Wall clock time and date at job start Mon Mar 30 2020 02:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46973 * 2 1 4 4 C 1.50701 * 109.46906 * 119.99586 * 2 1 3 5 5 H 1.07997 * 119.99445 * 116.60523 * 4 2 1 6 6 C 1.37870 * 120.00165 * 296.60531 * 4 2 1 7 7 N 1.31518 * 120.00369 * 352.66288 * 6 4 2 8 8 Si 1.86802 * 120.00036 * 172.65971 * 6 4 2 9 9 H 1.48497 * 109.47272 * 265.06940 * 8 6 4 10 10 H 1.48505 * 109.47052 * 25.06384 * 8 6 4 11 11 H 1.48501 * 109.47564 * 145.06301 * 8 6 4 12 12 N 1.46898 * 109.47207 * 240.00126 * 2 1 3 13 13 C 1.46906 * 111.00071 * 85.00141 * 12 2 1 14 14 H 1.08996 * 112.88562 * 26.84425 * 13 12 2 15 15 C 1.53963 * 113.66035 * 255.49378 * 13 12 2 16 16 C 1.53230 * 86.24556 * 218.96419 * 15 13 12 17 17 H 1.09001 * 111.34624 * 275.49688 * 16 15 13 18 18 C 1.50508 * 115.71075 * 147.24693 * 16 15 13 19 19 C 1.51629 * 114.39671 * 290.09346 * 18 16 15 20 20 C 1.52600 * 111.06903 * 313.08824 * 19 18 16 21 21 C 1.52978 * 108.83657 * 63.69909 * 20 19 18 22 22 C 1.52534 * 87.68021 * 26.89106 * 16 15 13 23 23 H 1.08996 * 113.95568 * 218.48204 * 22 16 15 24 24 H 1.09001 * 109.47291 * 296.76702 * 1 2 3 25 25 H 1.09005 * 109.47253 * 56.76896 * 1 2 3 26 26 H 1.09000 * 109.47286 * 176.76711 * 1 2 3 27 27 H 0.96997 * 119.99582 * 179.97438 * 7 6 4 28 28 H 1.00898 * 110.99895 * 208.95192 * 12 2 1 29 29 H 1.08999 * 113.74888 * 333.29704 * 15 13 12 30 30 H 1.09004 * 113.74552 * 104.63131 * 15 13 12 31 31 H 1.09004 * 108.50164 * 51.36575 * 18 16 15 32 32 H 1.08999 * 108.50069 * 168.81626 * 18 16 15 33 33 H 1.09004 * 109.16200 * 73.49334 * 19 18 16 34 34 H 1.08995 * 109.16035 * 192.67739 * 19 18 16 35 35 H 1.09008 * 109.57695 * 183.50115 * 20 19 18 36 36 H 1.08999 * 109.58103 * 303.75956 * 20 19 18 37 37 H 1.09003 * 109.52107 * 56.25890 * 21 20 19 38 38 H 1.09005 * 109.51638 * 176.36644 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6072 -1.6193 1.1324 6 6 1.7579 -0.1998 2.4815 7 7 1.1851 0.9781 2.6000 8 14 2.1997 -1.1812 4.0083 9 1 1.0174 -1.9610 4.4548 10 1 3.3152 -2.1100 3.6942 11 1 2.6179 -0.2532 5.0896 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2227 -2.3469 14 1 2.2214 1.2629 -2.0524 15 6 0.9470 0.0151 -3.3657 16 6 2.0040 0.2730 -4.4447 17 1 2.1362 1.3400 -4.6236 18 6 1.8148 -0.4761 -5.7363 19 6 2.0565 -1.9696 -5.6354 20 6 3.3516 -2.2663 -4.8848 21 6 3.2151 -1.7636 -3.4464 22 6 3.0471 -0.2428 -3.4585 23 1 3.9898 0.3035 -3.4854 24 1 -0.3634 0.4628 0.9175 25 1 -0.3634 0.5632 -0.8596 26 1 -0.3634 -1.0260 -0.0580 27 1 0.9918 1.3370 3.4801 28 1 2.9173 -1.1204 -1.0287 29 1 0.5470 -0.9988 -3.3766 30 1 0.1710 0.7792 -3.3198 31 1 0.7946 -0.3136 -6.0842 32 1 2.4989 -0.0644 -6.4783 33 1 1.2228 -2.4321 -5.1069 34 1 2.1202 -2.3903 -6.6389 35 1 3.5332 -3.3411 -4.8804 36 1 4.1822 -1.7576 -5.3742 37 1 2.3426 -2.2227 -2.9814 38 1 4.1096 -2.0275 -2.8821 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712413568.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:42 Heat of formation + Delta-G solvation = -2.706099 kcal Electronic energy + Delta-G solvation = -15985.324596 eV Core-core repulsion = 13634.094095 eV Total energy + Delta-G solvation = -2351.230500 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.18973 -35.48579 -33.64189 -31.79380 -30.72344 -27.75602 -25.93189 -24.94608 -23.41331 -22.03646 -20.32749 -19.45076 -17.38679 -16.43147 -15.95351 -14.90073 -14.42538 -14.36986 -13.83699 -13.63285 -13.38834 -12.51276 -12.32772 -12.23437 -11.66258 -11.28871 -11.24010 -11.18917 -10.86061 -10.78982 -10.65535 -10.49960 -10.29372 -10.13674 -10.04910 -9.73668 -9.48542 -9.32650 -8.75195 -8.40174 -7.19845 -6.01963 -4.05019 3.31410 3.38258 3.41300 4.43225 4.77227 4.81296 4.92312 5.21751 5.28162 5.31326 5.40856 5.46763 5.59493 5.66173 5.81145 5.88435 5.93330 6.07806 6.13925 6.18867 6.32869 6.34553 6.37138 6.42060 6.47594 6.73343 6.88373 6.91254 6.98877 7.19213 7.27461 7.53381 7.82728 7.92665 8.25092 8.45885 8.75682 9.07511 9.60277 11.06683 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.048476 B = 0.006508 C = 0.006067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.463032 B = 4301.509275 C = 4613.931041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.209 3.791 3 H 0.004 0.996 4 C -0.519 4.519 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.274 1.274 11 H -0.288 1.288 12 N -0.674 5.674 13 C 0.066 3.934 14 H 0.059 0.941 15 C -0.118 4.118 16 C -0.105 4.105 17 H 0.073 0.927 18 C -0.099 4.099 19 C -0.114 4.114 20 C -0.115 4.115 21 C -0.101 4.101 22 C -0.106 4.106 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.008 0.992 26 H 0.031 0.969 27 H 0.260 0.740 28 H 0.332 0.668 29 H 0.085 0.915 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.086 0.914 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.308 -2.993 -14.021 14.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.102 3.898 3 H 0.022 0.978 4 C -0.558 4.558 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.199 1.199 11 H -0.214 1.214 12 N -0.305 5.305 13 C -0.045 4.045 14 H 0.077 0.923 15 C -0.157 4.157 16 C -0.124 4.124 17 H 0.092 0.908 18 C -0.137 4.137 19 C -0.152 4.152 20 C -0.153 4.153 21 C -0.139 4.139 22 C -0.125 4.125 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.027 0.973 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.151 0.849 29 H 0.103 0.897 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.105 0.895 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.620 -3.098 -14.027 14.457 hybrid contribution 0.910 0.260 1.176 1.509 sum 2.530 -2.838 -12.852 13.402 Atomic orbital electron populations 1.21617 0.98262 0.98675 0.99015 1.19157 0.92286 0.92557 0.85843 0.97805 1.21287 1.34141 1.09683 0.90647 0.92271 1.24922 0.95299 0.94698 0.99012 1.69966 1.43067 1.16297 1.23519 0.86568 0.78652 0.79942 0.82731 1.20677 1.19902 1.21387 1.60851 1.31582 1.32213 1.05838 1.23153 0.95237 0.95361 0.90755 0.92348 1.23028 0.96108 1.01724 0.94791 1.21516 0.98227 0.99133 0.93548 0.90826 1.20489 1.00989 0.95255 0.96961 1.21118 0.98328 0.96097 0.99642 1.21382 0.97329 1.00053 0.96528 1.21312 1.02934 0.93919 0.95688 1.22513 0.96862 0.96500 0.96663 0.91652 0.91680 0.97319 0.94984 0.93006 0.84937 0.89681 0.92753 0.92434 0.93124 0.92056 0.92762 0.92421 0.92642 0.89508 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.94 9.26 37.16 0.34 -2.60 16 2 C 0.21 5.36 2.49 -68.86 -0.17 5.18 16 3 H 0.00 0.12 7.47 -51.93 -0.39 -0.27 16 4 C -0.52 -14.38 8.53 -34.44 -0.29 -14.67 16 5 H 0.06 1.62 7.66 -52.49 -0.40 1.22 16 6 C 0.06 1.75 5.20 -17.82 -0.09 1.66 16 7 N -0.89 -25.91 11.91 55.43 0.66 -25.25 16 8 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 N -0.67 -14.30 5.24 -99.74 -0.52 -14.83 16 13 C 0.07 1.20 3.81 -66.55 -0.25 0.95 16 14 H 0.06 1.16 7.51 -51.93 -0.39 0.77 16 15 C -0.12 -1.91 7.00 -26.11 -0.18 -2.10 16 16 C -0.11 -1.44 3.63 -92.04 -0.33 -1.78 16 17 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 18 C -0.10 -1.16 5.50 -28.67 -0.16 -1.32 16 19 C -0.11 -1.30 5.75 -27.63 -0.16 -1.46 16 20 C -0.12 -1.36 5.90 -26.95 -0.16 -1.52 16 21 C -0.10 -1.42 4.36 -26.74 -0.12 -1.54 16 22 C -0.11 -1.59 4.20 -90.14 -0.38 -1.97 16 23 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 24 H 0.06 1.77 6.57 -51.93 -0.34 1.43 16 25 H 0.01 0.18 8.03 -51.93 -0.42 -0.24 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.33 6.97 7.33 -39.29 -0.29 6.68 16 29 H 0.08 1.43 7.40 -51.93 -0.38 1.04 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.74 7.94 -51.93 -0.41 0.33 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 1.38 6.51 -51.93 -0.34 1.04 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 289.80 15.07 4.37 4.37 Total: -1.00 -28.04 289.80 -9.20 -37.23 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -6.72 Total: 3.16 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: -1.96 Total: -21.16 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.14 Total: -40.07 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.04 -9.20 -37.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712413568.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.528 kcal (2) G-P(sol) polarization free energy of solvation -28.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds