Wall clock time and date at job start Mon Mar 30 2020 02:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99730 * 2 1 4 4 C 1.52999 * 109.46921 * 125.00720 * 3 2 1 5 5 H 1.09010 * 109.47171 * 305.06822 * 4 3 2 6 6 C 1.52997 * 109.47303 * 185.07272 * 4 3 2 7 7 N 1.46500 * 109.47389 * 65.06556 * 4 3 2 8 8 C 1.36936 * 119.99597 * 55.41931 * 7 4 3 9 9 H 1.07999 * 119.99891 * 233.60030 * 8 7 4 10 10 C 1.38814 * 120.00202 * 53.60725 * 8 7 4 11 11 N 1.31617 * 120.00187 * 38.57524 * 10 8 7 12 12 Si 1.86802 * 119.99862 * 218.57964 * 10 8 7 13 13 H 1.48503 * 109.47033 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47101 * 119.99663 * 12 10 8 15 15 H 1.48497 * 109.47134 * 239.99821 * 12 10 8 16 16 C 1.46501 * 120.00409 * 235.41520 * 7 4 3 17 17 C 1.54266 * 110.48840 * 240.00219 * 16 7 4 18 18 C 1.53872 * 106.64047 * 217.73657 * 17 16 7 19 19 C 1.54272 * 106.59816 * 359.97320 * 18 17 16 20 20 C 1.54893 * 104.19514 * 23.61170 * 19 18 17 21 21 H 1.07999 * 119.99906 * 180.02562 * 1 2 3 22 22 H 1.08002 * 120.00093 * 359.97438 * 1 2 3 23 23 H 1.08002 * 120.00093 * 180.02562 * 2 1 3 24 24 H 1.08998 * 109.47404 * 5.00520 * 3 2 1 25 25 H 1.08999 * 109.47128 * 245.00124 * 3 2 1 26 26 H 1.09006 * 109.46874 * 308.78490 * 6 4 3 27 27 H 1.08999 * 109.47212 * 68.78701 * 6 4 3 28 28 H 1.09000 * 109.47059 * 188.78951 * 6 4 3 29 29 H 0.96994 * 120.00014 * 180.02562 * 11 10 8 30 30 H 1.09000 * 110.53325 * 2.61706 * 16 7 4 31 31 H 1.08996 * 110.03208 * 98.42451 * 17 16 7 32 32 H 1.09000 * 110.03069 * 337.04468 * 17 16 7 33 33 H 1.09001 * 110.03532 * 119.25656 * 18 17 16 34 34 H 1.08996 * 110.03143 * 240.69175 * 18 17 16 35 35 H 1.09003 * 110.48422 * 142.28850 * 19 18 17 36 36 H 1.08995 * 110.48559 * 264.79823 * 19 18 17 37 37 H 1.09010 * 110.75415 * 80.36928 * 20 19 18 38 38 H 1.08998 * 110.75434 * 203.55380 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1815 5 1 2.4886 1.1455 2.1059 6 6 3.7079 2.7051 1.2563 7 7 4.0557 0.2979 0.9992 8 6 4.8077 0.2721 -0.1449 9 1 4.8637 -0.6313 -0.7340 10 6 5.4983 1.4070 -0.5474 11 7 6.0816 2.1748 0.3485 12 14 5.5996 1.8447 -2.3606 13 1 4.8665 0.8279 -3.1569 14 1 4.9906 3.1808 -2.5821 15 1 7.0225 1.8728 -2.7843 16 6 4.2717 -0.7094 2.0407 17 6 5.7207 -0.6410 2.5658 18 6 6.1647 -2.0915 2.8239 19 6 4.9699 -2.9918 2.4475 20 6 4.1495 -2.1368 1.4499 21 1 -0.5400 -0.9353 0.0004 22 1 -0.5400 0.9353 0.0004 23 1 1.8501 -0.9353 -0.0004 24 1 1.3586 2.1316 0.0897 25 1 2.6212 1.4027 -0.9314 26 1 4.1218 2.9604 0.2808 27 1 2.9722 3.4552 1.5465 28 1 4.5090 2.6772 1.9949 29 1 6.5638 2.9680 0.0672 30 1 3.5631 -0.5729 2.8575 31 1 5.7552 -0.0693 3.4931 32 1 6.3670 -0.1800 1.8189 33 1 7.0260 -2.3347 2.2018 34 1 6.4147 -2.2236 3.8766 35 1 5.3179 -3.9072 1.9690 36 1 4.3757 -3.2262 3.3307 37 1 4.5876 -2.1802 0.4526 38 1 3.1092 -2.4612 1.4276 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715786257.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:04 Heat of formation + Delta-G solvation = 19.632576 kcal Electronic energy + Delta-G solvation = -16560.366227 eV Core-core repulsion = 14210.104404 eV Total energy + Delta-G solvation = -2350.261823 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.49195 -37.34235 -34.90627 -33.02089 -31.41690 -29.23441 -28.04871 -26.95901 -25.44285 -21.67735 -21.15247 -20.65913 -20.35998 -17.91489 -17.09012 -16.46745 -16.20554 -15.72201 -15.30240 -14.51659 -14.16543 -14.02920 -13.94819 -13.44801 -13.09913 -13.03445 -12.80617 -12.60987 -12.29647 -12.12288 -11.89548 -11.78753 -11.67349 -11.60358 -11.46485 -11.33740 -11.07680 -10.95775 -9.98752 -9.82678 -8.35571 -7.57882 -5.36811 1.38532 1.49087 1.56437 1.62686 2.54167 3.16195 3.66289 4.09855 4.11676 4.22301 4.34039 4.50299 4.61343 4.73919 4.79833 4.85954 4.93079 5.00381 5.01420 5.06400 5.11395 5.16765 5.28982 5.31498 5.35526 5.41405 5.44562 5.59587 5.70485 5.71027 5.87385 5.94984 5.96170 6.06893 6.15842 6.70959 7.37812 7.99143 8.68144 9.08153 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.018369 B = 0.014155 C = 0.010098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.911894 B = 1977.577159 C = 2772.133424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.129 4.129 3 C -0.092 4.092 4 C 0.185 3.815 5 H 0.048 0.952 6 C -0.133 4.133 7 N -0.578 5.578 8 C -0.272 4.272 9 H 0.033 0.967 10 C 0.024 3.976 11 N -0.860 5.860 12 Si 0.897 3.103 13 H -0.273 1.273 14 H -0.288 1.288 15 H -0.296 1.296 16 C 0.166 3.834 17 C -0.128 4.128 18 C -0.115 4.115 19 C -0.112 4.112 20 C -0.124 4.124 21 H 0.105 0.895 22 H 0.099 0.901 23 H 0.094 0.906 24 H 0.062 0.938 25 H 0.051 0.949 26 H 0.043 0.957 27 H 0.027 0.973 28 H 0.037 0.963 29 H 0.249 0.751 30 H 0.051 0.949 31 H 0.032 0.968 32 H 0.051 0.949 33 H 0.047 0.953 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.047 0.953 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.351 -5.125 3.289 8.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.147 4.147 3 C -0.131 4.131 4 C 0.078 3.922 5 H 0.067 0.933 6 C -0.192 4.192 7 N -0.299 5.299 8 C -0.402 4.402 9 H 0.050 0.950 10 C -0.180 4.180 11 N -0.498 5.498 12 Si 0.725 3.275 13 H -0.197 1.197 14 H -0.214 1.214 15 H -0.224 1.224 16 C 0.060 3.940 17 C -0.168 4.168 18 C -0.153 4.153 19 C -0.150 4.150 20 C -0.164 4.164 21 H 0.123 0.877 22 H 0.118 0.882 23 H 0.112 0.888 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.046 0.954 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.250 -4.958 3.321 8.641 hybrid contribution 0.663 0.765 -1.134 1.520 sum -5.587 -4.193 2.187 7.319 Atomic orbital electron populations 1.23839 0.95130 1.02080 1.03755 1.22864 0.95749 0.98455 0.97609 1.20990 0.97233 0.94868 1.00007 1.20417 0.88252 0.88767 0.94716 0.93333 1.22263 0.98209 0.97001 1.01722 1.43912 1.37876 1.31146 1.16926 1.18239 1.25050 0.97311 0.99614 0.94978 1.25585 0.94235 1.00150 0.97981 1.70557 1.29044 1.15941 1.34253 0.86431 0.76790 0.78048 0.86260 1.19722 1.21425 1.22383 1.21435 0.93425 0.89399 0.89780 1.22442 0.99668 0.95737 0.98910 1.22026 0.97951 0.94885 1.00456 1.22242 0.96397 0.97419 0.98931 1.22717 0.98729 0.96191 0.98729 0.87659 0.88225 0.88754 0.91925 0.93073 0.93824 0.95394 0.94352 0.94168 0.93057 0.94948 0.93063 0.93457 0.91463 0.91508 0.90714 0.93410 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -6.02 14.32 67.78 0.97 -5.05 16 2 C -0.13 -4.50 9.25 25.64 0.24 -4.26 16 3 C -0.09 -3.61 4.99 29.85 0.15 -3.46 16 4 C 0.18 7.91 2.74 44.99 0.12 8.04 16 5 H 0.05 1.96 7.59 -2.38 -0.02 1.94 16 6 C -0.13 -6.05 7.64 71.98 0.55 -5.50 16 7 N -0.58 -26.58 2.11 -648.19 -1.37 -27.95 16 8 C -0.27 -13.99 6.27 84.03 0.53 -13.47 16 9 H 0.03 1.77 6.90 -2.91 -0.02 1.75 16 10 C 0.02 1.27 3.45 84.86 0.29 1.56 16 11 N -0.86 -46.95 10.57 21.65 0.23 -46.72 16 12 Si 0.90 42.59 29.67 68.60 2.04 44.62 16 13 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 14 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 15 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 16 C 0.17 6.83 3.41 46.09 0.16 6.99 16 17 C -0.13 -5.38 6.42 31.32 0.20 -5.18 16 18 C -0.12 -3.87 6.80 31.32 0.21 -3.65 16 19 C -0.11 -3.37 6.83 31.67 0.22 -3.15 16 20 C -0.12 -4.53 6.41 31.91 0.20 -4.32 16 21 H 0.11 2.58 8.06 -2.91 -0.02 2.56 16 22 H 0.10 2.58 7.84 -2.91 -0.02 2.56 16 23 H 0.09 3.57 8.04 -2.91 -0.02 3.55 16 24 H 0.06 2.18 7.79 -2.39 -0.02 2.16 16 25 H 0.05 2.28 7.39 -2.39 -0.02 2.26 16 26 H 0.04 2.17 5.43 -2.38 -0.01 2.16 16 27 H 0.03 1.09 8.14 -2.39 -0.02 1.08 16 28 H 0.04 1.92 7.38 -2.39 -0.02 1.90 16 29 H 0.25 13.30 8.31 -92.71 -0.77 12.53 16 30 H 0.05 2.01 7.62 -2.39 -0.02 1.99 16 31 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.05 2.61 7.13 -2.39 -0.02 2.60 16 33 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.05 1.99 6.48 -2.38 -0.02 1.97 16 38 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -54.40 295.16 5.73 -48.67 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.99 Total: 12.85 kcal Atomic # 6 Polarization: -35.31 SS G_CDS: 3.84 Total: -31.47 kcal Atomic # 7 Polarization: -73.53 SS G_CDS: -1.14 Total: -74.67 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.04 Total: 44.62 kcal Total: -54.40 5.73 -48.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715786257.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.303 kcal (2) G-P(sol) polarization free energy of solvation -54.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds