Wall clock time and date at job start Mon Mar 30 2020 03:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46907 * 110.99842 * 2 1 4 4 C 1.50700 * 109.46972 * 66.04111 * 3 2 1 5 5 H 1.08002 * 119.99933 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00072 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99531 * 0.02562 * 6 4 3 8 8 Si 1.86788 * 120.00242 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.47482 * 90.00305 * 8 6 4 10 10 H 1.48501 * 109.47224 * 209.99871 * 8 6 4 11 11 H 1.48500 * 109.47213 * 329.99769 * 8 6 4 12 12 C 1.46892 * 111.00397 * 236.04222 * 2 1 3 13 13 H 1.09001 * 110.56323 * 176.50236 * 12 2 1 14 14 C 1.55918 * 110.50520 * 53.84119 * 12 2 1 15 15 C 1.56252 * 105.93327 * 247.96217 * 14 12 2 16 16 C 1.51728 * 101.91669 * 25.21819 * 15 14 12 17 17 H 1.09003 * 110.89737 * 72.83130 * 16 15 14 18 18 C 1.51736 * 122.52536 * 206.95596 * 16 15 14 19 19 C 1.56248 * 101.92313 * 153.03682 * 18 16 15 20 20 C 1.55918 * 105.86752 * 334.75013 * 19 18 16 21 21 C 1.49969 * 104.08753 * 353.42236 * 20 19 18 22 22 H 1.08997 * 108.49647 * 281.22522 * 21 20 19 23 23 H 1.08998 * 109.47056 * 197.95644 * 1 2 3 24 24 H 1.08996 * 109.47334 * 317.95731 * 1 2 3 25 25 H 1.08998 * 109.46659 * 77.96208 * 1 2 3 26 26 H 1.08998 * 109.46778 * 186.04344 * 3 2 1 27 27 H 1.08996 * 109.46918 * 306.04726 * 3 2 1 28 28 H 0.97004 * 119.99943 * 179.97438 * 7 6 4 29 29 H 1.08996 * 110.17137 * 128.82726 * 14 12 2 30 30 H 1.08999 * 110.17429 * 7.09969 * 14 12 2 31 31 H 1.09001 * 110.94021 * 143.36679 * 15 14 12 32 32 H 1.08999 * 110.94477 * 267.02239 * 15 14 12 33 33 H 1.09004 * 110.93796 * 271.19054 * 18 16 15 34 34 H 1.08993 * 110.94061 * 34.84076 * 18 16 15 35 35 H 1.09005 * 110.17318 * 93.84505 * 19 18 16 36 36 H 1.08993 * 110.17360 * 215.65123 * 19 18 16 37 37 H 1.09009 * 110.50736 * 112.07450 * 20 19 18 38 38 H 1.09000 * 110.50529 * 234.62902 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0744 1.5113 2.0487 6 6 2.0275 3.3492 1.5289 7 7 2.7127 4.0016 0.6154 8 14 1.5836 4.1866 3.1385 9 1 2.6604 3.9496 4.1333 10 1 1.4318 5.6463 2.9118 11 1 0.3056 3.6297 3.6502 12 6 1.9955 -0.7660 -1.1374 13 1 3.0837 -0.7100 -1.1658 14 6 1.3869 -0.2453 -2.4752 15 6 0.4677 -1.3931 -3.0036 16 6 0.1143 -2.1262 -1.7231 17 1 -0.5893 -1.5470 -1.1251 18 6 -0.2410 -3.6012 -1.6989 19 6 0.1785 -4.0105 -0.2505 20 6 1.2809 -2.9943 0.1773 21 6 1.5432 -2.1959 -1.0648 22 1 2.1828 -2.7824 -1.7243 23 1 -0.3633 -0.9776 0.3168 24 1 -0.3634 0.7632 0.6882 25 1 -0.3632 0.2143 -1.0051 26 1 3.0797 1.3444 -0.1082 27 1 1.5611 1.9274 -0.8309 28 1 2.9873 4.9178 0.7773 29 1 2.1801 -0.0381 -3.1935 30 1 0.7987 0.6546 -2.2954 31 1 -0.4253 -0.9888 -3.4802 32 1 1.0116 -2.0438 -3.6883 33 1 -1.3106 -3.7467 -1.8505 34 1 0.3344 -4.1527 -2.4423 35 1 -0.6767 -3.9425 0.4219 36 1 0.5800 -5.0238 -0.2477 37 1 0.9160 -2.3488 0.9762 38 1 2.1822 -3.5194 0.4937 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707930967.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:18 Heat of formation + Delta-G solvation = 9.688623 kcal Electronic energy + Delta-G solvation = -16328.939924 eV Core-core repulsion = 13978.246899 eV Total energy + Delta-G solvation = -2350.693025 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.43652 -35.79969 -33.14001 -32.01995 -29.49511 -27.29627 -26.36644 -26.08265 -23.70103 -21.42522 -20.17245 -19.73304 -18.35961 -16.27940 -15.64332 -15.01722 -14.67003 -14.48856 -14.06602 -13.52386 -12.90574 -12.71260 -12.38508 -12.03447 -11.77534 -11.40507 -11.12781 -11.06460 -10.96025 -10.92565 -10.66239 -10.50517 -10.40100 -10.13803 -10.10693 -9.80340 -9.55600 -9.44359 -9.05642 -8.39928 -7.08693 -5.99224 -4.00016 3.33919 3.39734 3.43306 4.41042 4.45572 4.91911 4.96233 5.16739 5.33835 5.36392 5.42417 5.51929 5.65514 5.77737 5.83408 5.92353 5.96330 6.01582 6.05798 6.10189 6.20345 6.25139 6.29548 6.35850 6.48685 6.54302 6.60032 6.67064 6.77802 6.86672 6.94066 7.38938 7.44818 7.86173 8.17204 8.30538 8.63870 9.08377 9.63874 11.11591 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.043801 B = 0.007245 C = 0.006705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.102057 B = 3863.543965 C = 4174.916763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.525 5.525 3 C 0.191 3.809 4 C -0.505 4.505 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.094 3.906 13 H 0.075 0.925 14 C -0.155 4.155 15 C -0.106 4.106 16 C -0.138 4.138 17 H 0.104 0.896 18 C -0.110 4.110 19 C -0.123 4.123 20 C -0.103 4.103 21 C -0.088 4.088 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.070 0.930 25 H 0.021 0.979 26 H 0.027 0.973 27 H -0.008 1.008 28 H 0.260 0.740 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.763 -12.791 -5.049 14.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.248 5.248 3 C 0.066 3.934 4 C -0.544 4.544 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.016 4.016 13 H 0.093 0.907 14 C -0.195 4.195 15 C -0.143 4.143 16 C -0.156 4.156 17 H 0.121 0.879 18 C -0.147 4.147 19 C -0.160 4.160 20 C -0.141 4.141 21 C -0.107 4.107 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.039 0.961 26 H 0.045 0.955 27 H 0.009 0.991 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.508 -12.839 -4.640 14.377 hybrid contribution -0.320 1.013 -0.043 1.063 sum -4.827 -11.826 -4.682 13.605 Atomic orbital electron populations 1.22652 0.89684 1.00694 0.99513 1.62312 1.06606 1.17482 1.38359 1.19715 0.95250 0.82054 0.96358 1.21197 1.34574 0.96855 1.01787 0.91919 1.24988 0.95403 0.97391 0.96894 1.69966 1.38539 1.11418 1.34001 0.86521 0.78835 0.78418 0.83762 1.20665 1.21386 1.19909 1.21669 0.98700 0.92444 0.88751 0.90719 1.23608 0.99020 0.98688 0.98163 1.21886 0.98760 0.97288 0.96407 1.23055 0.98836 0.95688 0.98049 0.87857 1.21932 1.00048 0.95930 0.96815 1.22928 0.98540 0.98621 0.95940 1.21363 0.97748 0.96706 0.98247 1.21526 0.96421 0.95529 0.97225 0.92560 0.92725 0.91153 0.96087 0.95493 0.99059 0.93014 0.92346 0.90873 0.92541 0.92212 0.92398 0.92149 0.92069 0.92490 0.90096 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 7.34 60.07 0.44 0.88 16 2 N -0.52 -11.27 4.34 -236.16 -1.02 -12.30 16 3 C 0.19 5.01 4.38 -4.97 -0.02 4.99 16 4 C -0.51 -14.30 8.26 -34.44 -0.28 -14.58 16 5 H 0.06 1.76 7.29 -52.49 -0.38 1.38 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 8 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 12 C 0.09 1.72 3.15 -67.58 -0.21 1.51 16 13 H 0.07 1.42 8.03 -51.93 -0.42 1.01 16 14 C -0.16 -2.61 5.66 -23.43 -0.13 -2.75 16 15 C -0.11 -1.47 6.47 -25.63 -0.17 -1.64 16 16 C -0.14 -1.93 2.44 -89.46 -0.22 -2.15 16 17 H 0.10 1.56 3.99 -51.93 -0.21 1.36 16 18 C -0.11 -1.30 6.62 -25.63 -0.17 -1.47 16 19 C -0.12 -1.46 6.94 -23.43 -0.16 -1.63 16 20 C -0.10 -1.48 6.19 -26.68 -0.17 -1.65 16 21 C -0.09 -1.35 2.08 -91.10 -0.19 -1.53 16 22 H 0.06 0.82 8.01 -51.93 -0.42 0.40 16 23 H 0.05 0.95 4.79 -51.93 -0.25 0.70 16 24 H 0.07 1.51 6.58 -51.93 -0.34 1.17 16 25 H 0.02 0.39 4.88 -51.93 -0.25 0.14 16 26 H 0.03 0.76 8.00 -51.93 -0.42 0.35 16 27 H -0.01 -0.23 7.12 -51.93 -0.37 -0.60 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.07 1.39 5.49 -51.93 -0.28 1.10 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 1.32 6.48 -51.92 -0.34 0.98 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 277.57 15.07 4.18 4.18 Total: -1.00 -28.97 277.57 -8.69 -37.67 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -6.19 Total: -1.56 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: -1.38 Total: -18.57 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: -0.29 Total: -38.54 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.97 -8.69 -37.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707930967.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.357 kcal (2) G-P(sol) polarization free energy of solvation -28.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds