Wall clock time and date at job start Mon Mar 30 2020 02:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46959 * 2 1 4 4 C 1.53005 * 109.47132 * 119.99610 * 2 1 3 5 5 C 1.50701 * 109.46857 * 185.06032 * 4 2 1 6 6 H 1.08000 * 120.00005 * 359.82144 * 5 4 2 7 7 C 1.37876 * 119.99858 * 179.82065 * 5 4 2 8 8 N 1.31518 * 119.99868 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00150 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47093 * 89.99740 * 9 7 5 11 11 H 1.48503 * 109.47194 * 209.99883 * 9 7 5 12 12 H 1.48499 * 109.46934 * 329.99816 * 9 7 5 13 13 N 1.46897 * 109.47084 * 239.99760 * 2 1 3 14 14 C 1.47448 * 111.00090 * 65.38346 * 13 2 1 15 15 C 1.54309 * 107.37059 * 236.66148 * 14 13 2 16 16 C 1.55395 * 102.90222 * 337.89214 * 15 14 13 17 17 C 1.47835 * 111.00140 * 304.53900 * 13 2 1 18 18 H 1.08999 * 110.37517 * 27.53881 * 17 13 2 19 19 C 1.53000 * 110.37374 * 265.19411 * 17 13 2 20 20 C 1.53009 * 117.49501 * 242.73465 * 19 17 13 21 21 C 1.53006 * 117.50002 * 174.07801 * 19 17 13 22 22 H 1.09002 * 109.47661 * 307.45411 * 1 2 3 23 23 H 1.09000 * 109.47364 * 67.45734 * 1 2 3 24 24 H 1.09005 * 109.47311 * 187.45337 * 1 2 3 25 25 H 1.08996 * 109.47042 * 305.06011 * 4 2 1 26 26 H 1.08997 * 109.46809 * 65.06115 * 4 2 1 27 27 H 0.96998 * 119.99774 * 179.97438 * 8 7 5 28 28 H 1.09002 * 109.88703 * 356.14661 * 14 13 2 29 29 H 1.08998 * 109.88796 * 117.16906 * 14 13 2 30 30 H 1.09000 * 110.71065 * 96.17786 * 15 14 13 31 31 H 1.08999 * 110.70746 * 219.41376 * 15 14 13 32 32 H 1.09005 * 110.87098 * 277.39995 * 16 15 14 33 33 H 1.08994 * 111.06312 * 153.65297 * 16 15 14 34 34 H 1.08997 * 115.55274 * 28.40521 * 19 17 13 35 35 H 1.08992 * 117.50206 * 359.97438 * 20 19 17 36 36 H 1.09004 * 117.49511 * 145.02690 * 20 19 17 37 37 H 1.08995 * 117.49706 * 214.97764 * 21 19 17 38 38 H 1.09001 * 117.49408 * 359.97436 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5418 -0.6135 1.3135 6 1 4.0790 -0.0862 0.5391 7 6 4.2299 -1.1882 2.3610 8 7 3.5757 -1.8299 3.3043 9 14 6.0914 -1.0542 2.4410 10 1 6.4676 0.1707 3.1915 11 1 6.6443 -2.2472 3.1312 12 1 6.6419 -0.9796 1.0638 13 7 2.0196 -0.6925 -1.1994 14 6 1.6552 0.0465 -2.4221 15 6 0.8525 -0.9173 -3.3210 16 6 1.2909 -2.3169 -2.8074 17 6 1.4585 -2.0573 -1.2894 18 1 0.4920 -2.1041 -0.7875 19 6 2.4267 -3.0726 -0.6790 20 6 3.0018 -4.1458 -1.6058 21 6 1.9489 -4.5213 -0.5600 22 1 -0.3634 0.6249 0.8158 23 1 -0.3634 0.3940 -0.9491 24 1 -0.3634 -1.0190 0.1333 25 1 1.6045 -0.2623 2.1369 26 1 1.7525 -1.7716 1.2052 27 1 4.0599 -2.2345 4.0410 28 1 1.0423 0.9103 -2.1645 29 1 2.5566 0.3731 -2.9406 30 1 -0.2188 -0.7738 -3.1800 31 1 1.1255 -0.7853 -4.3679 32 1 2.2364 -2.6175 -3.2587 33 1 0.5175 -3.0622 -2.9930 34 1 3.0738 -2.6897 0.1100 35 1 2.6900 -4.1287 -2.6500 36 1 4.0271 -4.4691 -1.4260 37 1 2.2820 -5.0914 0.3073 38 1 0.9446 -4.7508 -0.9161 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710000704.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:06 Heat of formation + Delta-G solvation = 10.211164 kcal Electronic energy + Delta-G solvation = -16502.551261 eV Core-core repulsion = 14151.880895 eV Total energy + Delta-G solvation = -2350.670366 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.82798 -37.39058 -35.67144 -33.91961 -30.03496 -29.55970 -29.01414 -25.16226 -24.26942 -23.09962 -21.92086 -21.19524 -19.50969 -18.29666 -17.11213 -16.68770 -16.51397 -16.09876 -15.14474 -14.83609 -14.39926 -14.13007 -13.77626 -13.48579 -13.22883 -12.92975 -12.76075 -12.70942 -12.45973 -12.32701 -12.18987 -11.97611 -11.79246 -11.59190 -11.33423 -11.14085 -11.00494 -10.74399 -10.50831 -10.43798 -8.82180 -8.06759 -6.09513 1.39736 1.40675 1.51789 2.47793 3.02482 3.25575 3.31785 3.83827 3.92476 4.17070 4.19572 4.26720 4.31791 4.38171 4.46250 4.57915 4.61431 4.69433 4.83255 4.84490 4.97591 4.99561 5.05816 5.12007 5.21082 5.23022 5.26641 5.36569 5.38431 5.47613 5.55014 5.77523 5.82162 5.96963 6.39773 6.51922 6.62248 7.03215 7.54555 9.04636 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.025295 B = 0.010577 C = 0.009113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.686448 B = 2646.536982 C = 3071.866266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.088 3.912 3 H 0.057 0.943 4 C 0.034 3.966 5 C -0.486 4.486 6 H 0.052 0.948 7 C 0.001 3.999 8 N -0.935 5.935 9 Si 0.945 3.055 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.269 1.269 13 N -0.522 5.522 14 C 0.036 3.964 15 C -0.130 4.130 16 C -0.123 4.123 17 C 0.109 3.891 18 H 0.050 0.950 19 C -0.152 4.152 20 C -0.174 4.174 21 C -0.182 4.182 22 H 0.055 0.945 23 H 0.068 0.932 24 H 0.050 0.950 25 H -0.017 1.017 26 H 0.011 0.989 27 H 0.256 0.744 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.119 0.881 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.083 -0.990 -13.278 14.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.021 4.021 3 H 0.076 0.924 4 C -0.003 4.003 5 C -0.525 4.525 6 H 0.070 0.930 7 C -0.195 4.195 8 N -0.578 5.578 9 Si 0.772 3.228 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.194 1.194 13 N -0.246 5.246 14 C -0.092 4.092 15 C -0.168 4.168 16 C -0.161 4.161 17 C 0.001 3.999 18 H 0.068 0.932 19 C -0.171 4.171 20 C -0.210 4.210 21 C -0.220 4.220 22 H 0.074 0.926 23 H 0.087 0.913 24 H 0.069 0.931 25 H 0.002 0.998 26 H 0.029 0.971 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.137 0.863 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.499 -1.078 -13.085 14.234 hybrid contribution 0.312 0.085 0.930 0.984 sum -5.187 -0.993 -12.155 13.253 Atomic orbital electron populations 1.22415 0.97395 1.01445 1.01954 1.21762 0.91926 0.97021 0.91400 0.92425 1.19115 0.95025 0.95195 0.90943 1.21348 0.93157 1.31955 1.06031 0.93008 1.25717 1.02034 0.95898 0.95869 1.70091 1.36667 1.38193 1.12807 0.85740 0.81685 0.77284 0.78104 1.20331 1.21386 1.19389 1.63411 1.58009 1.01784 1.01386 1.22863 0.98809 0.96725 0.90783 1.22786 0.99761 0.94112 1.00154 1.22941 1.02156 0.97648 0.93347 1.21955 0.94225 0.88008 0.95745 0.93239 1.22497 1.02577 0.89550 1.02445 1.23145 0.97710 1.03253 0.96920 1.22907 0.99698 0.98262 1.01113 0.92603 0.91295 0.93127 0.99847 0.97096 0.93484 0.92635 0.91460 0.90951 0.89083 0.90138 0.89680 0.88902 0.86344 0.90315 0.90741 0.87661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.89 8.48 71.98 0.61 -5.28 16 2 C 0.09 3.64 2.10 44.92 0.09 3.73 16 3 H 0.06 2.47 8.13 -2.38 -0.02 2.45 16 4 C 0.03 1.80 3.94 29.85 0.12 1.92 16 5 C -0.49 -27.70 7.37 25.60 0.19 -27.51 16 6 H 0.05 2.98 7.74 -2.91 -0.02 2.95 16 7 C 0.00 0.06 5.46 84.65 0.46 0.52 16 8 N -0.94 -57.46 13.29 21.45 0.28 -57.18 16 9 Si 0.95 46.11 29.54 68.60 2.03 48.13 16 10 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 11 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 12 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 13 N -0.52 -19.77 4.56 -835.65 -3.81 -23.58 16 14 C 0.04 1.04 6.23 86.64 0.54 1.58 16 15 C -0.13 -2.93 6.97 31.86 0.22 -2.71 16 16 C -0.12 -3.14 5.45 32.07 0.17 -2.97 16 17 C 0.11 3.77 2.00 45.39 0.09 3.86 16 18 H 0.05 1.79 5.39 -2.39 -0.01 1.78 16 19 C -0.15 -6.00 4.79 -10.79 -0.05 -6.05 16 20 C -0.17 -5.52 9.48 30.62 0.29 -5.23 16 21 C -0.18 -6.10 10.22 30.62 0.31 -5.79 16 22 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.07 1.96 6.51 -2.39 -0.02 1.94 16 24 H 0.05 1.75 6.19 -2.38 -0.01 1.74 16 25 H -0.02 -0.97 8.14 -2.39 -0.02 -0.98 16 26 H 0.01 0.60 5.70 -2.39 -0.01 0.59 16 27 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 28 H 0.06 1.53 6.42 -2.39 -0.02 1.52 16 29 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.08 2.06 6.10 -2.38 -0.01 2.04 16 33 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.09 4.76 5.35 -2.39 -0.01 4.75 16 35 H 0.12 3.06 5.73 -2.39 -0.01 3.05 16 36 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 37 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 38 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -63.96 286.03 2.57 -61.39 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 1.02 Total: 15.18 kcal Atomic # 6 Polarization: -46.99 SS G_CDS: 3.05 Total: -43.94 kcal Atomic # 7 Polarization: -77.23 SS G_CDS: -3.53 Total: -80.76 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Total: -63.96 2.57 -61.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710000704.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.598 kcal (2) G-P(sol) polarization free energy of solvation -63.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds