 2.7588 1.0462 -2.1182 29 1 1.8521 -2.5805 -3.6263 30 1 0.5699 -1.3298 -3.6640 31 1 2.4828 -2.1604 -5.9145 32 1 0.7027 -1.9584 -5.9847 33 1 2.2851 0.0521 -6.8511 34 1 0.8595 0.4428 -5.8384 35 1 4.9338 0.8395 -4.4311 36 1 4.3504 1.1772 -6.1479 37 1 2.4695 2.6106 -5.2268 38 1 3.0523 2.2730 -3.5100 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707004726.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:22 Heat of formation + Delta-G solvation = 5.780280 kcal Electronic energy + Delta-G solvation = -15722.376927 eV Core-core repulsion = 13371.514423 eV Total energy + Delta-G solvation = -2350.862503 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.48598 -36.05695 -34.07224 -32.53916 -30.48951 -27.55203 -25.80980 -24.66526 -23.06417 -22.15666 -20.56204 -19.71465 -18.25745 -17.35461 -15.79360 -15.18669 -14.86209 -14.42583 -14.04227 -13.60771 -13.04753 -12.82288 -12.60312 -12.19735 -11.92056 -11.70721 -11.62661 -11.35152 -11.10537 -10.97612 -10.61045 -10.49667 -10.48050 -10.15699 -10.12002 -10.03146 -9.57198 -9.46068 -8.84261 -8.22755 -7.35443 -6.34994 -3.95647 3.43657 3.45328 3.60372 3.80741 4.45551 4.55255 4.67468 4.85980 4.91388 5.20054 5.26349 5.29752 5.33790 5.56523 5.61919 5.68205 5.75911 5.82906 5.87546 5.92169 6.05527 6.10663 6.14716 6.17312 6.24672 6.30591 6.32731 6.42696 6.53139 6.60429 6.68868 6.91556 7.23200 7.88246 8.34623 8.43449 8.53439 9.08613 9.71600 11.02785 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.039725 B = 0.006593 C = 0.006200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.678885 B = 4246.129815 C = 4515.327580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.187 3.813 3 H 0.026 0.974 4 C -0.580 4.580 5 H 0.062 0.938 6 C 0.027 3.973 7 N -0.913 5.913 8 Si 1.042 2.958 9 H -0.287 1.287 10 H -0.274 1.274 11 H -0.287 1.287 12 N -0.675 5.675 13 C 0.066 3.934 14 C -0.054 4.054 15 H 0.080 0.920 16 C -0.118 4.118 17 C -0.121 4.121 18 C -0.087 4.087 19 C -0.123 4.123 20 C -0.171 4.171 21 C -0.174 4.174 22 H 0.019 0.981 23 H 0.042 0.958 24 H 0.054 0.946 25 H 0.267 0.733 26 H 0.327 0.673 27 H 0.018 0.982 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.809 2.958 -18.452 18.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.078 3.922 3 H 0.043 0.957 4 C -0.618 4.618 5 H 0.080 0.920 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.871 3.129 9 H -0.214 1.214 10 H -0.200 1.200 11 H -0.213 1.213 12 N -0.305 5.305 13 C -0.064 4.064 14 C -0.073 4.073 15 H 0.098 0.902 16 C -0.156 4.156 17 C -0.159 4.159 18 C -0.124 4.124 19 C -0.123 4.123 20 C -0.208 4.208 21 C -0.211 4.211 22 H 0.038 0.962 23 H 0.062 0.938 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.144 0.856 27 H 0.037 0.963 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.497 4.216 -17.154 17.672 hybrid contribution -0.591 -1.021 -1.281 1.741 sum -1.088 3.195 -18.435 18.742 Atomic orbital electron populations 1.22842 1.01330 0.99551 0.99618 1.19546 0.88844 0.94549 0.89246 0.95653 1.22009 1.38629 1.10891 0.90272 0.91982 1.25679 0.94764 1.05217 0.92068 1.70793 1.45043 1.08251 1.30677 0.84136 0.77060 0.76011 0.75699 1.21386 1.20019 1.21307 1.60729 1.57861 1.08918 1.02991 1.22026 0.98172 0.95714 0.90460 1.21261 0.99545 0.94189 0.92308 0.90188 1.22413 0.99145 0.99111 0.94905 1.22452 1.01174 0.95869 0.96401 1.21858 0.98357 0.95835 0.96371 1.21770 0.98325 0.94396 0.97817 1.22963 0.92141 1.04444 1.01205 1.22972 1.02675 0.93007 1.02425 0.96213 0.93850 0.92739 0.92265 0.85581 0.96348 0.91855 0.91323 0.91804 0.91611 0.91865 0.92070 0.91497 0.88754 0.89239 0.89217 0.88307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.88 8.46 37.16 0.31 -3.57 16 2 C 0.19 4.55 2.12 -68.87 -0.15 4.41 16 3 H 0.03 0.64 6.43 -51.93 -0.33 0.30 16 4 C -0.58 -16.70 9.12 -34.44 -0.31 -17.01 16 5 H 0.06 1.95 8.06 -52.49 -0.42 1.53 16 6 C 0.03 0.79 5.33 -17.82 -0.09 0.69 16 7 N -0.91 -28.57 13.69 55.43 0.76 -27.81 16 8 Si 1.04 25.59 26.17 -169.99 -4.45 21.14 16 9 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.27 -6.19 5.54 56.52 0.31 -5.87 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 12 N -0.68 -14.28 6.23 -107.95 -0.67 -14.95 16 13 C 0.07 1.16 4.28 -3.82 -0.02 1.14 16 14 C -0.05 -0.79 3.03 -89.65 -0.27 -1.06 16 15 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 16 C -0.12 -1.54 5.51 -24.99 -0.14 -1.68 16 17 C -0.12 -1.31 6.91 -24.66 -0.17 -1.48 16 18 C -0.09 -0.94 6.58 -25.23 -0.17 -1.11 16 19 C -0.12 -1.53 2.26 -154.25 -0.35 -1.87 16 20 C -0.17 -1.95 10.23 -26.91 -0.28 -2.22 16 21 C -0.17 -2.09 9.62 -26.92 -0.26 -2.35 16 22 H 0.02 0.38 7.63 -51.93 -0.40 -0.01 16 23 H 0.04 0.93 8.01 -51.93 -0.42 0.52 16 24 H 0.05 1.26 5.06 -51.93 -0.26 0.99 16 25 H 0.27 8.35 8.73 -40.82 -0.36 8.00 16 26 H 0.33 6.59 7.57 -39.29 -0.30 6.29 16 27 H 0.02 0.32 7.47 -51.93 -0.39 -0.06 16 28 H 0.06 1.15 6.45 -51.93 -0.34 0.82 16 29 H 0.07 0.90 8.14 -51.92 -0.42 0.47 16 30 H 0.06 0.87 7.79 -51.93 -0.40 0.46 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.59 8.11 -51.93 -0.42 0.17 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.10 1.29 6.44 -51.93 -0.33 0.96 16 LS Contribution 292.18 15.07 4.40 4.40 Total: -1.00 -30.14 292.18 -8.48 -38.62 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -6.63 Total: 4.72 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: -1.89 Total: -26.12 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 0.09 Total: -42.76 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -4.45 Total: 21.14 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.14 -8.48 -38.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707004726.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.398 kcal (2) G-P(sol) polarization free energy of solvation -30.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds