Wall clock time and date at job start Mon Mar 30 2020 02:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50701 * 119.99338 * 2 1 4 4 C 1.53007 * 109.47079 * 123.53619 * 3 2 1 5 5 H 1.08994 * 109.47403 * 303.47574 * 4 3 2 6 6 C 1.52997 * 109.47384 * 183.46850 * 4 3 2 7 7 N 1.46905 * 109.46634 * 63.47163 * 4 3 2 8 8 C 1.46846 * 110.99591 * 189.82776 * 7 4 3 9 9 C 1.53048 * 109.52050 * 174.15721 * 8 7 4 10 10 C 1.53114 * 109.27623 * 59.18063 * 9 8 7 11 11 C 1.53119 * 109.16003 * 302.34525 * 10 9 8 12 12 H 1.09005 * 109.50435 * 297.70916 * 11 10 9 13 13 C 1.50700 * 109.50209 * 177.64031 * 11 10 9 14 14 H 1.08009 * 119.99447 * 240.07510 * 13 11 10 15 15 C 1.37878 * 120.00534 * 60.07571 * 13 11 10 16 16 N 1.31514 * 119.99730 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 120.00002 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47494 * 59.99991 * 17 15 13 19 19 H 1.48502 * 109.47266 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47226 * 299.99697 * 17 15 13 21 21 C 1.46844 * 111.00458 * 65.61760 * 7 4 3 22 22 H 1.08006 * 119.99361 * 180.02562 * 1 2 3 23 23 H 1.07992 * 120.00122 * 359.97438 * 1 2 3 24 24 H 1.07987 * 120.00576 * 180.02562 * 2 1 3 25 25 H 1.09001 * 109.47753 * 3.53870 * 3 2 1 26 26 H 1.09002 * 109.47496 * 243.53357 * 3 2 1 27 27 H 1.09003 * 109.47306 * 300.00494 * 6 4 3 28 28 H 1.08999 * 109.47187 * 60.00129 * 6 4 3 29 29 H 1.09002 * 109.47291 * 180.02562 * 6 4 3 30 30 H 1.09000 * 109.46401 * 54.14855 * 8 7 4 31 31 H 1.08995 * 109.46604 * 294.17436 * 8 7 4 32 32 H 1.09000 * 109.50343 * 299.23893 * 9 8 7 33 33 H 1.08998 * 109.49811 * 179.12060 * 9 8 7 34 34 H 1.08995 * 109.52228 * 182.43911 * 10 9 8 35 35 H 1.08998 * 109.52413 * 62.24646 * 10 9 8 36 36 H 0.97000 * 119.99980 * 180.02562 * 16 15 13 37 37 H 1.08994 * 109.46313 * 65.82035 * 21 7 4 38 38 H 1.09003 * 109.45807 * 305.85356 * 21 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0086 1.3485 1.2024 5 1 2.4376 1.2009 2.1190 6 6 3.7097 2.7075 1.2514 7 7 4.0128 0.2839 1.0744 8 6 4.7904 0.1425 2.3120 9 6 5.7228 -1.0655 2.1949 10 6 6.6604 -0.8665 1.0009 11 6 5.8247 -0.6733 -0.2675 12 1 5.2347 -1.5705 -0.4548 13 6 6.7388 -0.4190 -1.4383 14 1 6.6599 0.5036 -1.9945 15 6 7.6757 -1.3638 -1.7996 16 7 7.7720 -2.4868 -1.1221 17 14 8.8091 -1.0481 -3.2505 18 1 9.6127 0.1742 -2.9942 19 1 9.7180 -2.2086 -3.4303 20 1 7.9983 -0.8586 -4.4800 21 6 4.8894 0.5232 -0.0791 22 1 -0.5399 -0.9354 0.0004 23 1 -0.5400 0.9352 0.0004 24 1 1.8501 -0.9351 -0.0004 25 1 1.3568 2.1327 0.0634 26 1 2.6417 1.3910 -0.9200 27 1 4.2808 2.8551 0.3348 28 1 2.9646 3.4975 1.3464 29 1 4.3833 2.7382 2.1078 30 1 4.1119 -0.0027 3.1527 31 1 5.3819 1.0435 2.4743 32 1 5.1312 -1.9688 2.0465 33 1 6.3110 -1.1609 3.1076 34 1 7.2971 -1.7438 0.8875 35 1 7.2795 0.0151 1.1669 36 1 8.4314 -3.1514 -1.3760 37 1 5.4804 1.4224 0.0943 38 1 4.2828 0.6546 -0.9751 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715787308.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:09 Heat of formation + Delta-G solvation = -10.262650 kcal Electronic energy + Delta-G solvation = -16086.178087 eV Core-core repulsion = 13734.619910 eV Total energy + Delta-G solvation = -2351.558177 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.35084 -36.94188 -35.01867 -33.61070 -31.67802 -30.50184 -27.57820 -26.89260 -24.96524 -23.08792 -21.55198 -20.52825 -19.78973 -18.39307 -17.12567 -16.36278 -16.15202 -15.51148 -15.18939 -14.84996 -14.62661 -14.47869 -14.08713 -13.62049 -13.60069 -13.12550 -12.84786 -12.74666 -12.68346 -12.51463 -12.03065 -11.90774 -11.72976 -11.64786 -11.55445 -11.30581 -10.81351 -10.64724 -10.36175 -10.04710 -8.96751 -8.07207 -6.21405 1.40767 1.42032 1.49636 1.55474 2.42847 3.15846 3.19508 3.97018 4.15285 4.16739 4.31762 4.35229 4.43851 4.54863 4.60495 4.67982 4.71078 4.81177 4.87609 4.90725 4.99643 5.04661 5.11155 5.17488 5.22063 5.29927 5.38684 5.44281 5.55537 5.64284 5.92502 6.00240 6.03247 6.17471 6.25808 6.49104 6.51152 6.92155 7.46410 8.97214 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.029071 B = 0.007840 C = 0.007246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.911618 B = 3570.555992 C = 3863.009319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.143 4.143 3 C -0.084 4.084 4 C 0.084 3.916 5 H 0.089 0.911 6 C -0.180 4.180 7 N -0.539 5.539 8 C 0.066 3.934 9 C -0.111 4.111 10 C -0.104 4.104 11 C 0.054 3.946 12 H -0.007 1.007 13 C -0.537 4.537 14 H 0.050 0.950 15 C 0.014 3.986 16 N -0.916 5.916 17 Si 0.952 3.048 18 H -0.271 1.271 19 H -0.284 1.284 20 H -0.272 1.272 21 C 0.084 3.916 22 H 0.099 0.901 23 H 0.109 0.891 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.058 0.942 27 H 0.045 0.955 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.028 0.972 32 H 0.048 0.952 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.021 0.979 36 H 0.260 0.740 37 H 0.018 0.982 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.066 7.752 5.677 13.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.161 4.161 3 C -0.121 4.121 4 C -0.024 4.024 5 H 0.107 0.893 6 C -0.239 4.239 7 N -0.263 5.263 8 C -0.062 4.062 9 C -0.148 4.148 10 C -0.142 4.142 11 C 0.035 3.965 12 H 0.011 0.989 13 C -0.576 4.576 14 H 0.068 0.932 15 C -0.185 4.185 16 N -0.555 5.555 17 Si 0.778 3.222 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.197 1.197 21 C -0.044 4.044 22 H 0.117 0.883 23 H 0.127 0.873 24 H 0.108 0.892 25 H 0.107 0.893 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.098 0.902 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.039 0.961 36 H 0.069 0.931 37 H 0.036 0.964 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.219 7.146 5.609 13.673 hybrid contribution 1.441 0.413 -0.799 1.698 sum -8.779 7.559 4.810 12.543 Atomic orbital electron populations 1.23909 0.95251 1.02350 1.02326 1.22851 0.95994 0.98532 0.98738 1.20840 0.97667 0.95862 0.97732 1.21745 0.92764 0.88861 0.99067 0.89295 1.22412 1.01485 0.98510 1.01508 1.62119 1.16061 1.44640 1.03489 1.22007 0.95396 0.96707 0.92059 1.21585 0.97281 0.97965 0.98014 1.21456 0.97964 0.99866 0.94916 1.18570 0.92250 0.92780 0.92921 0.98915 1.21524 1.18371 1.03160 1.14518 0.93175 1.25715 0.98758 0.94869 0.99121 1.70034 1.35994 1.08386 1.41115 0.85707 0.78828 0.77640 0.80050 1.19659 1.20890 1.19689 1.21944 0.93332 0.96848 0.92274 0.88306 0.87320 0.89239 0.89273 0.92343 0.93580 0.90183 0.92831 0.89695 0.95363 0.93332 0.91440 0.92591 0.96064 0.93102 0.96428 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.57 14.32 67.78 0.97 -3.60 16 2 C -0.14 -3.98 9.22 25.64 0.24 -3.75 16 3 C -0.08 -2.22 5.03 29.85 0.15 -2.07 16 4 C 0.08 2.33 2.32 44.92 0.10 2.43 16 5 H 0.09 2.23 7.99 -2.39 -0.02 2.21 16 6 C -0.18 -4.57 8.45 71.98 0.61 -3.97 16 7 N -0.54 -19.15 4.25 -871.12 -3.70 -22.85 16 8 C 0.07 2.22 5.13 86.33 0.44 2.66 16 9 C -0.11 -4.33 6.09 30.65 0.19 -4.15 16 10 C -0.10 -5.09 5.03 30.67 0.15 -4.94 16 11 C 0.05 2.79 2.26 -11.49 -0.03 2.76 16 12 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 13 C -0.54 -30.42 8.56 25.60 0.22 -30.20 16 14 H 0.05 2.78 7.75 -2.91 -0.02 2.75 16 15 C 0.01 0.80 5.30 84.65 0.45 1.24 16 16 N -0.92 -54.23 11.35 21.45 0.24 -53.98 16 17 Si 0.95 44.40 29.54 68.60 2.03 46.42 16 18 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 19 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 20 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 21 C 0.08 3.56 3.77 86.32 0.33 3.88 16 22 H 0.10 2.07 8.06 -2.91 -0.02 2.05 16 23 H 0.11 2.02 7.84 -2.91 -0.02 2.00 16 24 H 0.09 3.00 8.02 -2.92 -0.02 2.98 16 25 H 0.09 1.87 7.79 -2.39 -0.02 1.85 16 26 H 0.06 1.77 6.27 -2.39 -0.01 1.75 16 27 H 0.05 1.32 6.46 -2.39 -0.02 1.31 16 28 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.05 1.36 6.81 -2.39 -0.02 1.35 16 30 H 0.08 2.40 8.02 -2.39 -0.02 2.38 16 31 H 0.03 0.94 6.87 -2.39 -0.02 0.92 16 32 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.06 3.11 6.15 -2.39 -0.01 3.09 16 35 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 37 H 0.02 0.76 6.58 -2.39 -0.02 0.74 16 38 H 0.06 2.38 6.14 -2.39 -0.01 2.36 16 Total: -1.00 -60.86 291.71 3.38 -57.47 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 1.00 Total: 12.62 kcal Atomic # 6 Polarization: -43.51 SS G_CDS: 3.82 Total: -39.69 kcal Atomic # 7 Polarization: -73.37 SS G_CDS: -3.46 Total: -76.83 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -60.86 3.38 -57.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715787308.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.212 kcal (2) G-P(sol) polarization free energy of solvation -60.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds