Wall clock time and date at job start Mon Mar 30 2020 03:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46903 * 110.99932 * 2 1 4 4 C 1.50694 * 109.47066 * 293.95260 * 3 2 1 5 5 H 1.08000 * 120.00563 * 359.97438 * 4 3 2 6 6 C 1.37885 * 119.99902 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.46907 * 111.00071 * 123.95245 * 2 1 3 13 13 C 1.53000 * 109.46762 * 66.04837 * 12 2 1 14 14 C 1.53001 * 109.46897 * 180.02562 * 13 12 2 15 15 H 1.08999 * 115.54881 * 29.27968 * 14 13 12 16 16 C 1.53003 * 117.50119 * 243.60746 * 14 13 12 17 17 C 1.53003 * 117.49857 * 174.98461 * 14 13 12 18 18 H 1.08997 * 117.49918 * 214.97872 * 17 14 13 19 19 C 1.52998 * 117.49752 * 359.97438 * 17 14 13 20 20 C 1.52993 * 117.49956 * 248.61915 * 19 17 14 21 21 C 1.52992 * 60.00434 * 252.51303 * 20 19 17 22 22 H 1.09004 * 109.46699 * 60.00180 * 1 2 3 23 23 H 1.09000 * 109.46908 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47502 * 300.00034 * 1 2 3 25 25 H 1.09007 * 109.47052 * 173.94945 * 3 2 1 26 26 H 1.09003 * 109.46808 * 53.95638 * 3 2 1 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.46818 * 186.04569 * 12 2 1 29 29 H 1.08997 * 109.46956 * 306.04778 * 12 2 1 30 30 H 1.09004 * 109.47267 * 299.99966 * 13 12 2 31 31 H 1.08997 * 109.47434 * 60.00233 * 13 12 2 32 32 H 1.09001 * 117.49523 * 0.02562 * 16 14 13 33 33 H 1.08993 * 117.49610 * 145.01791 * 16 14 13 34 34 H 1.08997 * 115.54995 * 34.33379 * 19 17 14 35 35 H 1.09001 * 117.50528 * 0.02562 * 20 19 17 36 36 H 1.09006 * 117.49655 * 145.02226 * 20 19 17 37 37 H 1.09002 * 117.50131 * 252.51690 * 21 20 19 38 38 H 1.09005 * 117.50170 * 107.48508 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0746 1.5113 -2.0488 6 6 2.0277 3.3492 -1.5289 7 7 2.7128 4.0016 -0.6153 8 14 1.5839 4.1864 -3.1387 9 1 2.6608 3.9494 -4.1333 10 1 0.3059 3.6295 -3.6505 11 1 1.4321 5.6462 -2.9119 12 6 1.9954 -0.7660 1.1376 13 6 1.6315 -2.2426 0.9703 14 6 2.1792 -3.0403 2.1555 15 1 2.2621 -2.4914 3.0935 16 6 3.2410 -4.1021 1.8621 17 6 1.8186 -4.5251 2.2348 18 1 1.6641 -4.9533 3.2251 19 6 0.9374 -5.0984 1.1232 20 6 -0.4847 -5.5214 1.4964 21 6 0.5769 -6.5832 1.2024 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 3.0797 1.3444 0.1083 26 1 1.5610 1.9273 0.8310 27 1 2.9880 4.9175 -0.7776 28 1 3.0797 -0.6611 1.1756 29 1 1.5611 -0.3872 2.0628 30 1 0.5471 -2.3475 0.9323 31 1 2.0658 -2.6214 0.0452 32 1 3.5497 -4.2321 0.8248 33 1 4.0222 -4.2519 2.6073 34 1 1.0920 -4.6702 0.1328 35 1 -0.7928 -5.3910 2.5338 36 1 -1.2662 -5.3714 0.7515 37 1 0.4939 -7.1317 0.2642 38 1 0.9675 -7.1516 2.0466 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714819795.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:16 Heat of formation + Delta-G solvation = 38.749284 kcal Electronic energy + Delta-G solvation = -15012.560158 eV Core-core repulsion = 12663.127298 eV Total energy + Delta-G solvation = -2349.432860 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.89236 -36.71183 -35.33732 -32.59203 -29.98449 -26.97738 -25.36523 -23.81502 -22.66289 -22.29829 -21.05724 -20.01036 -19.02062 -16.32794 -15.84826 -15.48329 -14.72314 -14.61303 -14.10353 -13.78865 -13.23127 -12.88103 -12.75451 -11.94613 -11.74907 -11.61062 -11.39181 -11.28312 -11.09566 -10.91178 -10.81869 -10.76451 -10.52835 -10.47460 -10.32645 -9.82286 -9.58239 -9.32967 -9.08277 -8.39866 -7.16564 -5.99249 -4.00310 3.34391 3.39918 3.43742 3.46872 4.15406 4.43071 4.45703 4.70432 4.84867 4.92801 5.21004 5.23648 5.28969 5.31597 5.37212 5.52444 5.55079 5.73385 5.76883 5.85902 5.99204 6.01087 6.10396 6.15547 6.16723 6.27787 6.36815 6.38706 6.61388 6.66964 6.82367 7.35492 7.40403 7.84806 8.14628 8.26831 8.61524 9.07621 9.63694 11.11796 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.048425 B = 0.004679 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.076759 B = 5983.058275 C = 6274.592529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.543 5.543 3 C 0.192 3.808 4 C -0.506 4.506 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.288 1.288 12 C 0.058 3.942 13 C -0.082 4.082 14 C -0.138 4.138 15 H 0.101 0.899 16 C -0.173 4.173 17 C -0.125 4.125 18 H 0.098 0.902 19 C -0.117 4.117 20 C -0.178 4.178 21 C -0.182 4.182 22 H 0.071 0.929 23 H 0.046 0.954 24 H 0.010 0.990 25 H 0.029 0.971 26 H -0.010 1.010 27 H 0.261 0.739 28 H 0.066 0.934 29 H 0.019 0.981 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.101 -17.138 5.473 18.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.267 5.267 3 C 0.067 3.933 4 C -0.545 4.545 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.213 1.213 12 C -0.071 4.071 13 C -0.119 4.119 14 C -0.156 4.156 15 H 0.120 0.880 16 C -0.210 4.210 17 C -0.143 4.143 18 H 0.116 0.884 19 C -0.135 4.135 20 C -0.215 4.215 21 C -0.219 4.219 22 H 0.089 0.911 23 H 0.065 0.935 24 H 0.028 0.972 25 H 0.047 0.953 26 H 0.008 0.992 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.037 0.963 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.114 0.886 33 H 0.109 0.891 34 H 0.126 0.874 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.859 -17.175 5.071 18.135 hybrid contribution -0.394 0.986 0.017 1.062 sum -3.253 -16.189 5.088 17.279 Atomic orbital electron populations 1.22230 0.89195 0.99127 1.00610 1.62099 1.06791 1.17727 1.40067 1.19734 0.95341 0.81732 0.96521 1.21186 1.34659 0.96901 1.01705 0.91890 1.25001 0.95368 0.97357 0.96981 1.69967 1.38527 1.11460 1.34029 0.86498 0.78849 0.78405 0.83648 1.20631 1.19873 1.21343 1.22026 0.99924 0.92751 0.92384 1.21173 1.00439 0.94460 0.95854 1.22424 1.02437 0.90053 1.00710 0.88049 1.23088 0.91536 1.03841 1.02491 1.21787 0.96862 0.97684 0.98014 0.88370 1.21714 0.96257 0.96374 0.99171 1.22910 0.92322 1.03853 1.02416 1.22926 1.04070 0.91898 1.02996 0.91071 0.93529 0.97194 0.95308 0.99249 0.92975 0.91549 0.96265 0.91711 0.91363 0.88638 0.89141 0.87437 0.88961 0.88846 0.88988 0.89057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 9.16 60.06 0.55 1.30 16 2 N -0.54 -12.15 4.75 -244.36 -1.16 -13.31 16 3 C 0.19 5.17 4.72 -4.98 -0.02 5.15 16 4 C -0.51 -14.56 8.51 -34.44 -0.29 -14.86 16 5 H 0.06 1.79 7.10 -52.49 -0.37 1.42 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 8 Si 0.90 21.95 29.54 -169.99 -5.02 16.92 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 C 0.06 1.08 4.92 -3.82 -0.02 1.06 16 13 C -0.08 -1.22 4.23 -26.73 -0.11 -1.34 16 14 C -0.14 -1.74 5.74 -90.62 -0.52 -2.26 16 15 H 0.10 1.26 8.07 -51.93 -0.42 0.84 16 16 C -0.17 -1.95 9.90 -26.73 -0.26 -2.21 16 17 C -0.13 -1.38 5.85 -90.62 -0.53 -1.91 16 18 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 19 C -0.12 -1.26 5.10 -90.62 -0.46 -1.72 16 20 C -0.18 -1.73 10.25 -26.74 -0.27 -2.00 16 21 C -0.18 -1.67 10.25 -26.73 -0.27 -1.94 16 22 H 0.07 1.53 6.86 -51.93 -0.36 1.17 16 23 H 0.05 0.80 6.30 -51.93 -0.33 0.47 16 24 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 25 H 0.03 0.83 7.93 -51.92 -0.41 0.41 16 26 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.07 1.26 7.93 -51.93 -0.41 0.85 16 29 H 0.02 0.36 8.12 -51.93 -0.42 -0.06 16 30 H 0.06 0.97 6.36 -51.93 -0.33 0.64 16 31 H 0.07 1.06 7.62 -51.93 -0.40 0.67 16 32 H 0.10 1.10 8.03 -51.93 -0.42 0.69 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.11 1.25 7.35 -51.93 -0.38 0.87 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 308.08 15.07 4.64 4.64 Total: -1.00 -29.92 308.08 -9.88 -39.81 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -6.76 Total: -2.29 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: -2.32 Total: -19.27 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: -0.43 Total: -39.81 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.92 -9.88 -39.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714819795.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.558 kcal (2) G-P(sol) polarization free energy of solvation -29.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds