Wall clock time and date at job start Mon Mar 30 2020 03:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46898 * 111.00015 * 2 1 4 4 C 1.50698 * 109.47237 * 66.04442 * 3 2 1 5 5 H 1.07999 * 120.00178 * 0.02562 * 4 3 2 6 6 C 1.37880 * 120.00041 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99957 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 120.00169 * 359.97438 * 6 4 3 9 9 H 1.48500 * 109.46997 * 89.99849 * 8 6 4 10 10 H 1.48497 * 109.47324 * 209.99964 * 8 6 4 11 11 H 1.48506 * 109.46951 * 330.00381 * 8 6 4 12 12 C 1.46903 * 110.99905 * 236.04756 * 2 1 3 13 13 H 1.09002 * 110.52353 * 71.38405 * 12 2 1 14 14 C 1.55876 * 111.08075 * 308.58473 * 12 2 1 15 15 C 1.54865 * 103.15238 * 203.97884 * 14 12 2 16 16 C 1.54198 * 104.27789 * 37.71397 * 15 14 12 17 17 H 1.08994 * 111.92061 * 214.31736 * 16 15 14 18 18 C 1.54203 * 109.47453 * 91.00512 * 16 15 14 19 19 C 1.54862 * 104.27828 * 221.59557 * 18 16 15 20 20 C 1.54864 * 102.73996 * 38.11168 * 19 18 16 21 21 C 1.54193 * 104.27948 * 321.90118 * 20 19 18 22 22 H 1.09002 * 111.38702 * 262.00101 * 21 20 19 23 23 H 1.09002 * 109.47580 * 189.46043 * 1 2 3 24 24 H 1.08995 * 109.47191 * 309.46519 * 1 2 3 25 25 H 1.09007 * 109.47431 * 69.46032 * 1 2 3 26 26 H 1.08997 * 109.47317 * 186.04959 * 3 2 1 27 27 H 1.09008 * 109.47578 * 306.04884 * 3 2 1 28 28 H 0.96994 * 119.99872 * 180.02562 * 7 6 4 29 29 H 1.08997 * 110.90247 * 85.36920 * 14 12 2 30 30 H 1.09001 * 110.22611 * 322.27024 * 14 12 2 31 31 H 1.08997 * 110.46917 * 279.01973 * 15 14 12 32 32 H 1.09005 * 110.58091 * 156.46893 * 15 14 12 33 33 H 1.08998 * 110.46586 * 102.90694 * 18 16 15 34 34 H 1.08994 * 110.58288 * 340.35762 * 18 16 15 35 35 H 1.08992 * 110.76220 * 279.79665 * 19 18 16 36 36 H 1.09005 * 110.91172 * 156.49272 * 19 18 16 37 37 H 1.08997 * 110.46772 * 203.20045 * 20 19 18 38 38 H 1.08995 * 110.57966 * 80.65596 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 1 1.0746 1.5113 2.0488 6 6 2.0267 3.3495 1.5284 7 7 1.7143 3.9391 2.6618 8 14 3.0000 4.2762 0.2309 9 1 2.0633 4.9797 -0.6818 10 1 3.8862 5.2679 0.8913 11 1 3.8239 3.3175 -0.5484 12 6 1.9954 -0.7660 -1.1376 13 1 1.8281 -0.2280 -2.0708 14 6 1.3495 -2.1829 -1.2065 15 6 2.4000 -3.0116 -1.9863 16 6 3.7559 -2.4833 -1.4762 17 1 4.5140 -2.4854 -2.2593 18 6 4.2134 -3.3242 -0.2673 19 6 4.7813 -2.2834 0.7289 20 6 3.8093 -1.0888 0.5659 21 6 3.4975 -1.0555 -0.9438 22 1 4.1139 -0.3200 -1.4609 23 1 -0.3634 -1.0137 0.1689 24 1 -0.3633 0.6532 0.7933 25 1 -0.3634 0.3606 -0.9624 26 1 3.0797 1.3444 -0.1083 27 1 1.5611 1.9274 -0.8309 28 1 1.9882 4.8554 2.8234 29 1 0.4030 -2.1530 -1.7462 30 1 1.2102 -2.5828 -0.2021 31 1 2.3025 -2.8389 -3.0581 32 1 2.2951 -4.0729 -1.7608 33 1 4.9893 -4.0294 -0.5653 34 1 3.3682 -3.8525 0.1738 35 1 5.7957 -1.9967 0.4516 36 1 4.7549 -2.6665 1.7490 37 1 4.2900 -0.1612 0.8764 38 1 2.8978 -1.2555 1.1398 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707930970.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:23 Heat of formation + Delta-G solvation = -27.840908 kcal Electronic energy + Delta-G solvation = -16371.536665 eV Core-core repulsion = 14019.216238 eV Total energy + Delta-G solvation = -2352.320427 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.96136 -37.44920 -34.77033 -33.77903 -30.74504 -29.96400 -27.87936 -26.61915 -25.34360 -22.62206 -21.86818 -20.51229 -19.41068 -18.90652 -17.28479 -16.56473 -16.32367 -15.90850 -15.19611 -14.95327 -14.84518 -14.38066 -14.16938 -13.79684 -13.11599 -13.07792 -12.73068 -12.53335 -12.47898 -12.17898 -11.84635 -11.77626 -11.56149 -11.55636 -11.47936 -11.31835 -11.23992 -11.16888 -11.04858 -10.79311 -8.93470 -8.29478 -6.31076 1.29582 1.31569 1.42301 2.31613 3.03505 3.23940 3.60616 3.68779 3.90312 4.23221 4.36400 4.43885 4.49642 4.53148 4.58995 4.69745 4.70836 4.78938 4.84567 4.91416 4.95590 4.98681 5.05004 5.14453 5.16937 5.20956 5.25417 5.28803 5.36338 5.45958 5.54145 5.59912 5.64421 5.80281 6.04071 6.42383 6.71047 6.75505 7.32108 8.87173 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.033331 B = 0.008754 C = 0.008052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.845996 B = 3197.705028 C = 3476.367444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.529 5.529 3 C 0.175 3.825 4 C -0.508 4.508 5 H 0.040 0.960 6 C 0.009 3.991 7 N -0.947 5.947 8 Si 0.940 3.060 9 H -0.269 1.269 10 H -0.279 1.279 11 H -0.254 1.254 12 C 0.072 3.928 13 H 0.026 0.974 14 C -0.107 4.107 15 C -0.107 4.107 16 C -0.086 4.086 17 H 0.085 0.915 18 C -0.107 4.107 19 C -0.126 4.126 20 C -0.104 4.104 21 C -0.089 4.089 22 H 0.052 0.948 23 H 0.079 0.921 24 H 0.046 0.954 25 H 0.016 0.984 26 H 0.028 0.972 27 H -0.026 1.026 28 H 0.266 0.734 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.027 0.973 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.981 -14.861 -10.748 18.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.252 5.252 3 C 0.048 3.952 4 C -0.546 4.546 5 H 0.058 0.942 6 C -0.188 4.188 7 N -0.588 5.588 8 Si 0.764 3.236 9 H -0.194 1.194 10 H -0.205 1.205 11 H -0.178 1.178 12 C -0.037 4.037 13 H 0.044 0.956 14 C -0.145 4.145 15 C -0.145 4.145 16 C -0.104 4.104 17 H 0.103 0.897 18 C -0.145 4.145 19 C -0.163 4.163 20 C -0.142 4.142 21 C -0.108 4.108 22 H 0.071 0.929 23 H 0.097 0.903 24 H 0.065 0.935 25 H 0.034 0.966 26 H 0.046 0.954 27 H -0.009 1.009 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.046 0.954 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.147 -14.927 -10.221 18.560 hybrid contribution -0.069 1.765 -0.650 1.883 sum 4.078 -13.161 -10.872 17.551 Atomic orbital electron populations 1.22209 0.87924 1.01585 0.99215 1.61994 1.07595 1.14035 1.41592 1.19894 0.95201 0.86043 0.94046 1.21242 1.34373 0.97277 1.01725 0.94159 1.25775 0.97035 0.98480 0.97510 1.70041 1.48779 1.13822 1.26164 0.85813 0.79415 0.78826 0.79510 1.19423 1.20467 1.17803 1.22774 0.95550 0.94913 0.90420 0.95625 1.22651 0.98217 0.92801 1.00810 1.22326 0.92945 0.99736 0.99481 1.22302 0.97743 0.92631 0.97746 0.89682 1.22390 1.00603 0.96870 0.94609 1.22538 0.98404 0.95844 0.99552 1.22194 0.99411 0.96877 0.95731 1.22344 0.94442 0.97395 0.96614 0.92949 0.90265 0.93476 0.96568 0.95412 1.00851 0.92499 0.91198 0.91318 0.91005 0.89580 0.90221 0.91363 0.91806 0.91829 0.95431 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.51 8.97 127.69 1.15 2.65 16 2 N -0.53 -22.12 2.87 -893.37 -2.57 -24.69 16 3 C 0.18 8.69 3.35 85.56 0.29 8.98 16 4 C -0.51 -29.93 8.93 25.60 0.23 -29.70 16 5 H 0.04 2.63 7.42 -2.91 -0.02 2.61 16 6 C 0.01 0.54 5.47 84.65 0.46 1.01 16 7 N -0.95 -60.14 13.96 21.45 0.30 -59.84 16 8 Si 0.94 45.45 27.47 68.60 1.88 47.33 16 9 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.25 -11.64 6.54 99.48 0.65 -10.99 16 12 C 0.07 2.42 2.37 46.32 0.11 2.53 16 13 H 0.03 0.90 8.13 -2.39 -0.02 0.88 16 14 C -0.11 -2.76 5.00 32.23 0.16 -2.60 16 15 C -0.11 -2.17 6.17 31.64 0.20 -1.97 16 16 C -0.09 -1.96 3.70 -9.45 -0.03 -2.00 16 17 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 18 C -0.11 -2.30 6.25 31.64 0.20 -2.10 16 19 C -0.13 -3.34 6.90 31.87 0.22 -3.12 16 20 C -0.10 -3.65 5.01 31.64 0.16 -3.49 16 21 C -0.09 -2.81 2.85 -9.45 -0.03 -2.83 16 22 H 0.05 1.74 8.14 -2.39 -0.02 1.73 16 23 H 0.08 2.57 7.08 -2.39 -0.02 2.55 16 24 H 0.05 2.11 6.65 -2.39 -0.02 2.10 16 25 H 0.02 0.58 8.13 -2.38 -0.02 0.56 16 26 H 0.03 1.40 5.40 -2.39 -0.01 1.38 16 27 H -0.03 -1.31 7.55 -2.38 -0.02 -1.33 16 28 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 29 H 0.07 1.64 8.13 -2.39 -0.02 1.62 16 30 H 0.07 1.88 7.98 -2.39 -0.02 1.86 16 31 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.09 1.42 7.74 -2.38 -0.02 1.40 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.07 1.44 7.66 -2.39 -0.02 1.42 16 35 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 37 H 0.03 1.11 7.57 -2.39 -0.02 1.09 16 38 H 0.07 2.82 6.76 -2.39 -0.02 2.80 16 Total: -1.00 -65.54 283.38 3.66 -61.88 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: 0.94 Total: 7.97 kcal Atomic # 6 Polarization: -35.75 SS G_CDS: 3.10 Total: -32.65 kcal Atomic # 7 Polarization: -82.26 SS G_CDS: -2.27 Total: -84.53 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.88 Total: 47.33 kcal Total: -65.54 3.66 -61.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707930970.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.035 kcal (2) G-P(sol) polarization free energy of solvation -65.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds