Wall clock time and date at job start Mon Mar 30 2020 02:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47027 * 2 1 4 4 C 1.50695 * 109.47117 * 240.00201 * 2 1 3 5 5 H 1.08003 * 119.99776 * 239.83885 * 4 2 1 6 6 C 1.37871 * 120.00781 * 59.84113 * 4 2 1 7 7 N 1.31514 * 120.00695 * 203.72739 * 6 4 2 8 8 Si 1.86809 * 119.99578 * 23.72532 * 6 4 2 9 9 H 1.48497 * 109.46996 * 91.10329 * 8 6 4 10 10 H 1.48499 * 109.47173 * 211.10484 * 8 6 4 11 11 H 1.48495 * 109.47052 * 331.10626 * 8 6 4 12 12 N 1.46901 * 109.46881 * 119.99727 * 2 1 3 13 13 C 1.47321 * 111.00227 * 286.15394 * 12 2 1 14 14 C 1.53448 * 88.53659 * 221.56896 * 13 12 2 15 15 H 1.09002 * 115.43050 * 270.93761 * 14 13 12 16 16 C 1.53888 * 112.18568 * 136.88894 * 14 13 12 17 17 C 1.53413 * 110.02454 * 208.03082 * 16 14 13 18 18 C 1.55379 * 106.41796 * 103.73604 * 17 16 14 19 19 C 1.50056 * 107.06372 * 283.57087 * 18 17 16 20 20 C 1.50984 * 114.98295 * 62.88846 * 19 18 17 21 21 C 1.47251 * 110.99817 * 189.51776 * 12 2 1 22 22 H 1.08998 * 113.79532 * 253.19662 * 21 12 2 23 23 H 1.08995 * 109.47098 * 186.05668 * 1 2 3 24 24 H 1.09006 * 109.46607 * 66.06448 * 1 2 3 25 25 H 1.08995 * 109.47698 * 306.06388 * 1 2 3 26 26 H 0.96996 * 120.00022 * 179.97438 * 7 6 4 27 27 H 1.09005 * 113.37454 * 336.48975 * 13 12 2 28 28 H 1.09004 * 113.37444 * 106.64256 * 13 12 2 29 29 H 1.08995 * 109.09444 * 88.11715 * 16 14 13 30 30 H 1.09006 * 109.77277 * 328.36542 * 16 14 13 31 31 H 1.09003 * 110.05534 * 344.51480 * 17 16 14 32 32 H 1.08998 * 110.06256 * 222.96726 * 17 16 14 33 33 H 1.08999 * 109.92986 * 164.18342 * 18 17 16 34 34 H 1.08998 * 109.92954 * 42.96070 * 18 17 16 35 35 H 1.08996 * 108.38394 * 301.45880 * 19 18 17 36 36 H 1.09003 * 108.23944 * 184.21156 * 19 18 17 37 37 H 1.08996 * 108.87319 * 153.18509 * 20 19 18 38 38 H 1.08995 * 108.86789 * 34.75904 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6554 -1.5869 -1.1313 6 6 1.6967 -0.2413 -2.4827 7 7 1.7109 -1.0554 -3.5155 8 14 1.2216 1.5507 -2.7124 9 1 2.4327 2.3461 -3.0373 10 1 0.2419 1.6647 -3.8226 11 1 0.6124 2.0657 -1.4599 12 7 2.0197 -0.6925 1.1995 13 6 1.8349 0.1390 2.4015 14 6 3.2265 -0.3031 2.8732 15 1 3.2504 -1.2135 3.4722 16 6 4.0451 0.8675 3.4457 17 6 5.5441 0.6038 3.2537 18 6 5.9994 1.4997 2.0686 19 6 5.5191 0.8410 0.8088 20 6 4.0191 0.7255 0.6816 21 6 3.4738 -0.5184 1.3526 22 1 4.0506 -1.4142 1.1227 23 1 -0.3633 -1.0219 0.1084 24 1 -0.3633 0.4170 -0.9394 25 1 -0.3634 0.6049 0.8307 26 1 1.4744 -0.7254 -4.3964 27 1 1.7703 1.2052 2.1842 28 1 1.0286 -0.2082 3.0477 29 1 3.8298 0.9665 4.5096 30 1 3.7734 1.7917 2.9355 31 1 5.7112 -0.4464 3.0141 32 1 6.0901 0.8736 4.1577 33 1 7.0867 1.5760 2.0569 34 1 5.5572 2.4916 2.1615 35 1 5.9463 -0.1605 0.7601 36 1 5.8929 1.4141 -0.0397 37 1 3.7559 0.6999 -0.3758 38 1 3.5582 1.6023 1.1365 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708316786.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:48 Heat of formation + Delta-G solvation = 7.595850 kcal Electronic energy + Delta-G solvation = -16646.488634 eV Core-core repulsion = 14295.704859 eV Total energy + Delta-G solvation = -2350.783774 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.04317 -37.32523 -35.41152 -33.36922 -32.30886 -29.25713 -27.75905 -26.50308 -24.97677 -23.24156 -21.81642 -21.09874 -18.97297 -18.63144 -17.19561 -16.91328 -16.27483 -15.93130 -14.92695 -14.85904 -14.53438 -14.46680 -14.04592 -13.64854 -13.50957 -13.33822 -12.87385 -12.83709 -12.67663 -12.42258 -12.11889 -11.86858 -11.74407 -11.61341 -11.38682 -11.15684 -11.05298 -10.81977 -10.68217 -10.47051 -9.34625 -8.34774 -6.24163 1.28561 1.33114 1.41841 2.32243 2.95856 3.37732 3.48115 3.78382 4.06346 4.20561 4.27004 4.29402 4.38055 4.51757 4.54384 4.56029 4.72437 4.76216 4.82830 4.86028 4.90575 4.97852 5.01472 5.05259 5.19506 5.25143 5.31098 5.34326 5.39395 5.47300 5.54770 5.59054 5.66084 5.78119 5.85608 6.19840 6.67963 6.75974 7.34701 8.82668 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.032782 B = 0.010165 C = 0.008998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.929211 B = 2753.988324 C = 3111.148842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.159 3.841 3 H 0.009 0.991 4 C -0.508 4.508 5 H 0.026 0.974 6 C 0.027 3.973 7 N -0.932 5.932 8 Si 0.917 3.083 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.237 1.237 12 N -0.486 5.486 13 C 0.000 4.000 14 C -0.098 4.098 15 H 0.105 0.895 16 C -0.106 4.106 17 C -0.115 4.115 18 C -0.112 4.112 19 C -0.110 4.110 20 C -0.124 4.124 21 C 0.051 3.949 22 H 0.057 0.943 23 H 0.041 0.959 24 H 0.037 0.963 25 H 0.050 0.950 26 H 0.265 0.735 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.048 0.952 37 H 0.052 0.948 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.685 7.780 14.526 17.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.051 3.949 3 H 0.026 0.974 4 C -0.546 4.546 5 H 0.045 0.955 6 C -0.172 4.172 7 N -0.571 5.571 8 Si 0.741 3.259 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.160 1.160 12 N -0.207 5.207 13 C -0.129 4.129 14 C -0.117 4.117 15 H 0.123 0.877 16 C -0.144 4.144 17 C -0.153 4.153 18 C -0.149 4.149 19 C -0.148 4.148 20 C -0.162 4.162 21 C -0.059 4.059 22 H 0.075 0.925 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.311 7.088 14.246 16.775 hybrid contribution -0.117 0.977 -1.282 1.616 sum 5.194 8.065 12.964 16.127 Atomic orbital electron populations 1.21967 0.97403 1.00301 0.99314 1.19941 0.92586 0.92695 0.89713 0.97362 1.20855 1.31538 1.12113 0.90095 0.95542 1.25624 0.94798 1.01149 0.95649 1.70199 1.49398 1.36310 1.01148 0.86275 0.78553 0.82025 0.79063 1.19985 1.21078 1.16043 1.68713 1.07628 1.41917 1.02485 1.23802 0.98703 0.96616 0.93820 1.23436 0.94452 0.99560 0.94268 0.87659 1.21925 0.94865 0.96504 1.01092 1.22134 0.95143 0.99655 0.98341 1.21613 1.00870 0.98542 0.93877 1.20535 0.94366 1.00908 0.98983 1.21112 0.96787 0.97296 1.01055 1.23010 0.90653 0.96672 0.95528 0.92492 0.93969 0.94440 0.93110 0.92580 0.92104 0.89950 0.90386 0.91984 0.92201 0.90124 0.90563 0.91445 0.93082 0.93338 0.92935 0.92049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.92 8.57 71.98 0.62 -5.31 16 2 C 0.16 7.59 0.84 44.17 0.04 7.63 16 3 H 0.01 0.42 4.48 -2.39 -0.01 0.41 16 4 C -0.51 -29.39 7.31 25.60 0.19 -29.21 16 5 H 0.03 1.74 8.01 -2.91 -0.02 1.72 16 6 C 0.03 1.57 5.18 84.65 0.44 2.01 16 7 N -0.93 -58.54 13.96 21.44 0.30 -58.24 16 8 Si 0.92 43.83 25.87 68.60 1.77 45.60 16 9 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 10 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 11 H -0.24 -10.42 5.83 99.48 0.58 -9.84 16 12 N -0.49 -20.62 6.09 -870.46 -5.30 -25.92 16 13 C 0.00 -0.01 6.24 84.30 0.53 0.51 16 14 C -0.10 -2.79 4.28 -9.46 -0.04 -2.83 16 15 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 16 C -0.11 -2.34 5.05 31.03 0.16 -2.18 16 17 C -0.12 -2.34 5.84 31.55 0.18 -2.15 16 18 C -0.11 -2.43 5.84 30.46 0.18 -2.26 16 19 C -0.11 -3.23 5.13 28.99 0.15 -3.08 16 20 C -0.12 -4.50 3.30 29.44 0.10 -4.41 16 21 C 0.05 1.91 3.38 43.16 0.15 2.06 16 22 H 0.06 2.35 8.02 -2.39 -0.02 2.33 16 23 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.04 1.71 5.13 -2.38 -0.01 1.70 16 25 H 0.05 1.93 7.82 -2.39 -0.02 1.91 16 26 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 27 H 0.06 1.94 6.59 -2.38 -0.02 1.93 16 28 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 29 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.06 1.45 5.17 -2.38 -0.01 1.43 16 31 H 0.06 1.34 7.36 -2.39 -0.02 1.32 16 32 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.07 1.40 7.55 -2.39 -0.02 1.38 16 35 H 0.05 1.55 7.70 -2.39 -0.02 1.53 16 36 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.05 2.38 5.63 -2.39 -0.01 2.36 16 38 H 0.06 2.08 5.02 -2.39 -0.01 2.06 16 Total: -1.00 -65.30 270.72 0.35 -64.96 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 0.90 Total: 12.81 kcal Atomic # 6 Polarization: -41.88 SS G_CDS: 2.68 Total: -39.20 kcal Atomic # 7 Polarization: -79.16 SS G_CDS: -5.00 Total: -84.16 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.77 Total: 45.60 kcal Total: -65.30 0.35 -64.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708316786.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.551 kcal (2) G-P(sol) polarization free energy of solvation -65.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds