Wall clock time and date at job start Mon Mar 30 2020 03:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46897 * 111.00196 * 2 1 4 4 C 1.50699 * 109.46827 * 293.95288 * 3 2 1 5 5 H 1.08002 * 120.00210 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99881 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00148 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00003 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47165 * 89.99950 * 8 6 4 10 10 H 1.48501 * 109.46958 * 210.00056 * 8 6 4 11 11 H 1.48501 * 109.47115 * 329.99617 * 8 6 4 12 12 C 1.46908 * 110.99962 * 123.95545 * 2 1 3 13 13 C 1.52999 * 109.47129 * 66.04243 * 12 2 1 14 14 C 1.53006 * 109.46848 * 180.02562 * 13 12 2 15 15 H 1.09002 * 115.56020 * 330.69782 * 14 13 12 16 16 C 1.53000 * 117.49776 * 116.39199 * 14 13 12 17 17 C 1.52997 * 117.49537 * 185.01653 * 14 13 12 18 18 H 1.08999 * 117.52022 * 359.97438 * 17 14 13 19 19 C 1.52997 * 117.49797 * 145.02216 * 17 14 13 20 20 C 1.53001 * 117.49809 * 248.75745 * 19 17 14 21 21 C 1.52999 * 117.49845 * 180.09728 * 19 17 14 22 22 H 1.09003 * 109.46950 * 296.04940 * 1 2 3 23 23 H 1.08996 * 109.47111 * 56.04555 * 1 2 3 24 24 H 1.09004 * 109.47462 * 176.04868 * 1 2 3 25 25 H 1.08997 * 109.47436 * 53.95562 * 3 2 1 26 26 H 1.08997 * 109.46937 * 173.95327 * 3 2 1 27 27 H 0.96993 * 120.00194 * 180.02562 * 7 6 4 28 28 H 1.08997 * 109.46404 * 306.04211 * 12 2 1 29 29 H 1.08994 * 109.47232 * 186.04831 * 12 2 1 30 30 H 1.09002 * 109.47016 * 60.00108 * 13 12 2 31 31 H 1.08999 * 109.47191 * 300.00080 * 13 12 2 32 32 H 1.08990 * 117.49990 * 359.97438 * 16 14 13 33 33 H 1.09004 * 117.49237 * 214.97568 * 16 14 13 34 34 H 1.08998 * 115.55118 * 34.42516 * 19 17 14 35 35 H 1.09000 * 117.49696 * 359.97438 * 20 19 17 36 36 H 1.08998 * 117.50475 * 145.02111 * 20 19 17 37 37 H 1.09005 * 117.49679 * 214.97511 * 21 19 17 38 38 H 1.08995 * 117.50299 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0470 -1.2985 5 1 1.0739 1.5114 -2.0485 6 6 2.0277 3.3490 -1.5290 7 7 2.7129 4.0015 -0.6155 8 14 1.5827 4.1868 -3.1382 9 1 0.2709 4.8678 -2.9955 10 1 2.6254 5.1873 -3.4802 11 1 1.4983 3.1711 -4.2182 12 6 1.9954 -0.7661 1.1376 13 6 1.6314 -2.2427 0.9704 14 6 2.1791 -3.0403 2.1556 15 1 3.0832 -2.6399 2.6144 16 6 1.1660 -3.7278 3.0732 17 6 2.0210 -4.5616 2.1167 18 1 1.5264 -4.9945 1.2472 19 6 3.1437 -5.4044 2.7250 20 6 4.0008 -6.2357 1.7683 21 6 2.9866 -6.9257 2.6841 22 1 -0.3633 0.4513 0.9233 23 1 -0.3633 0.5740 -0.8524 24 1 -0.3634 -1.0252 -0.0708 25 1 1.5612 1.9273 0.8309 26 1 3.0797 1.3443 0.1083 27 1 2.9875 4.9175 -0.7775 28 1 1.5611 -0.3872 2.0628 29 1 3.0796 -0.6612 1.1757 30 1 2.0657 -2.6214 0.0452 31 1 0.5471 -2.3475 0.9324 32 1 0.1093 -3.6114 2.8328 33 1 1.4036 -3.7796 4.1357 34 1 3.6366 -4.9725 3.5960 35 1 3.7644 -6.1825 0.7055 36 1 5.0573 -6.3512 2.0101 37 1 3.3765 -7.4948 3.5280 38 1 2.0833 -7.3263 2.2242 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714819792.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:12 Heat of formation + Delta-G solvation = 37.486937 kcal Electronic energy + Delta-G solvation = -14801.400506 eV Core-core repulsion = 12451.912907 eV Total energy + Delta-G solvation = -2349.487600 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.79667 -36.81923 -35.40664 -32.59172 -30.01661 -26.99654 -25.41304 -23.71178 -22.69915 -22.35301 -20.44736 -20.17899 -19.73484 -16.31642 -15.81670 -15.39955 -14.88694 -14.48622 -14.24941 -13.44824 -13.30864 -13.15412 -12.61975 -11.92704 -11.78966 -11.64054 -11.45440 -11.21648 -11.18263 -11.08316 -10.82685 -10.74378 -10.60439 -10.49640 -10.30829 -9.85477 -9.59774 -9.35815 -9.07850 -8.40809 -7.17321 -5.99518 -4.00661 3.33741 3.39666 3.42661 3.44547 4.11855 4.32735 4.46327 4.73848 4.78426 4.96862 5.09862 5.16788 5.23226 5.31698 5.36689 5.47870 5.54044 5.72996 5.75499 5.82183 5.96059 5.97724 6.04120 6.13170 6.16084 6.22509 6.33009 6.40205 6.60600 6.64518 6.81119 7.34993 7.39869 7.84354 8.14113 8.26128 8.60856 9.07248 9.63333 11.11499 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.055858 B = 0.004148 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.147337 B = 6749.100002 C = 6844.488517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.543 5.543 3 C 0.192 3.808 4 C -0.506 4.506 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.059 3.941 13 C -0.084 4.084 14 C -0.135 4.135 15 H 0.103 0.897 16 C -0.175 4.175 17 C -0.124 4.124 18 H 0.102 0.898 19 C -0.119 4.119 20 C -0.178 4.178 21 C -0.181 4.181 22 H 0.009 0.991 23 H 0.072 0.928 24 H 0.045 0.955 25 H -0.010 1.010 26 H 0.029 0.971 27 H 0.261 0.739 28 H 0.021 0.979 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.976 -17.420 6.772 18.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.267 5.267 3 C 0.067 3.933 4 C -0.545 4.545 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.198 1.198 12 C -0.070 4.070 13 C -0.122 4.122 14 C -0.154 4.154 15 H 0.121 0.879 16 C -0.212 4.212 17 C -0.142 4.142 18 H 0.120 0.880 19 C -0.137 4.137 20 C -0.215 4.215 21 C -0.218 4.218 22 H 0.027 0.973 23 H 0.091 0.909 24 H 0.064 0.936 25 H 0.008 0.992 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.039 0.961 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.120 0.880 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.727 -17.460 6.367 18.599 hybrid contribution -0.422 0.986 0.019 1.073 sum -1.149 -16.474 6.387 17.706 Atomic orbital electron populations 1.22234 0.89207 0.99396 1.00358 1.62099 1.06793 1.17751 1.40075 1.19728 0.95356 0.81721 0.96527 1.21187 1.34626 0.96918 1.01749 0.91870 1.25002 0.95339 0.97374 0.97013 1.69962 1.38478 1.11398 1.34126 0.86497 0.77956 0.79214 0.83755 1.20776 1.21264 1.19753 1.22011 0.99862 0.92660 0.92439 1.21201 1.00108 0.94672 0.96196 1.22437 1.00506 0.92719 0.99707 0.87880 1.23095 0.96951 1.04440 0.96697 1.21812 0.99052 0.92551 1.00834 0.87992 1.21722 0.99253 0.91967 1.00801 1.22947 0.96695 1.04419 0.97395 1.22943 1.01453 0.94866 1.02552 0.97261 0.90907 0.93618 0.99247 0.95282 0.92965 0.96114 0.91573 0.91028 0.92145 0.88893 0.89161 0.88002 0.88640 0.88905 0.89047 0.88872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.14 60.06 0.55 1.29 16 2 N -0.54 -12.17 4.75 -244.38 -1.16 -13.33 16 3 C 0.19 5.17 4.72 -4.98 -0.02 5.15 16 4 C -0.51 -14.56 8.46 -34.44 -0.29 -14.85 16 5 H 0.06 1.79 7.12 -52.49 -0.37 1.42 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 8 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 12 C 0.06 1.10 4.92 -3.82 -0.02 1.08 16 13 C -0.08 -1.26 5.42 -26.73 -0.14 -1.41 16 14 C -0.14 -1.71 5.46 -90.62 -0.49 -2.20 16 15 H 0.10 1.32 8.07 -51.93 -0.42 0.90 16 16 C -0.17 -1.94 9.90 -26.73 -0.26 -2.21 16 17 C -0.12 -1.38 5.57 -90.62 -0.50 -1.88 16 18 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 19 C -0.12 -1.19 5.84 -90.62 -0.53 -1.72 16 20 C -0.18 -1.64 10.25 -26.69 -0.27 -1.91 16 21 C -0.18 -1.57 10.25 -26.69 -0.27 -1.84 16 22 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 23 H 0.07 1.56 6.76 -51.93 -0.35 1.21 16 24 H 0.05 0.78 6.47 -51.93 -0.34 0.45 16 25 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 26 H 0.03 0.83 7.93 -51.93 -0.41 0.42 16 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.02 0.39 8.12 -51.93 -0.42 -0.03 16 29 H 0.07 1.25 7.93 -51.93 -0.41 0.83 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.06 0.89 6.28 -51.93 -0.33 0.56 16 32 H 0.09 1.01 8.03 -51.93 -0.42 0.60 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 310.72 15.07 4.68 4.68 Total: -1.00 -29.94 310.72 -9.96 -39.90 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -6.83 Total: -2.62 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -2.37 Total: -19.06 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: -0.43 Total: -39.81 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.94 -9.96 -39.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714819792.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.385 kcal (2) G-P(sol) polarization free energy of solvation -29.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds