Wall clock time and date at job start Mon Mar 30 2020 02:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47800 * 111.00171 * 2 1 4 4 C 1.45869 * 112.82873 * 206.06550 * 3 2 1 5 5 C 1.54509 * 111.59519 * 298.73730 * 4 3 2 6 6 C 1.50456 * 108.84902 * 77.20409 * 5 4 3 7 7 C 1.54285 * 113.02888 * 267.84121 * 6 5 4 8 8 H 1.09006 * 108.92123 * 281.06543 * 7 6 5 9 9 C 1.50698 * 108.92087 * 162.41958 * 7 6 5 10 10 H 1.08003 * 120.00251 * 239.99475 * 9 7 6 11 11 C 1.37881 * 120.00175 * 59.99536 * 9 7 6 12 12 N 1.31520 * 119.99713 * 0.02562 * 11 9 7 13 13 Si 1.86801 * 120.00287 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.46978 * 90.00094 * 13 11 9 15 15 H 1.48495 * 109.46939 * 209.99975 * 13 11 9 16 16 H 1.48499 * 109.46972 * 330.00114 * 13 11 9 17 17 C 1.44123 * 110.83584 * 121.98993 * 2 1 3 18 18 H 1.09003 * 108.98630 * 261.24014 * 17 2 1 19 19 C 1.53000 * 108.97987 * 20.04093 * 17 2 1 20 20 C 1.52994 * 117.49923 * 256.46635 * 19 17 2 21 21 C 1.52991 * 117.50031 * 187.80565 * 19 17 2 22 22 H 1.08999 * 109.47097 * 52.15917 * 1 2 3 23 23 H 1.09000 * 109.46760 * 172.15356 * 1 2 3 24 24 H 1.08990 * 109.47143 * 292.15796 * 1 2 3 25 25 H 1.09009 * 108.79384 * 85.23910 * 3 2 1 26 26 H 1.08997 * 108.79702 * 326.89761 * 3 2 1 27 27 H 1.08995 * 109.05372 * 59.27630 * 4 3 2 28 28 H 1.08999 * 109.05361 * 178.18958 * 4 3 2 29 29 H 1.09004 * 109.57341 * 197.01551 * 5 4 3 30 30 H 1.09002 * 109.57129 * 317.39144 * 5 4 3 31 31 H 1.09004 * 108.76891 * 28.75402 * 6 5 4 32 32 H 1.08995 * 108.76985 * 146.92204 * 6 5 4 33 33 H 0.96997 * 119.99944 * 180.02562 * 12 11 9 34 34 H 1.09005 * 115.54739 * 42.13533 * 19 17 2 35 35 H 1.09000 * 117.50355 * 359.97438 * 20 19 17 36 36 H 1.08996 * 117.49816 * 145.01890 * 20 19 17 37 37 H 1.09000 * 117.50262 * 214.98234 * 21 19 17 38 38 H 1.09006 * 117.50019 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9987 1.3798 0.0000 4 6 3.3290 1.4753 -0.5907 5 6 4.3609 0.6336 0.1928 6 6 4.1797 -0.8160 -0.1673 7 6 3.2190 -1.5588 0.7843 8 1 3.7526 -1.8078 1.7017 9 6 2.7647 -2.8341 0.1225 10 1 1.7143 -3.0001 -0.0662 11 6 3.6899 -3.7891 -0.2422 12 7 4.9689 -3.5872 -0.0119 13 14 3.1268 -5.3697 -1.0633 14 1 3.1080 -5.1827 -2.5364 15 1 4.0629 -6.4687 -0.7157 16 1 1.7618 -5.7139 -0.5906 17 6 1.9816 -0.7136 1.1424 18 1 2.2545 0.0044 1.9159 19 6 0.8883 -1.6366 1.6842 20 6 0.1584 -1.1971 2.9550 21 6 1.1606 -2.3528 3.0084 22 1 -0.3633 0.6304 -0.8116 23 1 -0.3633 -1.0181 -0.1403 24 1 -0.3633 0.3876 0.9517 25 1 2.0446 1.7384 1.0284 26 1 1.3176 2.0175 -0.5635 27 1 3.2876 1.1195 -1.6201 28 1 3.6453 2.5184 -0.5885 29 1 5.3690 0.9525 -0.0722 30 1 4.2034 0.7665 1.2631 31 1 3.7865 -0.8788 -1.1820 32 1 5.1517 -1.3084 -0.1392 33 1 5.6199 -4.2589 -0.2688 34 1 0.3101 -2.1728 0.9316 35 1 0.4574 -0.2506 3.4054 36 1 -0.8998 -1.4444 3.0386 37 1 0.7613 -3.3601 3.1273 38 1 2.1189 -2.1668 3.4935 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709963048.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:51 Heat of formation + Delta-G solvation = 32.512277 kcal Electronic energy + Delta-G solvation = -16751.332451 eV Core-core repulsion = 14401.629134 eV Total energy + Delta-G solvation = -2349.703317 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.25565 -35.96933 -33.84681 -32.59549 -30.44654 -27.29309 -25.40960 -24.27583 -22.51094 -21.73608 -20.22836 -19.73399 -18.08013 -16.01880 -15.71077 -15.09996 -14.58459 -13.94726 -13.81607 -13.15728 -12.86432 -12.60627 -12.27620 -11.96982 -11.91742 -11.38297 -10.99646 -10.92868 -10.75087 -10.73817 -10.53874 -10.06316 -9.87722 -9.78301 -9.57085 -9.39878 -9.21891 -8.85116 -8.39926 -8.15136 -7.35723 -5.80789 -3.79949 3.40268 3.46843 3.49201 4.47091 4.58580 4.66683 5.31402 5.38505 5.51048 5.61376 5.69752 5.81263 5.84032 5.93707 6.00110 6.07528 6.16496 6.19104 6.22620 6.39970 6.42009 6.52959 6.55500 6.65849 6.69803 6.85352 6.92434 6.97915 7.21387 7.41041 7.60408 7.84452 7.91209 8.03361 8.26740 8.29850 8.69921 9.19940 9.80489 11.27170 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.022426 B = 0.012749 C = 0.009894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.234454 B = 2195.643557 C = 2829.318796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.511 5.511 3 C 0.062 3.938 4 C -0.113 4.113 5 C -0.116 4.116 6 C -0.097 4.097 7 C 0.069 3.931 8 H 0.021 0.979 9 C -0.480 4.480 10 H 0.056 0.944 11 C 0.056 3.944 12 N -0.897 5.897 13 Si 0.883 3.117 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.277 1.277 17 C 0.127 3.873 18 H 0.019 0.981 19 C -0.117 4.117 20 C -0.210 4.210 21 C -0.159 4.159 22 H 0.050 0.950 23 H 0.070 0.930 24 H 0.020 0.980 25 H 0.023 0.977 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.042 0.958 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.255 0.745 34 H 0.109 0.891 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.268 7.543 2.240 10.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.234 5.234 3 C -0.065 4.065 4 C -0.151 4.151 5 C -0.153 4.153 6 C -0.136 4.136 7 C 0.050 3.950 8 H 0.039 0.961 9 C -0.518 4.518 10 H 0.074 0.926 11 C -0.144 4.144 12 N -0.537 5.537 13 Si 0.712 3.288 14 H -0.210 1.210 15 H -0.217 1.217 16 H -0.203 1.203 17 C 0.018 3.982 18 H 0.037 0.963 19 C -0.135 4.135 20 C -0.247 4.247 21 C -0.197 4.197 22 H 0.069 0.931 23 H 0.088 0.912 24 H 0.038 0.962 25 H 0.041 0.959 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.126 0.874 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.940 7.207 1.778 9.508 hybrid contribution -0.513 -0.565 0.251 0.803 sum -6.453 6.642 2.029 9.480 Atomic orbital electron populations 1.22442 0.88940 1.01846 0.98740 1.61728 1.06127 1.12123 1.43440 1.20957 0.96898 0.90014 0.98654 1.20601 0.95069 0.98444 1.01019 1.21494 0.96511 0.98770 0.98547 1.21231 1.01763 0.90374 1.00196 1.19058 0.88758 0.92273 0.94926 0.96123 1.21144 0.92971 1.00520 1.37201 0.92575 1.24938 0.95030 0.97995 0.96390 1.69931 1.00449 1.34617 1.48750 0.86743 0.78241 0.83944 0.79875 1.21049 1.21712 1.20264 1.21296 0.95365 0.93012 0.88481 0.96325 1.22439 0.99569 1.01327 0.90209 1.23131 0.97259 0.99255 1.05042 1.22689 0.99378 0.95694 1.01922 0.93122 0.91169 0.96192 0.95868 0.92811 0.91564 0.93415 0.93926 0.93707 0.93400 0.91163 0.93522 0.87352 0.90182 0.89992 0.89579 0.89239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 8.39 60.06 0.50 0.97 16 2 N -0.51 -9.74 4.47 -239.81 -1.07 -10.81 16 3 C 0.06 1.05 4.97 -6.70 -0.03 1.02 16 4 C -0.11 -1.94 5.53 -29.31 -0.16 -2.10 16 5 C -0.12 -2.26 5.60 -27.21 -0.15 -2.41 16 6 C -0.10 -2.32 4.27 -27.33 -0.12 -2.44 16 7 C 0.07 1.68 1.90 -90.54 -0.17 1.51 16 8 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 9 C -0.48 -12.80 7.66 -34.44 -0.26 -13.06 16 10 H 0.06 1.50 6.01 -52.48 -0.32 1.18 16 11 C 0.06 1.55 5.30 -17.82 -0.09 1.45 16 12 N -0.90 -25.87 11.53 55.43 0.64 -25.23 16 13 Si 0.88 21.69 29.54 -169.99 -5.02 16.67 16 14 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 15 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 C 0.13 2.60 1.69 -68.64 -0.12 2.49 16 18 H 0.02 0.39 6.30 -51.93 -0.33 0.06 16 19 C -0.12 -2.23 2.04 -90.63 -0.18 -2.41 16 20 C -0.21 -3.35 9.33 -26.70 -0.25 -3.60 16 21 C -0.16 -2.89 10.00 -26.70 -0.27 -3.16 16 22 H 0.05 0.73 7.84 -51.93 -0.41 0.32 16 23 H 0.07 1.17 6.19 -51.93 -0.32 0.85 16 24 H 0.02 0.30 7.02 -51.93 -0.36 -0.06 16 25 H 0.02 0.39 7.24 -51.92 -0.38 0.01 16 26 H 0.05 0.80 7.62 -51.93 -0.40 0.40 16 27 H 0.07 1.20 7.59 -51.93 -0.39 0.80 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.04 0.87 7.15 -51.93 -0.37 0.50 16 31 H 0.05 1.22 7.21 -51.93 -0.37 0.84 16 32 H 0.07 1.87 6.64 -51.93 -0.34 1.52 16 33 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.11 2.17 5.38 -51.93 -0.28 1.89 16 35 H 0.08 1.24 8.08 -51.93 -0.42 0.82 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 LS Contribution 280.96 15.07 4.23 4.23 Total: -1.00 -27.91 280.96 -8.89 -36.80 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -6.36 Total: 0.09 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: -1.31 Total: -21.75 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: -0.43 Total: -36.05 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -27.91 -8.89 -36.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709963048.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.314 kcal (2) G-P(sol) polarization free energy of solvation -27.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds