Wall clock time and date at job start Mon Mar 30 2020 03:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46898 * 111.00026 * 2 1 4 4 C 1.50697 * 109.46997 * 66.05042 * 3 2 1 5 5 H 1.08004 * 119.99850 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99851 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99876 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 120.00202 * 359.97438 * 6 4 3 9 9 H 1.48501 * 109.46852 * 90.00421 * 8 6 4 10 10 H 1.48497 * 109.46948 * 210.00325 * 8 6 4 11 11 H 1.48495 * 109.46772 * 330.00654 * 8 6 4 12 12 C 1.46903 * 110.99799 * 236.04918 * 2 1 3 13 13 C 1.53009 * 109.46907 * 293.95343 * 12 2 1 14 14 C 1.52998 * 109.46769 * 180.02562 * 13 12 2 15 15 H 1.08999 * 115.55488 * 29.27566 * 14 13 12 16 16 C 1.53006 * 117.49469 * 243.60847 * 14 13 12 17 17 C 1.52997 * 117.51857 * 174.98178 * 14 13 12 18 18 H 1.09002 * 117.49910 * 359.97438 * 17 14 13 19 19 C 1.53001 * 117.49889 * 214.97079 * 17 14 13 20 20 C 1.53003 * 117.49800 * 128.60549 * 19 17 14 21 21 C 1.53002 * 117.50188 * 59.98279 * 19 17 14 22 22 H 1.08999 * 109.47426 * 183.95185 * 1 2 3 23 23 H 1.09004 * 109.47266 * 303.95091 * 1 2 3 24 24 H 1.08996 * 109.47411 * 63.94880 * 1 2 3 25 25 H 1.09006 * 109.46944 * 186.04623 * 3 2 1 26 26 H 1.08997 * 109.47120 * 306.04755 * 3 2 1 27 27 H 0.96993 * 120.00001 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.46938 * 173.95513 * 12 2 1 29 29 H 1.08996 * 109.47576 * 53.95249 * 12 2 1 30 30 H 1.08995 * 109.47010 * 59.99956 * 13 12 2 31 31 H 1.08993 * 109.46891 * 299.99773 * 13 12 2 32 32 H 1.08990 * 117.50086 * 359.97396 * 16 14 13 33 33 H 1.09004 * 117.49623 * 145.00280 * 16 14 13 34 34 H 1.09002 * 115.54417 * 274.30830 * 19 17 14 35 35 H 1.08994 * 117.50135 * 359.97438 * 20 19 17 36 36 H 1.09004 * 117.49813 * 145.01837 * 20 19 17 37 37 H 1.08991 * 117.49612 * 214.98068 * 21 19 17 38 38 H 1.08994 * 117.49504 * 0.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 1 1.0740 1.5113 2.0485 6 6 2.0269 3.3494 1.5285 7 7 1.7136 3.9392 2.6615 8 14 3.0000 4.2762 0.2310 9 1 2.0632 4.9798 -0.6815 10 1 3.8863 5.2678 0.8914 11 1 3.8237 3.3175 -0.5484 12 6 1.9954 -0.7659 -1.1377 13 6 1.6313 -2.2427 -0.9704 14 6 2.1802 -3.0404 -2.1550 15 1 3.0842 -2.6396 -2.6134 16 6 1.1677 -3.7282 -3.0732 17 6 2.0225 -4.5618 -2.1165 18 1 1.5280 -4.9947 -1.2468 19 6 3.1459 -5.4041 -2.7242 20 6 3.7314 -6.5264 -1.8648 21 6 4.5447 -5.2562 -2.1220 22 1 -0.3634 -1.0252 0.0708 23 1 -0.3634 0.5739 0.8525 24 1 -0.3634 0.4513 -0.9232 25 1 3.0798 1.3443 -0.1083 26 1 1.5611 1.9273 -0.8309 27 1 1.9882 4.8553 2.8235 28 1 3.0797 -0.6611 -1.1757 29 1 1.5611 -0.3872 -2.0628 30 1 0.5471 -2.3475 -0.9323 31 1 2.0657 -2.6214 -0.0453 32 1 0.1109 -3.6126 -2.8332 33 1 1.4059 -3.7798 -4.1357 34 1 3.0759 -5.5764 -3.7982 35 1 3.3165 -6.6645 -0.8664 36 1 4.0467 -7.4375 -2.3734 37 1 5.3949 -5.3316 -2.7998 38 1 4.6644 -4.5593 -1.2926 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714819790.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:10 Heat of formation + Delta-G solvation = 25.018503 kcal Electronic energy + Delta-G solvation = -14931.291536 eV Core-core repulsion = 12581.263264 eV Total energy + Delta-G solvation = -2350.028271 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.80615 -38.41448 -36.33674 -34.68071 -31.74826 -29.43425 -27.11842 -24.66711 -23.91724 -23.22872 -21.92827 -21.27197 -20.61004 -18.97387 -16.72400 -16.65145 -16.43142 -16.14456 -15.83284 -14.96882 -14.68083 -14.55006 -14.35887 -13.76500 -13.30913 -13.06179 -12.86690 -12.60558 -12.46080 -12.28607 -12.25691 -12.00802 -11.89481 -11.76120 -11.61621 -11.39412 -11.34890 -10.80097 -10.64381 -10.24730 -9.03570 -8.29188 -6.32764 1.33677 1.35729 1.46908 2.33925 2.67855 3.03462 3.11225 3.23569 3.71472 3.89149 3.96742 4.14913 4.21453 4.28370 4.37147 4.42172 4.56398 4.63328 4.63743 4.66981 4.76917 4.83070 4.88865 4.97166 5.02143 5.06117 5.10112 5.21008 5.25139 5.30016 5.31106 5.37355 5.49720 5.53180 5.98944 6.36985 6.65992 6.73413 7.31006 8.87538 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.043096 B = 0.004711 C = 0.004562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.557206 B = 5942.606024 C = 6136.618903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.552 5.552 3 C 0.170 3.830 4 C -0.519 4.519 5 H 0.038 0.962 6 C 0.007 3.993 7 N -0.948 5.948 8 Si 0.948 3.052 9 H -0.267 1.267 10 H -0.279 1.279 11 H -0.250 1.250 12 C 0.058 3.942 13 C -0.073 4.073 14 C -0.147 4.147 15 H 0.102 0.898 16 C -0.165 4.165 17 C -0.119 4.119 18 H 0.102 0.898 19 C -0.128 4.128 20 C -0.174 4.174 21 C -0.184 4.184 22 H 0.079 0.921 23 H 0.046 0.954 24 H 0.018 0.982 25 H 0.028 0.972 26 H -0.015 1.015 27 H 0.267 0.733 28 H 0.065 0.935 29 H 0.029 0.971 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.112 0.888 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.488 -18.141 -14.139 23.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.276 5.276 3 C 0.043 3.957 4 C -0.557 4.557 5 H 0.056 0.944 6 C -0.190 4.190 7 N -0.589 5.589 8 Si 0.772 3.228 9 H -0.192 1.192 10 H -0.205 1.205 11 H -0.174 1.174 12 C -0.070 4.070 13 C -0.111 4.111 14 C -0.166 4.166 15 H 0.120 0.880 16 C -0.202 4.202 17 C -0.137 4.137 18 H 0.120 0.880 19 C -0.146 4.146 20 C -0.210 4.210 21 C -0.221 4.221 22 H 0.098 0.902 23 H 0.065 0.935 24 H 0.037 0.963 25 H 0.046 0.954 26 H 0.003 0.997 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.048 0.952 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.130 0.870 35 H 0.110 0.890 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.662 -18.210 -13.609 22.889 hybrid contribution -0.008 1.290 -0.600 1.422 sum 2.654 -16.921 -14.208 22.254 Atomic orbital electron populations 1.22220 0.87611 1.01348 0.99630 1.61854 1.08322 1.14667 1.42725 1.19955 0.95181 0.86005 0.94544 1.21286 1.34937 0.97586 1.01885 0.94406 1.25864 0.96953 0.98393 0.97774 1.70049 1.48565 1.13908 1.26353 0.85696 0.79259 0.78694 0.79184 1.19223 1.20463 1.17398 1.22140 0.99622 0.94246 0.90966 1.21051 1.00496 0.92464 0.97056 1.22293 1.01171 0.93682 0.99457 0.87992 1.23215 0.96809 1.03067 0.97085 1.21864 0.99355 0.91382 1.01116 0.88043 1.21788 0.93139 1.01136 0.98569 1.23046 1.03784 0.93061 1.01150 1.22997 0.94551 1.00873 1.03636 0.90207 0.93507 0.96303 0.95372 0.99701 0.92371 0.91677 0.95248 0.91594 0.92058 0.88535 0.87925 0.87025 0.88970 0.87591 0.88034 0.89647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.57 9.14 127.69 1.17 2.73 16 2 N -0.55 -23.54 4.75 -927.03 -4.41 -27.95 16 3 C 0.17 8.45 3.79 85.56 0.32 8.77 16 4 C -0.52 -30.80 9.01 25.60 0.23 -30.57 16 5 H 0.04 2.50 7.37 -2.91 -0.02 2.48 16 6 C 0.01 0.44 5.47 84.65 0.46 0.90 16 7 N -0.95 -60.10 13.96 21.45 0.30 -59.80 16 8 Si 0.95 44.69 27.47 68.60 1.88 46.58 16 9 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 11 H -0.25 -11.02 6.54 99.48 0.65 -10.37 16 12 C 0.06 1.94 4.92 86.31 0.42 2.37 16 13 C -0.07 -1.97 5.42 30.60 0.17 -1.81 16 14 C -0.15 -3.24 5.38 -10.79 -0.06 -3.30 16 15 H 0.10 2.29 8.07 -2.39 -0.02 2.27 16 16 C -0.16 -3.03 9.90 30.60 0.30 -2.73 16 17 C -0.12 -2.27 5.59 -10.79 -0.06 -2.33 16 18 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 19 C -0.13 -2.15 5.87 -10.79 -0.06 -2.21 16 20 C -0.17 -2.65 10.25 30.60 0.31 -2.34 16 21 C -0.18 -3.12 10.18 30.60 0.31 -2.81 16 22 H 0.08 2.58 6.47 -2.39 -0.02 2.57 16 23 H 0.05 2.10 6.76 -2.38 -0.02 2.09 16 24 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.03 1.39 6.99 -2.38 -0.02 1.37 16 26 H -0.01 -0.71 7.55 -2.39 -0.02 -0.73 16 27 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 28 H 0.06 2.17 7.93 -2.39 -0.02 2.15 16 29 H 0.03 0.95 8.12 -2.39 -0.02 0.93 16 30 H 0.07 1.72 6.29 -2.39 -0.02 1.70 16 31 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.10 1.72 8.03 -2.39 -0.02 1.71 16 33 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -65.57 307.01 2.24 -63.34 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 0.94 Total: 11.16 kcal Atomic # 6 Polarization: -36.84 SS G_CDS: 3.52 Total: -33.32 kcal Atomic # 7 Polarization: -83.65 SS G_CDS: -4.11 Total: -87.76 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.58 kcal Total: -65.57 2.24 -63.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714819790.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.354 kcal (2) G-P(sol) polarization free energy of solvation -65.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds