Wall clock time and date at job start Mon Mar 30 2020 02:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47164 * 2 1 4 4 C 1.50698 * 109.47180 * 240.00148 * 2 1 3 5 5 H 1.07999 * 120.00301 * 239.99763 * 4 2 1 6 6 C 1.37877 * 119.99955 * 60.00040 * 4 2 1 7 7 N 1.31520 * 119.99876 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00244 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47434 * 180.02562 * 8 6 4 10 10 H 1.48500 * 109.46969 * 299.99838 * 8 6 4 11 11 H 1.48497 * 109.47552 * 59.99613 * 8 6 4 12 12 N 1.46902 * 109.47419 * 120.00447 * 2 1 3 13 13 C 1.46906 * 110.99916 * 258.85734 * 12 2 1 14 14 C 1.52990 * 112.85053 * 172.16328 * 13 12 2 15 15 C 1.53788 * 113.61496 * 47.16802 * 14 13 12 16 16 C 1.53778 * 87.08208 * 220.01792 * 15 14 13 17 17 C 1.53781 * 113.61703 * 309.67023 * 14 13 12 18 18 C 1.53789 * 113.60969 * 40.86131 * 13 12 2 19 19 C 1.53790 * 87.07830 * 220.01662 * 18 13 12 20 20 C 1.53782 * 87.08093 * 25.43294 * 19 18 13 21 21 H 1.09000 * 109.46867 * 297.16049 * 1 2 3 22 22 H 1.08997 * 109.46938 * 57.15774 * 1 2 3 23 23 H 1.09004 * 109.46900 * 177.16362 * 1 2 3 24 24 H 0.97004 * 119.99823 * 179.97438 * 7 6 4 25 25 H 1.00898 * 111.00126 * 134.90376 * 12 2 1 26 26 H 1.09002 * 112.84962 * 178.47033 * 14 13 12 27 27 H 1.09001 * 113.60749 * 334.56978 * 15 14 13 28 28 H 1.08997 * 113.61395 * 105.46894 * 15 14 13 29 29 H 1.09001 * 113.61343 * 270.88545 * 16 15 14 30 30 H 1.08996 * 113.61624 * 139.97600 * 16 15 14 31 31 H 1.09004 * 113.61650 * 254.52817 * 17 14 13 32 32 H 1.09001 * 113.61339 * 25.34685 * 17 14 13 33 33 H 1.09001 * 113.61564 * 334.56421 * 18 13 12 34 34 H 1.09004 * 113.61397 * 105.47317 * 18 13 12 35 35 H 1.08999 * 113.61257 * 270.88553 * 19 18 13 36 36 H 1.08999 * 113.61262 * 139.97581 * 19 18 13 37 37 H 1.09001 * 113.61617 * 220.01777 * 20 19 18 38 38 H 1.09007 * 113.61346 * 89.11293 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9427 0.8298 -2.6033 8 14 2.3213 -1.1202 -4.0080 9 1 1.8269 -0.4196 -5.2205 10 1 3.8063 -1.1207 -4.0082 11 1 1.8259 -2.5200 -4.0079 12 7 2.0197 -0.6926 1.1994 13 6 2.4451 0.2687 2.2256 14 6 2.7829 -0.3979 3.5605 15 6 3.6886 -1.6329 3.4207 16 6 2.8250 -2.2920 4.5092 17 6 1.6897 -1.3544 4.0655 18 6 1.5086 1.4811 2.3598 19 6 2.7731 2.3398 2.5293 20 6 3.5215 1.2534 1.7390 21 1 -0.3633 0.4691 0.9144 22 1 -0.3633 0.5573 -0.8634 23 1 -0.3633 -1.0265 -0.0509 24 1 0.7087 1.1614 -3.4844 25 1 2.7672 -1.3300 0.9690 26 1 3.1239 0.3122 4.3140 27 1 3.6140 -2.1212 2.4490 28 1 4.7190 -1.4558 3.7286 29 1 3.1785 -2.1006 5.5224 30 1 2.6183 -3.3460 4.3239 31 1 1.1064 -0.9524 4.8941 32 1 1.0677 -1.7654 3.2703 33 1 0.9486 1.7030 1.4513 34 1 0.8793 1.4504 3.2493 35 1 3.1028 2.4320 3.5641 36 1 2.7224 3.2984 2.0130 37 1 4.5172 1.0387 2.1272 38 1 3.5118 1.4130 0.6607 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717869513.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:52 Heat of formation + Delta-G solvation = 23.370991 kcal Electronic energy + Delta-G solvation = -16375.442701 eV Core-core repulsion = 14025.342988 eV Total energy + Delta-G solvation = -2350.099713 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.36873 -38.12626 -36.10456 -33.54809 -30.17003 -27.57625 -26.86158 -26.70900 -25.71639 -23.63243 -22.08410 -20.54614 -18.73928 -18.68188 -16.90922 -16.80842 -16.29279 -15.73871 -15.46748 -14.68876 -14.41706 -13.77276 -13.55805 -13.53611 -13.28591 -13.05958 -12.83391 -12.64354 -12.30053 -12.22353 -12.11419 -11.99032 -11.93838 -11.54514 -11.32158 -11.11344 -10.86420 -10.78277 -10.57071 -10.44742 -8.78955 -8.10963 -6.24631 1.39826 1.41137 1.48513 2.40832 3.16753 3.55975 3.71849 3.85296 3.91892 3.97998 4.07388 4.13375 4.32104 4.50816 4.77355 4.79891 4.92192 4.96617 4.98786 5.02610 5.06581 5.08902 5.14681 5.18715 5.22885 5.29876 5.34345 5.38374 5.50404 5.58583 5.65670 5.73382 5.87646 6.05384 6.24230 6.54642 6.90746 7.13270 7.45587 8.93224 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.031953 B = 0.008539 C = 0.007817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.089147 B = 3278.209780 C = 3580.917620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.217 3.783 3 H -0.002 1.002 4 C -0.543 4.543 5 H 0.053 0.947 6 C 0.015 3.985 7 N -0.916 5.916 8 Si 0.955 3.045 9 H -0.284 1.284 10 H -0.273 1.273 11 H -0.273 1.273 12 N -0.669 5.669 13 C 0.108 3.892 14 C -0.079 4.079 15 C -0.136 4.136 16 C -0.130 4.130 17 C -0.128 4.128 18 C -0.140 4.140 19 C -0.126 4.126 20 C -0.175 4.175 21 H 0.026 0.974 22 H 0.049 0.951 23 H 0.018 0.982 24 H 0.261 0.739 25 H 0.328 0.672 26 H 0.103 0.897 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.399 -1.339 12.809 13.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.109 3.891 3 H 0.016 0.984 4 C -0.581 4.581 5 H 0.071 0.929 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.781 3.219 9 H -0.210 1.210 10 H -0.198 1.198 11 H -0.198 1.198 12 N -0.299 5.299 13 C 0.016 3.984 14 C -0.097 4.097 15 C -0.173 4.173 16 C -0.167 4.167 17 C -0.165 4.165 18 C -0.177 4.177 19 C -0.163 4.163 20 C -0.215 4.215 21 H 0.045 0.955 22 H 0.068 0.932 23 H 0.037 0.963 24 H 0.070 0.930 25 H 0.147 0.853 26 H 0.121 0.879 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.112 0.888 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.120 0.880 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.673 -1.328 12.929 13.507 hybrid contribution 0.841 0.118 -1.834 2.021 sum 4.515 -1.210 11.096 12.040 Atomic orbital electron populations 1.21624 0.98521 0.98332 0.98469 1.18892 0.91906 0.92420 0.85901 0.98429 1.21777 1.31442 1.12554 0.92342 0.92855 1.25666 0.95254 0.95680 1.01801 1.70025 1.37468 1.24024 1.23984 0.85664 0.78668 0.78748 0.78845 1.20993 1.19784 1.19804 1.60524 1.39110 1.19086 1.11210 1.22213 0.93469 0.89652 0.93054 1.22295 0.97911 0.95626 0.93911 1.22856 0.98246 0.96855 0.99365 1.22758 0.96472 0.98772 0.98747 1.22786 0.96437 0.97161 1.00124 1.23218 0.96898 0.96188 1.01435 1.22700 0.96189 0.96619 1.00822 1.23570 0.99328 0.99350 0.99218 0.95509 0.93208 0.96326 0.93008 0.85292 0.87888 0.91430 0.91017 0.88836 0.91712 0.91508 0.90992 0.91755 0.90961 0.87952 0.92397 0.91119 0.93041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.66 8.76 71.98 0.63 -5.03 16 2 C 0.22 10.98 1.68 44.17 0.07 11.06 16 3 H 0.00 -0.10 4.73 -2.39 -0.01 -0.11 16 4 C -0.54 -30.00 8.60 25.60 0.22 -29.78 16 5 H 0.05 2.90 7.41 -2.91 -0.02 2.87 16 6 C 0.02 0.85 5.30 84.65 0.45 1.30 16 7 N -0.92 -53.35 11.35 21.45 0.24 -53.10 16 8 Si 0.95 44.09 29.54 68.60 2.03 46.12 16 9 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 12 N -0.67 -28.08 5.39 -449.50 -2.42 -30.51 16 13 C 0.11 3.75 1.04 4.05 0.00 3.75 16 14 C -0.08 -2.15 3.15 -10.27 -0.03 -2.18 16 15 C -0.14 -3.47 7.53 31.12 0.23 -3.24 16 16 C -0.13 -2.90 8.08 31.12 0.25 -2.65 16 17 C -0.13 -3.40 7.54 31.12 0.23 -3.16 16 18 C -0.14 -4.90 6.37 31.13 0.20 -4.70 16 19 C -0.13 -3.80 7.77 31.12 0.24 -3.56 16 20 C -0.18 -6.16 7.03 31.12 0.22 -5.94 16 21 H 0.03 1.23 6.48 -2.39 -0.02 1.21 16 22 H 0.05 2.78 6.15 -2.39 -0.01 2.76 16 23 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.26 14.52 8.31 -92.71 -0.77 13.74 16 25 H 0.33 13.92 6.27 -89.70 -0.56 13.36 16 26 H 0.10 2.42 7.56 -2.39 -0.02 2.40 16 27 H 0.07 2.01 6.35 -2.39 -0.02 1.99 16 28 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.07 2.34 7.49 -2.39 -0.02 2.32 16 33 H 0.06 2.72 4.69 -2.39 -0.01 2.71 16 34 H 0.07 2.26 8.10 -2.39 -0.02 2.24 16 35 H 0.10 2.45 7.72 -2.39 -0.02 2.44 16 36 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.07 2.20 8.10 -2.39 -0.02 2.18 16 38 H 0.05 2.24 6.40 -2.38 -0.02 2.22 16 Total: -1.00 -58.79 285.05 3.04 -55.75 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: 0.47 Total: 25.87 kcal Atomic # 6 Polarization: -46.85 SS G_CDS: 2.73 Total: -44.12 kcal Atomic # 7 Polarization: -81.43 SS G_CDS: -2.18 Total: -83.61 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -58.79 3.04 -55.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717869513.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.121 kcal (2) G-P(sol) polarization free energy of solvation -58.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds