Wall clock time and date at job start Mon Mar 30 2020 02:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47347 * 2 1 4 4 C 1.53005 * 109.47127 * 120.00346 * 2 1 3 5 5 C 1.50699 * 109.47003 * 184.99778 * 4 2 1 6 6 H 1.07995 * 119.99766 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99721 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00118 * 359.97438 * 7 5 4 9 9 Si 1.86809 * 120.00013 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46637 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47209 * 119.99575 * 9 7 5 12 12 H 1.48500 * 109.47064 * 240.00171 * 9 7 5 13 13 N 1.46906 * 109.46729 * 239.99770 * 2 1 3 14 14 C 1.48806 * 111.18778 * 311.09787 * 13 2 1 15 15 C 1.54936 * 103.34980 * 159.50408 * 14 13 2 16 16 C 1.54599 * 102.92012 * 322.68910 * 15 14 13 17 17 C 1.47896 * 110.99419 * 68.43355 * 13 2 1 18 18 H 1.09001 * 109.92303 * 333.70460 * 17 13 2 19 19 C 1.53010 * 109.91940 * 94.80224 * 17 13 2 20 20 C 1.52996 * 117.49967 * 179.59357 * 19 17 13 21 21 C 1.52993 * 117.49855 * 248.21989 * 19 17 13 22 22 H 1.08999 * 109.47286 * 187.70532 * 1 2 3 23 23 H 1.09000 * 109.46795 * 307.70601 * 1 2 3 24 24 H 1.08997 * 109.47083 * 67.70406 * 1 2 3 25 25 H 1.09004 * 109.47008 * 304.99852 * 4 2 1 26 26 H 1.09004 * 109.47266 * 64.99340 * 4 2 1 27 27 H 0.97003 * 119.99504 * 180.02562 * 8 7 5 28 28 H 1.09005 * 110.51912 * 41.06983 * 14 13 2 29 29 H 1.08997 * 110.84013 * 278.08933 * 14 13 2 30 30 H 1.08993 * 110.72439 * 204.33156 * 15 14 13 31 31 H 1.09005 * 110.72031 * 81.04674 * 15 14 13 32 32 H 1.08989 * 110.30854 * 263.03930 * 16 15 14 33 33 H 1.09005 * 110.30638 * 140.87283 * 16 15 14 34 34 H 1.08996 * 115.55570 * 33.90449 * 19 17 13 35 35 H 1.08994 * 117.50318 * 0.02562 * 20 19 17 36 36 H 1.08999 * 117.49515 * 214.97968 * 20 19 17 37 37 H 1.09000 * 117.50014 * 145.02002 * 21 19 17 38 38 H 1.09000 * 117.51977 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3127 6 1 4.0789 -0.0863 0.5391 7 6 4.2304 -1.1937 2.3577 8 7 3.5764 -1.8380 3.2993 9 14 6.0921 -1.0614 2.4367 10 1 6.5836 -0.2910 1.2662 11 1 6.4862 -0.3662 3.6883 12 1 6.6863 -2.4222 2.4180 13 7 2.0196 -0.6926 -1.1995 14 6 1.3389 -2.0036 -1.3790 15 6 1.5554 -2.3163 -2.8810 16 6 1.4279 -0.9262 -3.5454 17 6 1.7177 0.0851 -2.4207 18 1 0.8438 0.7148 -2.2535 19 6 2.9206 0.9526 -2.7970 20 6 2.7982 1.8261 -4.0471 21 6 2.7690 2.4687 -2.6589 22 1 -0.3634 -1.0184 0.1378 23 1 -0.3633 0.6285 0.8131 24 1 -0.3633 0.3899 -0.9508 25 1 1.6054 -0.2618 2.1370 26 1 1.7516 -1.7716 1.2056 27 1 4.0609 -2.2448 4.0347 28 1 0.2761 -1.9163 -1.1535 29 1 1.8015 -2.7692 -0.7561 30 1 0.7836 -2.9921 -3.2493 31 1 2.5479 -2.7345 -3.0487 32 1 0.4192 -0.7830 -3.9323 33 1 2.1597 -0.8213 -4.3464 34 1 3.8977 0.5223 -2.5774 35 1 1.8606 1.7832 -4.6013 36 1 3.6948 1.9706 -4.6499 37 1 3.6464 3.0360 -2.3484 38 1 1.8124 2.8486 -2.3004 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710000703.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:04 Heat of formation + Delta-G solvation = 3.401566 kcal Electronic energy + Delta-G solvation = -16151.784522 eV Core-core repulsion = 13800.818870 eV Total energy + Delta-G solvation = -2350.965652 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.65984 -37.55304 -35.63425 -34.06486 -30.22588 -29.45037 -29.05535 -25.27290 -23.68544 -23.32013 -22.45027 -20.57804 -20.14273 -18.35797 -17.22510 -16.76759 -16.40032 -15.74138 -15.18389 -15.04649 -14.35640 -14.21933 -13.88706 -13.52468 -13.43772 -12.82899 -12.79368 -12.59728 -12.49737 -12.32729 -12.28348 -12.13352 -11.90329 -11.72286 -11.26287 -11.23245 -11.09539 -10.87772 -10.62750 -10.49230 -8.94564 -8.10716 -6.15071 1.38946 1.39744 1.53202 2.46253 2.92786 3.19182 3.29812 3.85177 3.88415 4.01828 4.16375 4.22566 4.28310 4.32442 4.43209 4.50896 4.58004 4.66016 4.79842 4.82730 4.91642 4.99330 5.04425 5.09398 5.16790 5.19058 5.21519 5.31814 5.35999 5.41014 5.48959 5.50270 5.72366 5.89297 6.32514 6.38882 6.57449 6.98724 7.50461 9.01728 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.024832 B = 0.008987 C = 0.008001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.319850 B = 3115.018483 C = 3498.553060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.090 3.910 3 H 0.058 0.942 4 C 0.040 3.960 5 C -0.494 4.494 6 H 0.055 0.945 7 C -0.007 4.007 8 N -0.941 5.941 9 Si 0.956 3.044 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.282 1.282 13 N -0.508 5.508 14 C 0.030 3.970 15 C -0.116 4.116 16 C -0.114 4.114 17 C 0.091 3.909 18 H 0.052 0.948 19 C -0.146 4.146 20 C -0.154 4.154 21 C -0.191 4.191 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.067 0.933 25 H -0.011 1.011 26 H -0.008 1.008 27 H 0.258 0.742 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.346 4.226 -15.407 16.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.019 4.019 3 H 0.076 0.924 4 C 0.003 3.997 5 C -0.533 4.533 6 H 0.073 0.927 7 C -0.202 4.202 8 N -0.583 5.583 9 Si 0.782 3.218 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.209 1.209 13 N -0.231 5.231 14 C -0.098 4.098 15 C -0.154 4.154 16 C -0.152 4.152 17 C -0.018 4.018 18 H 0.070 0.930 19 C -0.165 4.165 20 C -0.191 4.191 21 C -0.228 4.228 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.086 0.914 25 H 0.007 0.993 26 H 0.010 0.990 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.106 0.894 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.749 4.084 -15.180 16.421 hybrid contribution 0.235 -0.030 0.904 0.935 sum -4.514 4.054 -14.276 15.511 Atomic orbital electron populations 1.22401 0.97285 1.01726 1.01886 1.21655 0.91974 0.97037 0.91192 0.92405 1.18972 0.95231 0.94068 0.91426 1.21482 0.93261 1.32082 1.06454 0.92709 1.25856 1.02878 0.95721 0.95779 1.70103 1.36961 1.38171 1.13104 0.85528 0.80713 0.77678 0.77891 1.19097 1.20674 1.20853 1.64698 1.54599 1.02756 1.01057 1.23275 0.97099 0.92058 0.97365 1.22446 1.02199 0.97554 0.93170 1.22395 1.02474 0.93212 0.97079 1.21999 0.94573 0.94739 0.90446 0.93036 1.22167 0.99268 0.91936 1.03144 1.22980 1.03953 1.02231 0.89957 1.23017 1.02837 0.95503 1.01415 0.92755 0.92411 0.91446 0.99268 0.98956 0.93291 0.92896 0.93281 0.89252 0.91889 0.89948 0.90006 0.89848 0.87461 0.87948 0.89422 0.89029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.00 8.17 71.98 0.59 -5.41 16 2 C 0.09 3.82 2.22 44.92 0.10 3.92 16 3 H 0.06 2.54 8.10 -2.39 -0.02 2.53 16 4 C 0.04 2.17 4.46 29.85 0.13 2.31 16 5 C -0.49 -29.02 8.84 25.60 0.23 -28.79 16 6 H 0.05 3.22 7.74 -2.91 -0.02 3.20 16 7 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 8 N -0.94 -59.07 13.29 21.45 0.28 -58.79 16 9 Si 0.96 46.74 29.54 68.60 2.03 48.76 16 10 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 12 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 13 N -0.51 -19.62 4.59 -832.31 -3.82 -23.44 16 14 C 0.03 1.04 5.59 86.60 0.48 1.52 16 15 C -0.12 -3.09 7.06 31.80 0.22 -2.86 16 16 C -0.11 -2.71 6.36 31.48 0.20 -2.51 16 17 C 0.09 2.72 2.40 45.06 0.11 2.83 16 18 H 0.05 1.50 5.82 -2.39 -0.01 1.48 16 19 C -0.15 -4.31 5.28 -10.79 -0.06 -4.36 16 20 C -0.15 -3.31 9.72 30.59 0.30 -3.02 16 21 C -0.19 -4.99 10.18 30.59 0.31 -4.68 16 22 H 0.05 1.88 6.41 -2.39 -0.02 1.86 16 23 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.07 1.96 6.29 -2.39 -0.02 1.94 16 25 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 26 H -0.01 -0.46 7.13 -2.38 -0.02 -0.48 16 27 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 28 H 0.05 1.74 5.47 -2.38 -0.01 1.73 16 29 H 0.05 2.03 7.68 -2.39 -0.02 2.01 16 30 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 32 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.08 1.79 7.43 -2.38 -0.02 1.77 16 34 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 35 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.09 2.31 8.07 -2.39 -0.02 2.29 16 Total: -1.00 -66.05 296.20 2.57 -63.48 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 1.00 Total: 10.98 kcal Atomic # 6 Polarization: -44.07 SS G_CDS: 3.08 Total: -40.99 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -3.54 Total: -82.23 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.76 kcal Total: -66.05 2.57 -63.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710000703.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.878 kcal (2) G-P(sol) polarization free energy of solvation -66.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds