Wall clock time and date at job start Mon Mar 30 2020 03:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46898 * 111.00015 * 2 1 4 4 C 1.50698 * 109.47237 * 66.04442 * 3 2 1 5 5 H 1.07999 * 120.00178 * 0.02562 * 4 3 2 6 6 C 1.37880 * 120.00041 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99957 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 120.00169 * 359.97438 * 6 4 3 9 9 H 1.48500 * 109.46997 * 89.99849 * 8 6 4 10 10 H 1.48497 * 109.47324 * 209.99964 * 8 6 4 11 11 H 1.48506 * 109.46951 * 330.00381 * 8 6 4 12 12 C 1.46903 * 110.99905 * 236.04756 * 2 1 3 13 13 H 1.09002 * 110.52353 * 71.38405 * 12 2 1 14 14 C 1.55876 * 111.08075 * 308.58473 * 12 2 1 15 15 C 1.54865 * 103.15238 * 203.97884 * 14 12 2 16 16 C 1.54198 * 104.27789 * 37.71397 * 15 14 12 17 17 H 1.08994 * 111.92061 * 214.31736 * 16 15 14 18 18 C 1.54203 * 109.47453 * 91.00512 * 16 15 14 19 19 C 1.54862 * 104.27828 * 221.59557 * 18 16 15 20 20 C 1.54864 * 102.73996 * 38.11168 * 19 18 16 21 21 C 1.54193 * 104.27948 * 321.90118 * 20 19 18 22 22 H 1.09002 * 111.38702 * 262.00101 * 21 20 19 23 23 H 1.09002 * 109.47580 * 189.46043 * 1 2 3 24 24 H 1.08995 * 109.47191 * 309.46519 * 1 2 3 25 25 H 1.09007 * 109.47431 * 69.46032 * 1 2 3 26 26 H 1.08997 * 109.47317 * 186.04959 * 3 2 1 27 27 H 1.09008 * 109.47578 * 306.04884 * 3 2 1 28 28 H 0.96994 * 119.99872 * 180.02562 * 7 6 4 29 29 H 1.08997 * 110.90247 * 85.36920 * 14 12 2 30 30 H 1.09001 * 110.22611 * 322.27024 * 14 12 2 31 31 H 1.08997 * 110.46917 * 279.01973 * 15 14 12 32 32 H 1.09005 * 110.58091 * 156.46893 * 15 14 12 33 33 H 1.08998 * 110.46586 * 102.90694 * 18 16 15 34 34 H 1.08994 * 110.58288 * 340.35762 * 18 16 15 35 35 H 1.08992 * 110.76220 * 279.79665 * 19 18 16 36 36 H 1.09005 * 110.91172 * 156.49272 * 19 18 16 37 37 H 1.08997 * 110.46772 * 203.20045 * 20 19 18 38 38 H 1.08995 * 110.57966 * 80.65596 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 1 1.0746 1.5113 2.0488 6 6 2.0267 3.3495 1.5284 7 7 1.7143 3.9391 2.6618 8 14 3.0000 4.2762 0.2309 9 1 2.0633 4.9797 -0.6818 10 1 3.8862 5.2679 0.8913 11 1 3.8239 3.3175 -0.5484 12 6 1.9954 -0.7660 -1.1376 13 1 1.8281 -0.2280 -2.0708 14 6 1.3495 -2.1829 -1.2065 15 6 2.4000 -3.0116 -1.9863 16 6 3.7559 -2.4833 -1.4762 17 1 4.5140 -2.4854 -2.2593 18 6 4.2134 -3.3242 -0.2673 19 6 4.7813 -2.2834 0.7289 20 6 3.8093 -1.0888 0.5659 21 6 3.4975 -1.0555 -0.9438 22 1 4.1139 -0.3200 -1.4609 23 1 -0.3634 -1.0137 0.1689 24 1 -0.3633 0.6532 0.7933 25 1 -0.3634 0.3606 -0.9624 26 1 3.0797 1.3444 -0.1083 27 1 1.5611 1.9274 -0.8309 28 1 1.9882 4.8554 2.8234 29 1 0.4030 -2.1530 -1.7462 30 1 1.2102 -2.5828 -0.2021 31 1 2.3025 -2.8389 -3.0581 32 1 2.2951 -4.0729 -1.7608 33 1 4.9893 -4.0294 -0.5653 34 1 3.3682 -3.8525 0.1738 35 1 5.7957 -1.9967 0.4516 36 1 4.7549 -2.6665 1.7490 37 1 4.2900 -0.1612 0.8764 38 1 2.8978 -1.2555 1.1398 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707930970.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:23 Heat of formation + Delta-G solvation = -11.050669 kcal Electronic energy + Delta-G solvation = -16370.808586 eV Core-core repulsion = 14019.216238 eV Total energy + Delta-G solvation = -2351.592348 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.69872 -35.87739 -33.01109 -32.14102 -29.41087 -28.11709 -26.60191 -25.16108 -23.77596 -20.82341 -20.64998 -19.32580 -18.03548 -16.83383 -16.02622 -14.96907 -14.48268 -14.40861 -13.76950 -13.74751 -13.40342 -12.62933 -12.39022 -12.29507 -11.65258 -11.40868 -11.29518 -11.07597 -10.81000 -10.68243 -10.57760 -10.35392 -10.29893 -10.15123 -10.04886 -9.98840 -9.78401 -9.68924 -9.20147 -8.54470 -7.26919 -6.02725 -3.99002 3.29265 3.37086 3.39718 4.44226 4.66488 4.80119 4.81891 5.10383 5.30331 5.38978 5.50178 5.52636 5.71595 5.80664 5.87346 5.91821 6.01239 6.01868 6.10581 6.14831 6.21602 6.25347 6.28341 6.36517 6.41632 6.53259 6.59816 6.66258 6.79144 6.91055 6.94832 7.06626 7.24601 7.66862 7.98874 8.14108 8.70575 9.06445 9.59892 11.10507 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.033331 B = 0.008754 C = 0.008052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.845996 B = 3197.705028 C = 3476.367444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.518 5.518 3 C 0.161 3.839 4 C -0.504 4.504 5 H 0.081 0.919 6 C 0.068 3.932 7 N -0.902 5.902 8 Si 0.872 3.128 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.267 1.267 12 C 0.080 3.920 13 H 0.031 0.969 14 C -0.114 4.114 15 C -0.116 4.116 16 C -0.091 4.091 17 H 0.068 0.932 18 C -0.114 4.114 19 C -0.130 4.130 20 C -0.104 4.104 21 C -0.084 4.084 22 H 0.063 0.937 23 H 0.049 0.951 24 H 0.079 0.921 25 H 0.007 0.993 26 H 0.031 0.969 27 H -0.021 1.021 28 H 0.263 0.737 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.027 -12.903 -8.342 15.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.242 5.242 3 C 0.034 3.966 4 C -0.543 4.543 5 H 0.099 0.901 6 C -0.133 4.133 7 N -0.541 5.541 8 Si 0.700 3.300 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.192 1.192 12 C -0.029 4.029 13 H 0.049 0.951 14 C -0.152 4.152 15 C -0.154 4.154 16 C -0.110 4.110 17 H 0.086 0.914 18 C -0.152 4.152 19 C -0.168 4.168 20 C -0.141 4.141 21 C -0.103 4.103 22 H 0.082 0.918 23 H 0.068 0.932 24 H 0.098 0.902 25 H 0.026 0.974 26 H 0.049 0.951 27 H -0.003 1.003 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.201 -12.944 -7.804 15.450 hybrid contribution 0.284 1.180 -1.488 1.920 sum 3.485 -11.763 -9.292 15.390 Atomic orbital electron populations 1.22263 0.88607 1.00523 1.00046 1.62066 1.06852 1.16022 1.39212 1.20208 0.95499 0.84166 0.96683 1.21041 1.35246 0.97068 1.00918 0.90131 1.24888 0.95822 0.97401 0.95228 1.69894 1.47111 1.13195 1.23893 0.86902 0.80714 0.80107 0.82280 1.20477 1.21203 1.19179 1.22599 0.94411 0.93652 0.92264 0.95113 1.22680 0.97055 0.94953 1.00467 1.22337 0.94913 0.98996 0.99140 1.22303 0.96472 0.95143 0.97095 0.91358 1.22403 0.99826 0.97238 0.95705 1.22566 0.98893 0.96810 0.98483 1.22318 0.99877 0.96887 0.95054 1.22287 0.95358 0.95114 0.97533 0.91816 0.93211 0.90183 0.97427 0.95062 1.00347 0.92752 0.92420 0.90638 0.92353 0.91863 0.92770 0.91689 0.92582 0.92144 0.91962 0.88628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 8.97 60.06 0.54 1.19 16 2 N -0.52 -10.72 2.87 -233.73 -0.67 -11.39 16 3 C 0.16 3.91 3.35 -4.98 -0.02 3.89 16 4 C -0.50 -14.26 8.93 -34.44 -0.31 -14.57 16 5 H 0.08 2.47 7.42 -52.49 -0.39 2.08 16 6 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 7 N -0.90 -27.70 13.96 55.43 0.77 -26.92 16 8 Si 0.87 21.77 27.47 -169.99 -4.67 17.10 16 9 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 12 C 0.08 1.39 2.37 -65.55 -0.16 1.24 16 13 H 0.03 0.56 8.13 -51.93 -0.42 0.14 16 14 C -0.11 -1.63 5.00 -24.21 -0.12 -1.75 16 15 C -0.12 -1.42 6.17 -25.12 -0.16 -1.58 16 16 C -0.09 -1.21 3.70 -88.55 -0.33 -1.54 16 17 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 18 C -0.11 -1.43 6.25 -25.12 -0.16 -1.59 16 19 C -0.13 -1.83 6.90 -24.77 -0.17 -2.00 16 20 C -0.10 -1.81 5.01 -25.12 -0.13 -1.93 16 21 C -0.08 -1.38 2.85 -88.55 -0.25 -1.63 16 22 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 23 H 0.05 0.83 7.08 -51.93 -0.37 0.46 16 24 H 0.08 1.72 6.65 -51.93 -0.35 1.38 16 25 H 0.01 0.14 8.13 -51.93 -0.42 -0.29 16 26 H 0.03 0.77 5.40 -51.93 -0.28 0.49 16 27 H -0.02 -0.53 7.55 -51.92 -0.39 -0.92 16 28 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 30 H 0.07 1.12 7.98 -51.93 -0.41 0.71 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.69 7.74 -51.93 -0.40 0.29 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.81 7.66 -51.93 -0.40 0.41 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 1.22 7.57 -51.93 -0.39 0.82 16 38 H 0.10 1.85 6.76 -51.93 -0.35 1.50 16 LS Contribution 283.38 15.07 4.27 4.27 Total: -1.00 -29.30 283.38 -8.35 -37.64 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -6.70 Total: -2.32 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -1.35 Total: -18.39 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.10 Total: -38.31 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.30 -8.35 -37.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707930970.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.593 kcal (2) G-P(sol) polarization free energy of solvation -29.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds