Wall clock time and date at job start Mon Mar 30 2020 02:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09006 * 109.47229 * 2 1 4 4 C 1.50706 * 109.47438 * 119.99541 * 2 1 3 5 5 H 1.07993 * 120.00300 * 114.31893 * 4 2 1 6 6 C 1.37883 * 119.99652 * 294.32633 * 4 2 1 7 7 N 1.31510 * 119.99676 * 155.93470 * 6 4 2 8 8 Si 1.86802 * 120.00060 * 335.92877 * 6 4 2 9 9 H 1.48498 * 109.47191 * 180.02562 * 8 6 4 10 10 H 1.48500 * 109.46977 * 300.00491 * 8 6 4 11 11 H 1.48505 * 109.46797 * 60.00335 * 8 6 4 12 12 N 1.46898 * 109.47292 * 239.99611 * 2 1 3 13 13 C 1.46899 * 111.00267 * 132.93641 * 12 2 1 14 14 C 1.52996 * 112.85326 * 175.29870 * 13 12 2 15 15 C 1.53786 * 113.61378 * 48.80574 * 14 13 12 16 16 C 1.53947 * 87.02002 * 220.04757 * 15 14 13 17 17 C 1.53778 * 113.61574 * 311.20017 * 14 13 12 18 18 C 1.53781 * 113.61569 * 43.99372 * 13 12 2 19 19 C 1.53775 * 87.08549 * 220.02115 * 18 13 12 20 20 C 1.53778 * 113.61384 * 306.49982 * 13 12 2 21 21 H 1.09008 * 109.47151 * 184.92886 * 1 2 3 22 22 H 1.08999 * 109.47715 * 304.92884 * 1 2 3 23 23 H 1.09000 * 109.47207 * 64.92841 * 1 2 3 24 24 H 0.97001 * 120.00347 * 354.95474 * 7 6 4 25 25 H 1.00905 * 111.00219 * 256.88930 * 12 2 1 26 26 H 1.09000 * 112.85361 * 180.02562 * 14 13 12 27 27 H 1.09005 * 113.60896 * 334.56635 * 15 14 13 28 28 H 1.09002 * 113.61523 * 105.46482 * 15 14 13 29 29 H 1.09004 * 113.53945 * 270.80908 * 16 15 14 30 30 H 1.09001 * 113.74524 * 139.93853 * 16 15 14 31 31 H 1.09003 * 113.61053 * 254.52660 * 17 14 13 32 32 H 1.08999 * 113.61375 * 25.34308 * 17 14 13 33 33 H 1.09002 * 113.61353 * 334.57108 * 18 13 12 34 34 H 1.09001 * 113.61914 * 105.46930 * 18 13 12 35 35 H 1.08998 * 113.61450 * 270.88575 * 19 18 13 36 36 H 1.09000 * 113.61816 * 139.97526 * 19 18 13 37 37 H 1.08998 * 113.61666 * 254.52805 * 20 13 12 38 38 H 1.09005 * 113.61546 * 25.43228 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.5755 -1.6387 1.1342 6 6 1.7984 -0.1748 2.4794 7 7 1.7900 -0.9548 3.5382 8 14 1.4935 1.6585 2.6674 9 1 1.2710 1.9790 4.1002 10 1 2.6737 2.4101 2.1700 11 1 0.2939 2.0439 1.8814 12 7 2.0196 -0.6926 -1.1994 13 6 3.0759 0.0844 -1.8616 14 6 3.6967 -0.6503 -3.0514 15 6 2.6589 -1.2337 -4.0248 16 6 3.5717 -2.4688 -4.1312 17 6 4.1035 -2.0995 -2.7364 18 6 4.1122 0.6701 -0.8880 19 6 4.0899 1.9415 -1.7527 20 6 2.6691 1.5336 -2.1766 21 1 -0.3634 -1.0239 0.0883 22 1 -0.3634 0.5884 0.8425 23 1 -0.3633 0.4355 -0.9308 24 1 1.8753 -1.9154 3.4337 25 1 2.3416 -1.6219 -0.9742 26 1 4.4808 -0.0740 -3.5425 27 1 1.6946 -1.4421 -3.5614 28 1 2.5702 -0.6736 -4.9557 29 1 4.3208 -2.3899 -4.9191 30 1 3.0298 -3.4143 -4.1556 31 1 5.1794 -2.2373 -2.6287 32 1 3.5358 -2.5445 -1.9192 33 1 3.7273 0.8212 0.1205 34 1 5.0692 0.1485 -0.9031 35 1 4.8107 1.9263 -2.5702 36 1 4.1247 2.8642 -1.1735 37 1 2.4610 1.7091 -3.2320 38 1 1.8896 1.9208 -1.5203 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717869510.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:50 Heat of formation + Delta-G solvation = 20.438531 kcal Electronic energy + Delta-G solvation = -16511.907812 eV Core-core repulsion = 14161.680938 eV Total energy + Delta-G solvation = -2350.226874 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.42379 -38.17332 -36.20063 -33.86948 -30.55006 -27.33960 -26.90920 -26.49065 -25.73033 -23.67494 -21.96114 -20.56848 -19.77264 -18.67390 -17.24540 -16.70638 -16.02621 -15.76465 -15.13212 -14.86605 -14.64052 -14.20294 -13.82790 -13.64715 -13.47686 -13.15762 -12.82713 -12.54186 -12.33226 -12.25115 -12.10864 -11.91466 -11.61300 -11.51680 -11.36218 -11.16949 -11.11867 -10.84423 -10.57123 -10.34367 -9.19576 -8.52139 -6.31829 1.42427 1.47242 1.66337 2.46395 3.00944 3.46682 3.66078 3.80535 3.86433 3.97655 4.03725 4.07036 4.26910 4.47476 4.63106 4.71804 4.83527 4.90673 4.93265 4.95290 5.00143 5.02394 5.08432 5.10893 5.11565 5.17048 5.24255 5.26698 5.33668 5.51378 5.62010 5.66951 5.77543 5.95152 6.04734 6.32401 6.76703 6.90378 7.41211 8.61335 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.032618 B = 0.009742 C = 0.008931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.213451 B = 2873.408604 C = 3134.261908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.187 3.813 3 H 0.033 0.967 4 C -0.614 4.614 5 H 0.018 0.982 6 C -0.009 4.009 7 N -0.933 5.933 8 Si 1.067 2.933 9 H -0.290 1.290 10 H -0.267 1.267 11 H -0.247 1.247 12 N -0.663 5.663 13 C 0.105 3.895 14 C -0.080 4.080 15 C -0.123 4.123 16 C -0.130 4.130 17 C -0.144 4.144 18 C -0.184 4.184 19 C -0.128 4.128 20 C -0.127 4.127 21 H 0.029 0.971 22 H 0.036 0.964 23 H 0.050 0.950 24 H 0.254 0.746 25 H 0.326 0.674 26 H 0.105 0.895 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.052 0.948 35 H 0.100 0.900 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.713 4.004 -15.701 16.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.077 3.923 3 H 0.050 0.950 4 C -0.653 4.653 5 H 0.036 0.964 6 C -0.209 4.209 7 N -0.568 5.568 8 Si 0.889 3.111 9 H -0.217 1.217 10 H -0.192 1.192 11 H -0.172 1.172 12 N -0.293 5.293 13 C 0.013 3.987 14 C -0.098 4.098 15 C -0.161 4.161 16 C -0.168 4.168 17 C -0.181 4.181 18 C -0.224 4.224 19 C -0.166 4.166 20 C -0.165 4.165 21 H 0.048 0.952 22 H 0.055 0.945 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.145 0.855 26 H 0.123 0.877 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.118 0.882 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.939 5.400 -14.997 16.209 hybrid contribution 1.049 -1.991 0.451 2.295 sum 3.988 3.409 -14.547 15.464 Atomic orbital electron populations 1.21955 0.98035 0.99583 0.99086 1.19345 0.91916 0.94340 0.86694 0.94966 1.22615 1.39383 1.09150 0.94107 0.96401 1.26909 0.92846 1.08960 0.92234 1.70956 1.47021 1.05472 1.33361 0.83772 0.78986 0.71985 0.76329 1.21656 1.19189 1.17186 1.60618 1.36309 1.05204 1.27121 1.22232 0.89902 0.92740 0.93830 1.22322 0.98450 0.94617 0.94446 1.22817 0.97855 0.96794 0.98584 1.22802 0.99374 0.98213 0.96373 1.22894 1.00450 0.96808 0.97990 1.23744 1.00023 0.99009 0.99595 1.22737 0.97454 0.96794 0.99605 1.23075 0.96782 0.95043 1.01602 0.95205 0.94493 0.93101 0.93760 0.85532 0.87674 0.90600 0.90655 0.88706 0.91675 0.91641 0.92271 0.91671 0.92873 0.88204 0.91829 0.89904 0.91556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.70 9.22 71.98 0.66 -5.04 16 2 C 0.19 8.64 1.15 44.17 0.05 8.69 16 3 H 0.03 1.50 3.14 -2.38 -0.01 1.49 16 4 C -0.61 -34.24 7.90 25.60 0.20 -34.04 16 5 H 0.02 1.10 7.65 -2.91 -0.02 1.08 16 6 C -0.01 -0.55 5.27 84.66 0.45 -0.10 16 7 N -0.93 -58.55 13.70 21.45 0.29 -58.26 16 8 Si 1.07 50.24 26.59 68.60 1.82 52.07 16 9 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 10 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.25 -10.51 5.92 99.48 0.59 -9.92 16 12 N -0.66 -26.69 5.51 -449.53 -2.48 -29.17 16 13 C 0.10 3.52 1.09 4.05 0.00 3.52 16 14 C -0.08 -2.14 3.14 -10.27 -0.03 -2.17 16 15 C -0.12 -3.03 7.55 31.18 0.24 -2.79 16 16 C -0.13 -2.88 8.09 31.18 0.25 -2.63 16 17 C -0.14 -3.92 7.53 31.12 0.23 -3.69 16 18 C -0.18 -6.70 6.90 31.12 0.21 -6.49 16 19 C -0.13 -3.66 7.77 31.12 0.24 -3.41 16 20 C -0.13 -3.90 7.00 31.12 0.22 -3.68 16 21 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 22 H 0.04 1.65 5.49 -2.39 -0.01 1.64 16 23 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.25 16.16 8.73 -92.71 -0.81 15.35 16 25 H 0.33 14.09 5.82 -89.69 -0.52 13.57 16 26 H 0.11 2.43 7.56 -2.39 -0.02 2.41 16 27 H 0.08 2.22 7.43 -2.38 -0.02 2.20 16 28 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.06 1.93 6.13 -2.39 -0.01 1.91 16 33 H 0.06 2.92 5.49 -2.39 -0.01 2.91 16 34 H 0.05 1.87 8.10 -2.39 -0.02 1.85 16 35 H 0.10 2.29 7.72 -2.39 -0.02 2.27 16 36 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.08 2.14 8.10 -2.39 -0.02 2.13 16 38 H 0.07 2.29 6.29 -2.38 -0.01 2.27 16 Total: -1.00 -61.63 283.20 2.73 -58.90 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: 0.36 Total: 28.30 kcal Atomic # 6 Polarization: -54.56 SS G_CDS: 2.73 Total: -51.83 kcal Atomic # 7 Polarization: -85.25 SS G_CDS: -2.18 Total: -87.43 kcal Atomic # 14 Polarization: 50.24 SS G_CDS: 1.82 Total: 52.07 kcal Total: -61.63 2.73 -58.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717869510.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.336 kcal (2) G-P(sol) polarization free energy of solvation -61.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds