Wall clock time and date at job start Mon Mar 30 2020 03:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46902 * 110.99493 * 2 1 4 4 C 1.50699 * 109.47332 * 66.04796 * 3 2 1 5 5 H 1.08004 * 119.99929 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00190 * 179.97438 * 4 3 2 7 7 N 1.31508 * 120.00108 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00044 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47147 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46881 * 120.00459 * 8 6 4 11 11 H 1.48500 * 109.47246 * 240.00457 * 8 6 4 12 12 C 1.46901 * 111.00001 * 236.04765 * 2 1 3 13 13 H 1.08999 * 110.83061 * 69.24100 * 12 2 1 14 14 C 1.56248 * 110.94054 * 305.48837 * 12 2 1 15 15 C 1.55917 * 105.87182 * 216.59678 * 14 12 2 16 16 C 1.49974 * 104.07959 * 353.41670 * 15 14 12 17 17 H 1.08994 * 108.49798 * 282.38950 * 16 15 14 18 18 C 1.49971 * 126.88191 * 150.36780 * 16 15 14 19 19 C 1.55914 * 104.08574 * 209.62654 * 18 16 15 20 20 C 1.56252 * 105.86584 * 6.58378 * 19 18 16 21 21 C 1.51728 * 110.93657 * 192.95528 * 12 2 1 22 22 H 1.08998 * 111.64844 * 46.26193 * 21 12 2 23 23 H 1.09004 * 109.46521 * 189.33474 * 1 2 3 24 24 H 1.08997 * 109.47210 * 309.33050 * 1 2 3 25 25 H 1.09000 * 109.47166 * 69.33622 * 1 2 3 26 26 H 1.09004 * 109.46602 * 186.04650 * 3 2 1 27 27 H 1.08997 * 109.47246 * 306.04665 * 3 2 1 28 28 H 0.96995 * 120.00546 * 179.97438 * 7 6 4 29 29 H 1.09003 * 110.16997 * 97.49450 * 14 12 2 30 30 H 1.09003 * 110.17035 * 335.69786 * 14 12 2 31 31 H 1.08996 * 110.50659 * 234.77052 * 15 14 12 32 32 H 1.09000 * 110.50840 * 112.06168 * 15 14 12 33 33 H 1.08995 * 110.51467 * 328.27940 * 18 16 15 34 34 H 1.09003 * 110.50531 * 90.84146 * 18 16 15 35 35 H 1.08990 * 110.17234 * 125.68752 * 19 18 16 36 36 H 1.09006 * 110.17384 * 247.41712 * 19 18 16 37 37 H 1.09004 * 110.93921 * 143.40499 * 20 19 18 38 38 H 1.08997 * 110.94650 * 267.09134 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5115 2.0485 6 6 2.0275 3.3492 1.5289 7 7 2.7126 4.0017 0.6154 8 14 1.5825 4.1870 3.1381 9 1 0.8145 3.2446 3.9909 10 1 2.8240 4.5937 3.8443 11 1 0.7558 5.3885 2.8586 12 6 1.9955 -0.7660 -1.1376 13 1 1.7973 -0.2501 -2.0772 14 6 1.4048 -2.2123 -1.1583 15 6 2.5594 -3.1376 -1.6499 16 6 3.6527 -2.1848 -2.0324 17 1 3.4100 -1.7515 -3.0026 18 6 5.1293 -2.4422 -1.9820 19 6 5.7507 -1.0364 -1.7200 20 6 4.5441 -0.0764 -1.4671 21 6 3.4791 -1.0358 -0.9695 22 1 3.7124 -1.3885 0.0351 23 1 -0.3632 -1.0141 0.1667 24 1 -0.3633 0.6513 0.7949 25 1 -0.3633 0.3626 -0.9615 26 1 3.0797 1.3445 -0.1083 27 1 1.5610 1.9274 -0.8309 28 1 2.9871 4.9178 0.7773 29 1 0.5620 -2.2643 -1.8477 30 1 1.0900 -2.5041 -0.1563 31 1 2.2405 -3.7197 -2.5144 32 1 2.8901 -3.7954 -0.8462 33 1 5.3705 -3.1242 -1.1667 34 1 5.4792 -2.8456 -2.9322 35 1 6.3960 -1.0684 -0.8422 36 1 6.3177 -0.7078 -2.5910 37 1 4.7883 0.6638 -0.7051 38 1 4.2309 0.4078 -2.3921 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707930969.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:21 Heat of formation + Delta-G solvation = -24.550911 kcal Electronic energy + Delta-G solvation = -16138.023724 eV Core-core repulsion = 13785.845961 eV Total energy + Delta-G solvation = -2352.177763 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.20915 -37.61797 -35.03404 -33.99666 -30.63666 -29.40970 -27.62480 -26.84390 -25.74089 -22.85370 -21.44312 -20.94237 -20.06029 -18.40076 -17.10109 -16.42646 -16.27050 -15.92777 -15.52587 -14.95275 -14.61622 -14.14908 -13.75630 -13.70452 -13.45350 -13.28912 -12.87597 -12.75897 -12.42317 -12.23020 -12.17405 -12.01498 -11.75941 -11.70619 -11.49007 -11.20804 -11.12561 -11.04941 -10.73160 -10.59533 -8.98926 -8.20088 -6.29741 1.38890 1.39543 1.53314 2.39516 3.11866 3.22215 3.36514 3.75984 3.92418 4.15318 4.23247 4.27069 4.45704 4.51247 4.56898 4.66578 4.68137 4.75574 4.77373 4.85814 4.94242 5.02145 5.05687 5.13494 5.20100 5.21344 5.23429 5.28689 5.37627 5.44035 5.48807 5.58221 5.64158 5.70073 6.09952 6.38622 6.72352 6.87428 7.39483 8.91065 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.033605 B = 0.007912 C = 0.006769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.007266 B = 3538.035704 C = 4135.699398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.541 5.541 3 C 0.206 3.794 4 C -0.524 4.524 5 H 0.061 0.939 6 C 0.000 4.000 7 N -0.934 5.934 8 Si 0.969 3.031 9 H -0.264 1.264 10 H -0.278 1.278 11 H -0.278 1.278 12 C 0.080 3.920 13 H 0.016 0.984 14 C -0.108 4.108 15 C -0.092 4.092 16 C -0.104 4.104 17 H 0.055 0.945 18 C -0.095 4.095 19 C -0.116 4.116 20 C -0.117 4.117 21 C -0.096 4.096 22 H 0.069 0.931 23 H 0.081 0.919 24 H 0.054 0.946 25 H 0.005 0.995 26 H 0.022 0.978 27 H -0.053 1.053 28 H 0.263 0.737 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.036 0.964 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.827 -13.915 -5.215 14.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.264 5.264 3 C 0.080 3.920 4 C -0.562 4.562 5 H 0.079 0.921 6 C -0.198 4.198 7 N -0.574 5.574 8 Si 0.793 3.207 9 H -0.188 1.188 10 H -0.203 1.203 11 H -0.204 1.204 12 C -0.029 4.029 13 H 0.034 0.966 14 C -0.146 4.146 15 C -0.130 4.130 16 C -0.123 4.123 17 H 0.073 0.927 18 C -0.133 4.133 19 C -0.153 4.153 20 C -0.155 4.155 21 C -0.115 4.115 22 H 0.088 0.912 23 H 0.100 0.900 24 H 0.073 0.927 25 H 0.024 0.976 26 H 0.040 0.960 27 H -0.035 1.035 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.055 0.945 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.053 -13.981 -4.825 14.932 hybrid contribution -0.490 1.788 -0.086 1.856 sum 1.563 -12.193 -4.911 13.238 Atomic orbital electron populations 1.22228 0.88188 1.01614 0.99001 1.62226 1.07694 1.15211 1.41317 1.19442 0.94870 0.83600 0.94099 1.21542 1.34637 0.97578 1.02444 0.92092 1.25915 0.95099 0.98050 1.00690 1.70099 1.39476 1.11775 1.36100 0.85346 0.78097 0.78191 0.79050 1.18753 1.20336 1.20390 1.22228 0.95416 0.94683 0.90529 0.96576 1.22935 0.98194 0.91637 1.01822 1.21367 0.93484 0.96573 1.01547 1.21633 0.95800 0.96647 0.98196 0.92667 1.21378 0.92932 0.96256 1.02689 1.22887 0.96378 0.94299 1.01769 1.21994 0.96896 0.97299 0.99325 1.22256 0.92690 0.97189 0.99327 0.91226 0.90050 0.92741 0.97618 0.96031 1.03517 0.92794 0.91226 0.90911 0.89794 0.90646 0.90799 0.89888 0.91568 0.90828 0.94505 0.93210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.54 9.02 127.69 1.15 2.69 16 2 N -0.54 -24.61 4.61 -897.39 -4.14 -28.74 16 3 C 0.21 11.50 4.62 85.56 0.40 11.89 16 4 C -0.52 -30.81 8.38 25.60 0.21 -30.60 16 5 H 0.06 3.53 7.17 -2.91 -0.02 3.51 16 6 C 0.00 0.01 5.46 84.66 0.46 0.47 16 7 N -0.93 -57.68 13.29 21.45 0.28 -57.40 16 8 Si 0.97 45.45 29.54 68.60 2.03 47.47 16 9 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 12 C 0.08 3.02 2.26 45.63 0.10 3.13 16 13 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 14 C -0.11 -3.04 5.44 32.73 0.18 -2.86 16 15 C -0.09 -2.08 6.73 30.63 0.21 -1.88 16 16 C -0.10 -2.68 2.52 -11.16 -0.03 -2.71 16 17 H 0.05 1.49 7.96 -2.39 -0.02 1.47 16 18 C -0.10 -2.10 6.73 30.63 0.21 -1.90 16 19 C -0.12 -3.06 6.94 32.73 0.23 -2.83 16 20 C -0.12 -4.23 5.69 31.31 0.18 -4.06 16 21 C -0.10 -3.36 2.06 -10.04 -0.02 -3.38 16 22 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 23 H 0.08 2.70 6.86 -2.38 -0.02 2.68 16 24 H 0.05 2.39 6.66 -2.39 -0.02 2.38 16 25 H 0.01 0.21 8.13 -2.39 -0.02 0.19 16 26 H 0.02 1.28 5.29 -2.39 -0.01 1.26 16 27 H -0.05 -3.27 8.12 -2.39 -0.02 -3.29 16 28 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 29 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.07 2.09 7.45 -2.39 -0.02 2.07 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 37 H 0.04 1.57 7.00 -2.38 -0.02 1.55 16 38 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -65.75 288.97 2.45 -63.30 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: 1.00 Total: 7.39 kcal Atomic # 6 Polarization: -35.31 SS G_CDS: 3.27 Total: -32.03 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -3.85 Total: -86.14 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -65.75 2.45 -63.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707930969.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.749 kcal (2) G-P(sol) polarization free energy of solvation -65.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds