Wall clock time and date at job start Mon Mar 30 2020 02:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 120.00291 * 2 1 4 4 C 1.52996 * 109.47139 * 125.00126 * 3 2 1 5 5 H 1.09006 * 109.46869 * 55.83970 * 4 3 2 6 6 C 1.53000 * 109.46935 * 175.83440 * 4 3 2 7 7 N 1.46892 * 109.47423 * 295.83741 * 4 3 2 8 8 C 1.46841 * 111.00170 * 169.33345 * 7 4 3 9 9 C 1.53038 * 109.52555 * 185.84074 * 8 7 4 10 10 C 1.53119 * 109.27740 * 300.81944 * 9 8 7 11 11 C 1.50698 * 109.52332 * 177.55641 * 10 9 8 12 12 H 1.08000 * 120.00080 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00037 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99912 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00022 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46765 * 90.00300 * 15 13 11 17 17 H 1.48496 * 109.47021 * 209.99846 * 15 13 11 18 18 H 1.48497 * 109.47237 * 330.00100 * 15 13 11 19 19 C 1.53121 * 109.16062 * 57.65283 * 10 9 8 20 20 C 1.46848 * 111.00114 * 293.54501 * 7 4 3 21 21 H 1.07994 * 120.00417 * 180.02562 * 1 2 3 22 22 H 1.08003 * 120.00225 * 359.97438 * 1 2 3 23 23 H 1.08003 * 120.00002 * 180.02562 * 2 1 3 24 24 H 1.09004 * 109.46770 * 4.99839 * 3 2 1 25 25 H 1.09009 * 109.47093 * 245.00503 * 3 2 1 26 26 H 1.09001 * 109.47513 * 300.00186 * 6 4 3 27 27 H 1.09006 * 109.46909 * 60.00555 * 6 4 3 28 28 H 1.09005 * 109.47246 * 180.02562 * 6 4 3 29 29 H 1.08998 * 109.46544 * 65.82401 * 8 7 4 30 30 H 1.08999 * 109.45405 * 305.84916 * 8 7 4 31 31 H 1.08998 * 109.50692 * 180.88418 * 9 8 7 32 32 H 1.08995 * 109.50470 * 60.76101 * 9 8 7 33 33 H 1.09000 * 109.52668 * 297.75210 * 10 9 8 34 34 H 0.97006 * 120.00154 * 179.97438 * 14 13 11 35 35 H 1.09005 * 109.50093 * 62.28505 * 19 10 9 36 36 H 1.09002 * 109.50665 * 182.40235 * 19 10 9 37 37 H 1.09004 * 109.46150 * 294.17716 * 20 7 4 38 38 H 1.09004 * 109.46168 * 54.14027 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 1 3.6925 0.4649 1.1319 6 6 3.8733 2.6116 1.1225 7 7 2.2772 1.3020 2.4395 8 6 3.1675 1.0734 3.5847 9 6 2.3323 0.9022 4.8556 10 6 1.4921 2.1621 5.0820 11 6 0.6228 1.9759 6.2988 12 1 0.6648 1.0518 6.8561 13 6 -0.2254 2.9857 6.7011 14 7 -0.2762 4.1112 6.0227 15 14 -1.3025 2.7551 8.2099 16 1 -0.5734 3.2254 9.4151 17 1 -2.5528 3.5402 8.0501 18 1 -1.6375 1.3167 8.3638 19 6 0.6093 2.4047 3.8546 20 6 1.4944 2.5323 2.6128 21 1 -0.5400 -0.9352 0.0004 22 1 -0.5401 0.9353 0.0004 23 1 1.8500 -0.9353 -0.0004 24 1 1.3586 2.1316 0.0895 25 1 2.6213 1.4026 -0.9315 26 1 4.4357 2.6346 0.1890 27 1 3.2158 3.4796 1.1721 28 1 4.5658 2.6313 1.9640 29 1 3.8355 1.9267 3.7014 30 1 3.7560 0.1722 3.4128 31 1 2.9940 0.7482 5.7080 32 1 1.6738 0.0407 4.7451 33 1 2.1510 3.0175 5.2313 34 1 -0.8732 4.8216 6.3055 35 1 -0.0764 1.5667 3.7283 36 1 0.0399 3.3240 3.9918 37 1 2.1703 3.3788 2.7340 38 1 0.8679 2.6907 1.7349 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715788557.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:04 Heat of formation + Delta-G solvation = 5.529100 kcal Electronic energy + Delta-G solvation = -16085.286696 eV Core-core repulsion = 13734.413301 eV Total energy + Delta-G solvation = -2350.873395 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.88785 -35.50959 -33.39521 -31.75843 -29.74611 -29.25806 -26.46154 -25.37486 -22.44993 -22.00116 -20.06351 -19.32525 -18.20580 -16.35768 -15.74496 -14.76072 -14.46994 -13.99266 -13.86950 -13.55703 -13.18769 -12.79120 -12.54913 -12.02146 -11.90579 -11.71850 -11.49493 -11.20064 -10.87893 -10.66928 -10.61217 -10.53815 -10.37486 -10.07124 -9.84587 -9.34367 -8.95868 -8.88052 -8.61881 -8.24105 -7.57041 -5.92632 -3.97586 2.67167 3.33889 3.40518 3.44401 4.47704 4.51109 4.97521 5.26118 5.37558 5.46933 5.48523 5.65959 5.73576 5.80565 5.87583 5.99369 6.05387 6.12556 6.18786 6.24745 6.30596 6.42744 6.47851 6.71200 6.72665 6.93812 6.94971 7.12381 7.16444 7.26376 7.53053 7.71345 7.82141 7.92098 8.12264 8.22907 8.54378 9.06153 9.66424 11.13468 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.036339 B = 0.007280 C = 0.006871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.342286 B = 3845.390819 C = 4073.983583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.129 4.129 3 C -0.086 4.086 4 C 0.082 3.918 5 H 0.074 0.926 6 C -0.186 4.186 7 N -0.523 5.523 8 C 0.060 3.940 9 C -0.106 4.106 10 C 0.049 3.951 11 C -0.509 4.509 12 H 0.053 0.947 13 C 0.060 3.940 14 N -0.892 5.892 15 Si 0.889 3.111 16 H -0.282 1.282 17 H -0.287 1.287 18 H -0.275 1.275 19 C -0.103 4.103 20 C 0.055 3.945 21 H 0.090 0.910 22 H 0.092 0.908 23 H 0.100 0.900 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.024 0.976 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.019 0.981 34 H 0.258 0.742 35 H 0.042 0.958 36 H 0.090 0.910 37 H 0.024 0.976 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.232 -4.351 -10.798 12.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.147 4.147 3 C -0.124 4.124 4 C -0.027 4.027 5 H 0.092 0.908 6 C -0.245 4.245 7 N -0.247 5.247 8 C -0.068 4.068 9 C -0.144 4.144 10 C 0.030 3.970 11 C -0.547 4.547 12 H 0.072 0.928 13 C -0.140 4.140 14 N -0.532 5.532 15 Si 0.717 3.283 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.200 1.200 19 C -0.141 4.141 20 C -0.072 4.072 21 H 0.108 0.892 22 H 0.110 0.890 23 H 0.118 0.882 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.037 0.963 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.108 0.892 37 H 0.042 0.958 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.802 -4.570 -10.808 12.679 hybrid contribution -0.031 0.632 0.929 1.124 sum 4.771 -3.939 -9.879 11.656 Atomic orbital electron populations 1.23656 0.95988 1.01228 1.02380 1.22621 0.95788 0.97670 0.98613 1.20843 0.98281 0.96268 0.96964 1.21646 0.93555 0.96661 0.90833 0.90825 1.22482 1.00643 0.99944 1.01446 1.62179 1.24498 1.37442 1.00617 1.22105 0.94280 0.98498 0.91909 1.21667 0.98009 1.01209 0.93473 1.18667 0.93268 0.91723 0.93317 1.21230 1.22178 1.00731 1.10608 0.92831 1.24965 0.97058 0.95270 0.96734 1.69885 1.38641 1.05282 1.39360 0.86650 0.80101 0.78105 0.83467 1.20842 1.21317 1.19977 1.21640 0.97836 1.02713 0.91928 1.22298 0.95992 0.89089 0.99821 0.89185 0.89007 0.88158 0.91255 0.91458 0.92841 0.92040 0.92588 0.95811 0.92753 0.93427 0.92594 0.96311 0.93183 0.93959 0.89206 0.95781 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.66 14.32 29.02 0.42 -2.24 16 2 C -0.13 -1.72 9.23 -36.02 -0.33 -2.06 16 3 C -0.09 -1.13 5.05 -27.88 -0.14 -1.27 16 4 C 0.08 1.18 2.30 -67.72 -0.16 1.02 16 5 H 0.07 1.00 7.97 -51.93 -0.41 0.59 16 6 C -0.19 -2.51 8.44 37.16 0.31 -2.20 16 7 N -0.52 -9.31 4.29 -226.70 -0.97 -10.29 16 8 C 0.06 1.10 5.14 -3.84 -0.02 1.08 16 9 C -0.11 -2.28 5.32 -26.65 -0.14 -2.42 16 10 C 0.05 1.23 2.16 -91.65 -0.20 1.04 16 11 C -0.51 -14.25 8.56 -34.44 -0.29 -14.54 16 12 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 13 C 0.06 1.69 5.31 -17.82 -0.09 1.60 16 14 N -0.89 -25.74 11.37 55.43 0.63 -25.11 16 15 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 18 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 19 C -0.10 -2.47 5.12 -26.65 -0.14 -2.61 16 20 C 0.06 1.09 4.53 -3.84 -0.02 1.07 16 21 H 0.09 1.12 8.06 -52.49 -0.42 0.70 16 22 H 0.09 1.27 7.84 -52.48 -0.41 0.86 16 23 H 0.10 1.25 8.06 -52.48 -0.42 0.83 16 24 H 0.07 0.97 5.93 -51.93 -0.31 0.67 16 25 H 0.07 0.75 8.14 -51.92 -0.42 0.32 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.89 6.46 -51.93 -0.34 0.55 16 28 H 0.06 0.79 6.84 -51.93 -0.36 0.43 16 29 H 0.02 0.44 6.90 -51.93 -0.36 0.08 16 30 H 0.05 0.89 8.01 -51.93 -0.42 0.47 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 35 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.09 2.40 6.18 -51.93 -0.32 2.08 16 37 H 0.02 0.49 6.57 -51.93 -0.34 0.15 16 38 H 0.05 1.02 6.17 -51.93 -0.32 0.70 16 LS Contribution 291.89 15.07 4.40 4.40 Total: -1.00 -28.23 291.89 -8.27 -36.50 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -6.50 Total: -0.57 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -0.80 Total: -21.52 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: -0.34 Total: -35.40 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.23 -8.27 -36.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715788557.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.031 kcal (2) G-P(sol) polarization free energy of solvation -28.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds