Wall clock time and date at job start Mon Mar 30 2020 02:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47027 * 2 1 4 4 C 1.50695 * 109.47117 * 240.00201 * 2 1 3 5 5 H 1.08003 * 119.99776 * 239.83885 * 4 2 1 6 6 C 1.37871 * 120.00781 * 59.84113 * 4 2 1 7 7 N 1.31514 * 120.00695 * 203.72739 * 6 4 2 8 8 Si 1.86809 * 119.99578 * 23.72532 * 6 4 2 9 9 H 1.48497 * 109.46996 * 91.10329 * 8 6 4 10 10 H 1.48499 * 109.47173 * 211.10484 * 8 6 4 11 11 H 1.48495 * 109.47052 * 331.10626 * 8 6 4 12 12 N 1.46901 * 109.46881 * 119.99727 * 2 1 3 13 13 C 1.47321 * 111.00227 * 286.15394 * 12 2 1 14 14 C 1.53448 * 88.53659 * 221.56896 * 13 12 2 15 15 H 1.09002 * 115.43050 * 270.93761 * 14 13 12 16 16 C 1.53888 * 112.18568 * 136.88894 * 14 13 12 17 17 C 1.53413 * 110.02454 * 208.03082 * 16 14 13 18 18 C 1.55379 * 106.41796 * 103.73604 * 17 16 14 19 19 C 1.50056 * 107.06372 * 283.57087 * 18 17 16 20 20 C 1.50984 * 114.98295 * 62.88846 * 19 18 17 21 21 C 1.47251 * 110.99817 * 189.51776 * 12 2 1 22 22 H 1.08998 * 113.79532 * 253.19662 * 21 12 2 23 23 H 1.08995 * 109.47098 * 186.05668 * 1 2 3 24 24 H 1.09006 * 109.46607 * 66.06448 * 1 2 3 25 25 H 1.08995 * 109.47698 * 306.06388 * 1 2 3 26 26 H 0.96996 * 120.00022 * 179.97438 * 7 6 4 27 27 H 1.09005 * 113.37454 * 336.48975 * 13 12 2 28 28 H 1.09004 * 113.37444 * 106.64256 * 13 12 2 29 29 H 1.08995 * 109.09444 * 88.11715 * 16 14 13 30 30 H 1.09006 * 109.77277 * 328.36542 * 16 14 13 31 31 H 1.09003 * 110.05534 * 344.51480 * 17 16 14 32 32 H 1.08998 * 110.06256 * 222.96726 * 17 16 14 33 33 H 1.08999 * 109.92986 * 164.18342 * 18 17 16 34 34 H 1.08998 * 109.92954 * 42.96070 * 18 17 16 35 35 H 1.08996 * 108.38394 * 301.45880 * 19 18 17 36 36 H 1.09003 * 108.23944 * 184.21156 * 19 18 17 37 37 H 1.08996 * 108.87319 * 153.18509 * 20 19 18 38 38 H 1.08995 * 108.86789 * 34.75904 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6554 -1.5869 -1.1313 6 6 1.6967 -0.2413 -2.4827 7 7 1.7109 -1.0554 -3.5155 8 14 1.2216 1.5507 -2.7124 9 1 2.4327 2.3461 -3.0373 10 1 0.2419 1.6647 -3.8226 11 1 0.6124 2.0657 -1.4599 12 7 2.0197 -0.6925 1.1995 13 6 1.8349 0.1390 2.4015 14 6 3.2265 -0.3031 2.8732 15 1 3.2504 -1.2135 3.4722 16 6 4.0451 0.8675 3.4457 17 6 5.5441 0.6038 3.2537 18 6 5.9994 1.4997 2.0686 19 6 5.5191 0.8410 0.8088 20 6 4.0191 0.7255 0.6816 21 6 3.4738 -0.5184 1.3526 22 1 4.0506 -1.4142 1.1227 23 1 -0.3633 -1.0219 0.1084 24 1 -0.3633 0.4170 -0.9394 25 1 -0.3634 0.6049 0.8307 26 1 1.4744 -0.7254 -4.3964 27 1 1.7703 1.2052 2.1842 28 1 1.0286 -0.2082 3.0477 29 1 3.8298 0.9665 4.5096 30 1 3.7734 1.7917 2.9355 31 1 5.7112 -0.4464 3.0141 32 1 6.0901 0.8736 4.1577 33 1 7.0867 1.5760 2.0569 34 1 5.5572 2.4916 2.1615 35 1 5.9463 -0.1605 0.7601 36 1 5.8929 1.4141 -0.0397 37 1 3.7559 0.6999 -0.3758 38 1 3.5582 1.6023 1.1365 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708316786.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:49 Heat of formation + Delta-G solvation = 27.251867 kcal Electronic energy + Delta-G solvation = -16645.636285 eV Core-core repulsion = 14295.704859 eV Total energy + Delta-G solvation = -2349.931426 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.59639 -36.02352 -33.54397 -31.70855 -30.73055 -27.85387 -26.18879 -24.60732 -23.53993 -21.93600 -20.57564 -19.52363 -17.44308 -16.66240 -15.67645 -15.42468 -14.83619 -14.19177 -13.50049 -13.32394 -13.07763 -12.79920 -12.42833 -12.24753 -12.06471 -11.86711 -11.51711 -11.34650 -10.83035 -10.76847 -10.54737 -10.45346 -10.16833 -10.09826 -9.95728 -9.80591 -9.45281 -9.23534 -9.11080 -8.36096 -7.69163 -6.13711 -3.99673 3.25723 3.35878 3.38870 4.41558 4.73667 4.82694 4.97227 5.16310 5.20453 5.31775 5.48090 5.55484 5.58345 5.74796 5.87130 5.97990 6.05097 6.14759 6.19021 6.21276 6.27073 6.33178 6.40896 6.44427 6.51989 6.53644 6.59327 6.69221 6.72720 6.88117 6.98830 7.12755 7.18806 7.54651 7.84982 8.07342 8.63107 9.03308 9.56241 10.99314 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.032782 B = 0.010165 C = 0.008998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.929211 B = 2753.988324 C = 3111.148842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.152 3.848 3 H 0.006 0.994 4 C -0.512 4.512 5 H 0.076 0.924 6 C 0.081 3.919 7 N -0.880 5.880 8 Si 0.852 3.148 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.259 1.259 12 N -0.454 5.454 13 C -0.002 4.002 14 C -0.123 4.123 15 H 0.095 0.905 16 C -0.110 4.110 17 C -0.118 4.118 18 C -0.117 4.117 19 C -0.112 4.112 20 C -0.134 4.134 21 C 0.062 3.938 22 H 0.081 0.919 23 H 0.053 0.947 24 H 0.046 0.954 25 H 0.018 0.982 26 H 0.263 0.737 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.098 0.902 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.466 5.489 11.892 14.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.044 3.956 3 H 0.023 0.977 4 C -0.549 4.549 5 H 0.094 0.906 6 C -0.122 4.122 7 N -0.517 5.517 8 Si 0.678 3.322 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.183 1.183 12 N -0.176 5.176 13 C -0.131 4.131 14 C -0.142 4.142 15 H 0.113 0.887 16 C -0.148 4.148 17 C -0.155 4.155 18 C -0.154 4.154 19 C -0.151 4.151 20 C -0.172 4.172 21 C -0.047 4.047 22 H 0.099 0.901 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.037 0.963 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.116 0.884 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.088 4.790 11.585 13.529 hybrid contribution -0.094 1.823 -0.475 1.886 sum 4.994 6.613 11.109 13.860 Atomic orbital electron populations 1.22035 0.98218 1.00414 0.98512 1.20124 0.92128 0.93106 0.90224 0.97655 1.20721 1.32651 1.13645 0.87877 0.90587 1.24823 0.94405 0.96858 0.96104 1.70078 1.47061 1.34077 1.00470 0.87331 0.78623 0.87900 0.78327 1.20596 1.21307 1.18332 1.68785 1.05877 1.40753 1.02171 1.23728 0.96886 0.96910 0.95614 1.23513 0.95718 0.98098 0.96897 0.88663 1.21930 0.94756 0.98254 0.99853 1.22143 0.95615 1.00253 0.97529 1.21632 0.99689 0.98525 0.95598 1.20548 0.96634 1.00850 0.97023 1.21265 0.94536 0.97296 1.04128 1.22928 0.92215 0.97320 0.92273 0.90118 0.92784 0.93550 0.96288 0.92730 0.92568 0.91339 0.92923 0.91625 0.91316 0.92765 0.92463 0.92226 0.92346 0.93044 0.88380 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.57 37.16 0.32 -2.76 16 2 C 0.15 3.63 0.84 -68.86 -0.06 3.57 16 3 H 0.01 0.14 4.48 -51.93 -0.23 -0.09 16 4 C -0.51 -14.20 7.31 -34.45 -0.25 -14.45 16 5 H 0.08 2.34 8.01 -52.48 -0.42 1.92 16 6 C 0.08 2.31 5.18 -17.82 -0.09 2.22 16 7 N -0.88 -26.58 13.96 55.43 0.77 -25.81 16 8 Si 0.85 21.02 25.87 -169.99 -4.40 16.62 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.26 -6.12 5.83 56.52 0.33 -5.79 16 12 N -0.45 -9.68 6.09 -226.48 -1.38 -11.06 16 13 C 0.00 -0.03 6.24 -6.57 -0.04 -0.07 16 14 C -0.12 -1.90 4.28 -88.57 -0.38 -2.28 16 15 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 16 C -0.11 -1.43 5.05 -26.05 -0.13 -1.56 16 17 C -0.12 -1.41 5.84 -25.25 -0.15 -1.56 16 18 C -0.12 -1.46 5.84 -26.93 -0.16 -1.61 16 19 C -0.11 -1.70 5.13 -29.21 -0.15 -1.85 16 20 C -0.13 -2.44 3.30 -28.51 -0.09 -2.54 16 21 C 0.06 1.17 3.38 -70.13 -0.24 0.93 16 22 H 0.08 1.58 8.02 -51.93 -0.42 1.17 16 23 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 24 H 0.05 1.09 5.13 -51.93 -0.27 0.83 16 25 H 0.02 0.38 7.82 -51.93 -0.41 -0.03 16 26 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.06 0.99 6.59 -51.93 -0.34 0.65 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.90 5.17 -51.93 -0.27 0.63 16 31 H 0.07 0.86 7.36 -51.93 -0.38 0.48 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.73 7.55 -51.93 -0.39 0.34 16 35 H 0.06 0.88 7.70 -51.93 -0.40 0.48 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.10 2.16 5.63 -51.93 -0.29 1.86 16 38 H 0.05 0.93 5.02 -51.93 -0.26 0.67 16 LS Contribution 270.72 15.07 4.08 4.08 Total: -1.00 -29.03 270.72 -8.59 -37.62 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -6.25 Total: 0.50 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: -1.42 Total: -21.96 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: -0.61 Total: -36.87 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.40 Total: 16.62 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.03 -8.59 -37.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708316786.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.873 kcal (2) G-P(sol) polarization free energy of solvation -29.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds