Wall clock time and date at job start Mon Mar 30 2020 02:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46691 * 2 1 4 4 C 1.50691 * 109.46944 * 120.00001 * 2 1 3 5 5 H 1.08000 * 120.00496 * 114.49036 * 4 2 1 6 6 C 1.37880 * 120.00244 * 294.48444 * 4 2 1 7 7 N 1.31508 * 120.00343 * 164.79867 * 6 4 2 8 8 Si 1.86805 * 120.00000 * 344.80314 * 6 4 2 9 9 H 1.48493 * 109.47157 * 269.99977 * 8 6 4 10 10 H 1.48510 * 109.46797 * 29.99585 * 8 6 4 11 11 H 1.48501 * 109.47174 * 149.99531 * 8 6 4 12 12 N 1.46899 * 109.47093 * 240.00197 * 2 1 3 13 13 C 1.46904 * 111.00372 * 84.99917 * 12 2 1 14 14 C 1.52998 * 109.47090 * 179.97438 * 13 12 2 15 15 H 1.08995 * 110.05435 * 304.96706 * 14 13 12 16 16 C 1.54380 * 110.06862 * 66.45665 * 14 13 12 17 17 C 1.54926 * 104.22355 * 142.78139 * 16 14 13 18 18 C 1.54991 * 102.81936 * 322.27450 * 17 16 14 19 19 C 1.53485 * 110.06593 * 183.42133 * 14 13 12 20 20 C 1.52569 * 121.04692 * 96.57213 * 19 14 13 21 21 C 1.52549 * 121.08788 * 24.86254 * 19 14 13 22 22 H 1.09002 * 109.47128 * 53.54002 * 1 2 3 23 23 H 1.09001 * 109.47164 * 173.53279 * 1 2 3 24 24 H 1.08994 * 109.47265 * 293.53251 * 1 2 3 25 25 H 0.97006 * 120.00009 * 354.91092 * 7 6 4 26 26 H 1.00903 * 110.99794 * 321.04571 * 12 2 1 27 27 H 1.09004 * 109.46880 * 300.00132 * 13 12 2 28 28 H 1.08997 * 109.46785 * 59.99496 * 13 12 2 29 29 H 1.09009 * 110.48138 * 261.46314 * 16 14 13 30 30 H 1.09000 * 110.48474 * 24.09186 * 16 14 13 31 31 H 1.08999 * 110.74815 * 80.61168 * 17 16 14 32 32 H 1.09001 * 110.74126 * 203.76257 * 17 16 14 33 33 H 1.08993 * 110.51020 * 156.21720 * 18 17 16 34 34 H 1.08999 * 110.51638 * 278.93272 * 18 17 16 35 35 H 1.09000 * 117.51703 * 356.96762 * 20 19 14 36 36 H 1.09001 * 117.51218 * 142.05948 * 20 19 14 37 37 H 1.09003 * 117.50575 * 217.88424 * 21 19 14 38 38 H 1.09001 * 117.51350 * 2.91743 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5778 -1.6374 1.1339 6 6 1.7955 -0.1768 2.4795 7 7 1.9583 -0.9186 3.5531 8 14 1.2433 1.5999 2.6469 9 1 2.4339 2.4788 2.7703 10 1 0.4621 1.9906 1.4458 11 1 0.3949 1.7427 3.8573 12 7 2.0197 -0.6924 -1.1994 13 6 2.0825 0.2226 -2.3470 14 6 2.5962 -0.5329 -3.5742 15 1 3.5527 -1.0046 -3.3493 16 6 1.5683 -1.5998 -4.0082 17 6 1.6314 -1.5818 -5.5560 18 6 1.8171 -0.0765 -5.8752 19 6 2.7483 0.4299 -4.7598 20 6 4.0972 1.0594 -5.0943 21 6 2.9627 1.9240 -4.5387 22 1 -0.3633 0.6107 -0.8265 23 1 -0.3633 -1.0211 -0.1158 24 1 -0.3633 0.4103 0.9421 25 1 2.1729 -1.8604 3.4640 26 1 1.4495 -1.4979 -1.4100 27 1 1.0870 0.6163 -2.5526 28 1 2.7588 1.0462 -2.1182 29 1 1.8521 -2.5805 -3.6263 30 1 0.5699 -1.3298 -3.6640 31 1 2.4828 -2.1604 -5.9145 32 1 0.7027 -1.9584 -5.9847 33 1 2.2851 0.0521 -6.8511 34 1 0.8595 0.4428 -5.8384 35 1 4.9338 0.8395 -4.4311 36 1 4.3504 1.1772 -6.1479 37 1 2.4695 2.6106 -5.2268 38 1 3.0523 2.2730 -3.5100 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707004726.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:22 Heat of formation + Delta-G solvation = -13.154236 kcal Electronic energy + Delta-G solvation = -15723.197989 eV Core-core repulsion = 13371.514423 eV Total energy + Delta-G solvation = -2351.683566 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.52821 -37.76919 -35.17547 -34.47469 -32.11114 -28.97175 -26.92892 -26.68768 -24.29046 -23.15002 -22.05177 -21.18700 -19.74445 -19.11538 -17.01019 -16.37401 -16.10499 -16.00473 -15.44017 -15.19630 -14.69139 -14.18533 -13.92721 -13.68955 -13.35244 -13.24024 -13.18512 -12.83386 -12.45751 -12.27259 -11.97289 -11.86684 -11.61866 -11.48831 -11.47360 -11.31045 -11.07658 -11.03653 -10.51063 -10.43365 -9.09859 -8.66569 -6.31806 1.45980 1.51445 1.69370 2.50357 2.85884 3.08330 3.40484 3.63939 3.74995 3.97396 4.07317 4.24605 4.30978 4.43118 4.47057 4.52291 4.60426 4.66822 4.74091 4.80499 4.87004 4.93145 4.95355 4.98752 5.05322 5.12740 5.18102 5.21996 5.29478 5.36852 5.40741 5.42459 5.50189 5.87429 6.08453 6.42391 6.72611 6.78286 7.46083 8.66523 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.039725 B = 0.006593 C = 0.006200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.678885 B = 4246.129815 C = 4515.327580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.189 3.811 3 H 0.026 0.974 4 C -0.584 4.584 5 H 0.017 0.983 6 C -0.025 4.025 7 N -0.944 5.944 8 Si 1.085 2.915 9 H -0.277 1.277 10 H -0.240 1.240 11 H -0.285 1.285 12 N -0.690 5.690 13 C 0.072 3.928 14 C -0.052 4.052 15 H 0.061 0.939 16 C -0.119 4.119 17 C -0.115 4.115 18 C -0.082 4.082 19 C -0.131 4.131 20 C -0.164 4.164 21 C -0.176 4.176 22 H 0.050 0.950 23 H 0.043 0.957 24 H 0.047 0.953 25 H 0.251 0.749 26 H 0.332 0.668 27 H 0.025 0.975 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.811 4.625 -21.012 21.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.079 3.921 3 H 0.043 0.957 4 C -0.623 4.623 5 H 0.036 0.964 6 C -0.222 4.222 7 N -0.581 5.581 8 Si 0.906 3.094 9 H -0.203 1.203 10 H -0.163 1.163 11 H -0.211 1.211 12 N -0.320 5.320 13 C -0.057 4.057 14 C -0.071 4.071 15 H 0.079 0.921 16 C -0.157 4.157 17 C -0.153 4.153 18 C -0.119 4.119 19 C -0.132 4.132 20 C -0.201 4.201 21 C -0.213 4.213 22 H 0.069 0.931 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.149 0.851 27 H 0.043 0.957 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.492 5.865 -19.752 20.658 hybrid contribution -0.193 -1.638 -0.500 1.723 sum -1.685 4.227 -20.252 20.757 Atomic orbital electron populations 1.22689 0.99274 1.00313 1.00456 1.19371 0.90270 0.93850 0.88637 0.95660 1.22226 1.37797 1.09456 0.92809 0.96417 1.27177 0.94371 1.08912 0.91756 1.70928 1.47697 1.07639 1.31838 0.83623 0.77595 0.71023 0.77163 1.20268 1.16324 1.21111 1.60566 1.58053 1.09758 1.03596 1.22033 0.98399 0.95103 0.90160 1.21187 0.98913 0.94925 0.92063 0.92055 1.22398 0.98207 0.98113 0.96971 1.22438 1.02264 0.96294 0.94266 1.21861 0.98190 0.95418 0.96439 1.21791 0.99699 0.94215 0.97482 1.23024 0.91393 1.03457 1.02230 1.23006 1.03199 0.92986 1.02112 0.93142 0.93801 0.93449 0.94018 0.85091 0.95659 0.92784 0.92021 0.92232 0.91111 0.90285 0.90274 0.91111 0.89748 0.87087 0.87426 0.89847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.13 8.46 71.98 0.61 -6.52 16 2 C 0.19 9.03 2.12 44.17 0.09 9.12 16 3 H 0.03 1.23 6.43 -2.39 -0.02 1.21 16 4 C -0.58 -34.43 9.12 25.60 0.23 -34.19 16 5 H 0.02 1.16 8.06 -2.91 -0.02 1.14 16 6 C -0.03 -1.50 5.33 84.66 0.45 -1.05 16 7 N -0.94 -60.82 13.69 21.45 0.29 -60.53 16 8 Si 1.08 50.81 26.17 68.60 1.80 52.61 16 9 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 10 H -0.24 -9.81 5.54 99.48 0.55 -9.26 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 12 N -0.69 -29.03 6.23 -495.46 -3.09 -32.12 16 13 C 0.07 2.45 4.28 86.30 0.37 2.82 16 14 C -0.05 -1.46 3.03 -10.16 -0.03 -1.49 16 15 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 16 C -0.12 -2.93 5.51 31.72 0.17 -2.76 16 17 C -0.12 -2.16 6.91 31.93 0.22 -1.94 16 18 C -0.08 -1.50 6.58 31.57 0.21 -1.29 16 19 C -0.13 -2.96 2.26 -52.02 -0.12 -3.08 16 20 C -0.16 -3.37 10.23 30.48 0.31 -3.06 16 21 C -0.18 -3.83 9.62 30.47 0.29 -3.53 16 22 H 0.05 1.82 7.63 -2.39 -0.02 1.80 16 23 H 0.04 1.82 8.01 -2.39 -0.02 1.80 16 24 H 0.05 2.06 5.06 -2.39 -0.01 2.05 16 25 H 0.25 16.46 8.73 -92.70 -0.81 15.65 16 26 H 0.33 13.33 7.57 -89.69 -0.68 12.65 16 27 H 0.03 0.83 7.47 -2.39 -0.02 0.81 16 28 H 0.05 1.92 6.45 -2.39 -0.02 1.91 16 29 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.06 1.51 7.79 -2.39 -0.02 1.49 16 31 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.08 1.19 8.11 -2.39 -0.02 1.17 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.08 2.07 6.44 -2.39 -0.02 2.05 16 Total: -1.00 -66.00 292.18 1.96 -64.04 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 0.15 Total: 22.98 kcal Atomic # 6 Polarization: -49.79 SS G_CDS: 2.82 Total: -46.97 kcal Atomic # 7 Polarization: -89.85 SS G_CDS: -2.79 Total: -92.65 kcal Atomic # 14 Polarization: 50.81 SS G_CDS: 1.80 Total: 52.61 kcal Total: -66.00 1.96 -64.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707004726.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.885 kcal (2) G-P(sol) polarization free energy of solvation -66.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds