Wall clock time and date at job start Mon Mar 30 2020 02:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47272 * 2 1 4 4 C 1.36933 * 119.99937 * 85.03203 * 3 2 1 5 5 H 1.07998 * 120.00126 * 209.87244 * 4 3 2 6 6 C 1.38815 * 120.00117 * 29.87036 * 4 3 2 7 7 N 1.31623 * 119.99967 * 40.66243 * 6 4 3 8 8 Si 1.86804 * 120.00032 * 220.38957 * 6 4 3 9 9 H 1.48500 * 109.47068 * 180.27366 * 8 6 4 10 10 H 1.48494 * 109.47159 * 300.27393 * 8 6 4 11 11 H 1.48498 * 109.46834 * 60.27523 * 8 6 4 12 12 C 1.46495 * 119.99917 * 265.02738 * 3 2 1 13 13 C 1.52999 * 109.47321 * 270.00289 * 12 3 2 14 14 C 1.53004 * 109.47019 * 180.02562 * 13 12 3 15 15 H 1.09000 * 115.55290 * 330.58425 * 14 13 12 16 16 C 1.53001 * 117.49826 * 116.25119 * 14 13 12 17 17 C 1.53001 * 117.49955 * 184.91052 * 14 13 12 18 18 H 1.08995 * 117.49748 * 144.99420 * 17 14 13 19 19 C 1.52998 * 117.49658 * 0.02562 * 17 14 13 20 20 C 1.52996 * 117.49913 * 128.62049 * 19 17 14 21 21 C 1.52999 * 60.00175 * 252.50795 * 20 19 17 22 22 H 1.08997 * 109.47411 * 59.99261 * 1 2 3 23 23 H 1.08998 * 109.47406 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46816 * 299.99970 * 1 2 3 25 25 H 1.09004 * 109.46816 * 240.00030 * 2 1 3 26 26 H 1.09005 * 109.47148 * 120.00530 * 2 1 3 27 27 H 0.96999 * 119.99822 * 5.57075 * 7 6 4 28 28 H 1.09003 * 109.47255 * 30.00714 * 12 3 2 29 29 H 1.09006 * 109.46804 * 150.00080 * 12 3 2 30 30 H 1.09003 * 109.46770 * 299.99847 * 13 12 3 31 31 H 1.08993 * 109.47044 * 60.00261 * 13 12 3 32 32 H 1.09003 * 117.49965 * 214.97971 * 16 14 13 33 33 H 1.08998 * 117.49823 * 0.02562 * 16 14 13 34 34 H 1.09004 * 115.55126 * 274.33139 * 19 17 14 35 35 H 1.09000 * 117.50118 * 359.97438 * 20 19 17 36 36 H 1.09002 * 117.50043 * 145.02343 * 20 19 17 37 37 H 1.08996 * 117.49980 * 252.51049 * 21 20 19 38 38 H 1.08998 * 117.50035 * 107.48682 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1498 2.0609 1.1814 5 1 2.0313 3.1342 1.2030 6 6 2.4352 1.3705 2.3514 7 7 3.3043 0.3821 2.3369 8 14 1.5917 1.8493 3.9479 9 1 2.0706 0.9692 5.0440 10 1 1.9116 3.2626 4.2723 11 1 0.1224 1.6964 3.7965 12 6 2.3662 2.0351 -1.2639 13 6 3.8422 1.7837 -1.5790 14 6 4.2055 2.4672 -2.8987 15 1 3.3929 2.5606 -3.6192 16 6 5.2389 3.5944 -2.8494 17 6 5.6145 2.2370 -3.4490 18 1 5.7288 2.1789 -4.5314 19 6 6.5520 1.3405 -2.6377 20 6 7.2468 0.1942 -3.3752 21 6 6.1119 -0.1043 -2.3935 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.8048 0.1882 1.5289 28 1 1.7492 1.6285 -2.0653 29 1 2.1904 3.1075 -1.1786 30 1 4.4591 2.1904 -0.7776 31 1 4.0179 0.7114 -1.6643 32 1 5.1063 4.4293 -3.5376 33 1 5.6601 3.8488 -1.8768 34 1 7.1078 1.8384 -1.8432 35 1 7.0358 0.0784 -4.4383 36 1 8.2601 -0.0623 -3.0660 37 1 6.3786 -0.5571 -1.4385 38 1 5.1545 -0.4162 -2.8108 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714825618.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:44 Heat of formation + Delta-G solvation = 54.177856 kcal Electronic energy + Delta-G solvation = -15722.270649 eV Core-core repulsion = 13373.506822 eV Total energy + Delta-G solvation = -2348.763827 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.72034 -36.20421 -34.97963 -31.65029 -30.57982 -27.80863 -24.07022 -23.45993 -22.82483 -22.00633 -20.86746 -19.88207 -18.82186 -17.05588 -15.46235 -15.20944 -14.46127 -14.32511 -13.75805 -13.55208 -13.05843 -12.70042 -12.56178 -12.09172 -11.49241 -11.36490 -11.14665 -11.07948 -10.87761 -10.64286 -10.58958 -10.37605 -10.23306 -10.17049 -9.97707 -9.87000 -9.45419 -9.34301 -9.06199 -8.14766 -6.77710 -6.07922 -3.11736 3.53631 3.58972 3.75954 3.83878 4.18790 4.66424 4.76411 5.01542 5.14079 5.19326 5.24643 5.34939 5.54913 5.60860 5.66331 5.77009 5.85297 6.05855 6.12993 6.16157 6.21087 6.27259 6.34500 6.38260 6.44780 6.46497 6.58248 6.60986 6.71121 6.78236 7.02018 7.18325 7.20756 7.41105 8.20418 8.63187 9.20977 9.93330 10.41397 11.14746 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.028896 B = 0.007229 C = 0.007023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.776017 B = 3872.247360 C = 3985.686076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.136 3.864 3 N -0.593 5.593 4 C -0.364 4.364 5 H 0.051 0.949 6 C -0.011 4.011 7 N -0.884 5.884 8 Si 1.040 2.960 9 H -0.287 1.287 10 H -0.293 1.293 11 H -0.294 1.294 12 C 0.152 3.848 13 C -0.105 4.105 14 C -0.134 4.134 15 H 0.095 0.905 16 C -0.175 4.175 17 C -0.130 4.130 18 H 0.097 0.903 19 C -0.116 4.116 20 C -0.185 4.185 21 C -0.167 4.167 22 H 0.035 0.965 23 H 0.034 0.966 24 H 0.053 0.947 25 H 0.026 0.974 26 H 0.068 0.932 27 H 0.269 0.731 28 H 0.030 0.970 29 H 0.041 0.959 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.540 0.849 -10.521 11.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.010 3.990 3 N -0.315 5.315 4 C -0.492 4.492 5 H 0.068 0.932 6 C -0.216 4.216 7 N -0.521 5.521 8 Si 0.870 3.130 9 H -0.213 1.213 10 H -0.220 1.220 11 H -0.221 1.221 12 C 0.025 3.975 13 C -0.145 4.145 14 C -0.153 4.153 15 H 0.114 0.886 16 C -0.212 4.212 17 C -0.148 4.148 18 H 0.115 0.885 19 C -0.134 4.134 20 C -0.222 4.222 21 C -0.204 4.204 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.073 0.927 25 H 0.044 0.956 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.119 0.881 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.369 0.450 -8.898 9.525 hybrid contribution 0.208 0.558 -1.649 1.753 sum 3.577 1.008 -10.547 11.182 Atomic orbital electron populations 1.22202 0.99988 0.98721 1.00954 1.20811 0.91588 0.86796 0.99814 1.44007 1.73644 1.11770 1.02029 1.19680 1.50117 0.93062 0.86369 0.93165 1.25584 0.96725 0.98588 1.00704 1.70794 1.17395 1.34165 1.29787 0.83892 0.76789 0.75526 0.76763 1.21323 1.21992 1.22115 1.20879 0.91745 0.96585 0.88263 1.21880 1.00249 0.99606 0.92776 1.22536 0.91197 1.01313 1.00223 0.88639 1.23083 1.04458 0.91369 1.02257 1.21782 0.97352 0.98067 0.97598 0.88496 1.21611 1.00956 0.89782 1.01061 1.22974 0.97348 1.03977 0.97905 1.22939 0.98641 0.98351 1.00507 0.94590 0.94723 0.92743 0.95570 0.91388 0.92075 0.95139 0.94081 0.91967 0.92076 0.89495 0.88856 0.88074 0.89258 0.89258 0.88794 0.88651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 10.21 37.16 0.38 -2.96 16 2 C 0.14 3.21 5.90 -4.04 -0.02 3.18 16 3 N -0.59 -14.82 2.36 -173.23 -0.41 -15.23 16 4 C -0.36 -10.18 9.25 -15.06 -0.14 -10.32 16 5 H 0.05 1.46 8.06 -52.49 -0.42 1.03 16 6 C -0.01 -0.31 4.52 -17.43 -0.08 -0.39 16 7 N -0.88 -26.12 12.22 55.49 0.68 -25.44 16 8 Si 1.04 25.34 30.06 -169.99 -5.11 20.23 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 C 0.15 3.24 5.60 -4.04 -0.02 3.21 16 13 C -0.11 -2.03 4.77 -26.73 -0.13 -2.15 16 14 C -0.13 -2.09 5.72 -90.62 -0.52 -2.61 16 15 H 0.10 1.40 8.08 -51.93 -0.42 0.98 16 16 C -0.17 -2.50 9.90 -26.69 -0.26 -2.76 16 17 C -0.13 -1.81 5.87 -90.58 -0.53 -2.34 16 18 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 19 C -0.12 -1.65 5.26 -90.62 -0.48 -2.12 16 20 C -0.19 -2.27 10.25 -26.73 -0.27 -2.55 16 21 C -0.17 -2.42 8.44 -26.73 -0.23 -2.65 16 22 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.03 0.56 8.03 -51.93 -0.42 0.15 16 26 H 0.07 1.80 5.70 -51.93 -0.30 1.50 16 27 H 0.27 8.03 8.10 -40.82 -0.33 7.70 16 28 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 29 H 0.04 0.90 8.04 -51.93 -0.42 0.48 16 30 H 0.06 1.38 7.87 -51.93 -0.41 0.97 16 31 H 0.06 1.21 5.63 -51.93 -0.29 0.91 16 32 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.09 1.42 8.03 -51.93 -0.42 1.01 16 34 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.10 1.42 7.31 -51.93 -0.38 1.04 16 LS Contribution 307.86 15.07 4.64 4.64 Total: -1.00 -28.75 307.86 -9.32 -38.08 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -6.82 Total: 2.18 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: -2.30 Total: -24.45 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.27 Total: -40.67 kcal Atomic # 14 Polarization: 25.34 SS G_CDS: -5.11 Total: 20.23 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.75 -9.32 -38.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714825618.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.255 kcal (2) G-P(sol) polarization free energy of solvation -28.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds