Wall clock time and date at job start Mon Mar 30 2020 02:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47156 * 2 1 4 4 C 1.53001 * 109.47495 * 120.00339 * 2 1 3 5 5 C 1.50692 * 109.47462 * 185.00216 * 4 2 1 6 6 H 1.08004 * 120.00318 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00384 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99358 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00074 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47195 * 60.00770 * 9 7 5 11 11 H 1.48500 * 109.46908 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47324 * 299.99949 * 9 7 5 13 13 N 1.46903 * 109.47046 * 240.00356 * 2 1 3 14 14 C 1.46896 * 111.00202 * 85.19818 * 13 2 1 15 15 C 1.51853 * 108.65082 * 210.90148 * 14 13 2 16 16 C 1.53018 * 110.73400 * 172.27354 * 15 14 13 17 17 C 1.51372 * 108.52582 * 85.90344 * 16 15 14 18 18 C 1.29521 * 120.36013 * 288.10222 * 17 16 15 19 19 C 1.51380 * 120.35965 * 359.97438 * 18 17 16 20 20 C 1.51842 * 108.65318 * 86.93634 * 14 13 2 21 21 H 1.08997 * 109.46945 * 184.65105 * 1 2 3 22 22 H 1.08997 * 109.46969 * 304.65375 * 1 2 3 23 23 H 1.09003 * 109.46804 * 64.65533 * 1 2 3 24 24 H 1.09004 * 109.46386 * 304.99984 * 4 2 1 25 25 H 1.08995 * 109.47012 * 64.99386 * 4 2 1 26 26 H 0.97000 * 119.99216 * 179.97438 * 8 7 5 27 27 H 1.00900 * 110.99703 * 321.23745 * 13 2 1 28 28 H 1.08996 * 108.60262 * 328.91722 * 14 13 2 29 29 H 1.09005 * 109.22209 * 292.72536 * 15 14 13 30 30 H 1.09000 * 109.22071 * 52.06979 * 15 14 13 31 31 H 1.08994 * 109.67797 * 326.18124 * 16 15 14 32 32 H 1.09011 * 109.64406 * 205.60043 * 16 15 14 33 33 H 1.08006 * 119.82334 * 108.07830 * 17 16 15 34 34 H 1.07996 * 119.82288 * 180.02562 * 18 17 16 35 35 H 1.09001 * 109.60831 * 312.16272 * 19 18 17 36 36 H 1.09002 * 109.61421 * 191.64012 * 19 18 17 37 37 H 1.08999 * 109.22263 * 307.93334 * 20 14 13 38 38 H 1.09001 * 109.22172 * 67.27306 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3127 6 1 4.0791 -0.0861 0.5392 7 6 4.2304 -1.1927 2.3582 8 7 3.5764 -1.8371 3.2999 9 14 6.0922 -1.0614 2.4365 10 1 6.4855 0.3694 2.4952 11 1 6.5872 -1.7614 3.6490 12 1 6.6839 -1.6883 1.2274 13 7 2.0197 -0.6924 -1.1995 14 6 2.0869 0.2238 -2.3457 15 6 1.8340 -0.5685 -3.6163 16 6 1.7034 0.3663 -4.8207 17 6 3.0883 0.6497 -5.3620 18 6 3.9046 1.4113 -4.7053 19 6 3.4838 2.0281 -3.3885 20 6 3.4327 0.9267 -2.3273 21 1 -0.3633 -1.0243 0.0833 22 1 -0.3633 0.5843 0.8453 23 1 -0.3633 0.4399 -0.9288 24 1 1.6054 -0.2618 2.1369 25 1 1.7517 -1.7715 1.2055 26 1 4.0609 -2.2438 4.0352 27 1 1.4476 -1.4960 -1.4119 28 1 1.3014 0.9720 -2.2394 29 1 2.6635 -1.2561 -3.7815 30 1 0.9121 -1.1395 -3.5056 31 1 1.2333 1.2998 -4.5115 32 1 1.0999 -0.1122 -5.5922 33 1 3.3977 0.2141 -6.3007 34 1 4.8905 1.6080 -5.0998 35 1 2.4976 2.4799 -3.4948 36 1 4.2072 2.7880 -3.0927 37 1 3.5936 1.3681 -1.3438 38 1 4.2200 0.1996 -2.5266 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718047619.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:54 Heat of formation + Delta-G solvation = -6.261520 kcal Electronic energy + Delta-G solvation = -15811.236666 eV Core-core repulsion = 13459.851991 eV Total energy + Delta-G solvation = -2351.384675 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.90067 -36.08203 -32.93742 -31.71747 -31.54567 -28.24431 -27.17376 -24.05815 -23.84287 -22.78351 -19.91461 -19.52259 -17.86860 -16.33355 -15.99723 -15.30566 -14.49375 -14.15971 -14.06565 -13.41517 -12.88485 -12.82552 -12.61039 -12.37805 -11.94738 -11.70416 -11.42176 -11.37216 -11.22173 -10.83911 -10.57045 -10.48693 -10.39063 -10.25002 -10.10338 -9.89316 -9.19322 -8.92225 -8.88573 -8.19509 -7.46869 -5.82267 -3.79247 2.39859 3.44208 3.47773 3.51462 4.61283 4.70267 4.80520 4.99231 5.26245 5.31675 5.39466 5.53304 5.56978 5.66949 5.75436 5.82163 5.87273 5.89425 5.97897 6.00216 6.09613 6.15479 6.38936 6.40013 6.48880 6.60888 6.68770 6.74835 6.86330 7.01001 7.12231 7.65571 7.77331 8.11760 8.14022 8.27474 8.67293 9.25940 9.81543 11.30041 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.027994 B = 0.007726 C = 0.006496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.958507 B = 3623.121593 C = 4309.147332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.089 3.911 3 H 0.063 0.937 4 C 0.033 3.967 5 C -0.485 4.485 6 H 0.059 0.941 7 C 0.049 3.951 8 N -0.906 5.906 9 Si 0.888 3.112 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.278 1.278 13 N -0.665 5.665 14 C 0.093 3.907 15 C -0.116 4.116 16 C -0.087 4.087 17 C -0.165 4.165 18 C -0.150 4.150 19 C -0.094 4.094 20 C -0.100 4.100 21 H 0.051 0.949 22 H 0.054 0.946 23 H 0.036 0.964 24 H 0.015 0.985 25 H 0.016 0.984 26 H 0.257 0.743 27 H 0.330 0.670 28 H 0.030 0.970 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.850 5.405 -14.841 16.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.020 4.020 3 H 0.081 0.919 4 C -0.004 4.004 5 C -0.524 4.524 6 H 0.077 0.923 7 C -0.150 4.150 8 N -0.547 5.547 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.204 1.204 13 N -0.295 5.295 14 C -0.017 4.017 15 C -0.154 4.154 16 C -0.125 4.125 17 C -0.183 4.183 18 C -0.168 4.168 19 C -0.131 4.131 20 C -0.138 4.138 21 H 0.070 0.930 22 H 0.073 0.927 23 H 0.055 0.945 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.066 0.934 27 H 0.148 0.852 28 H 0.048 0.952 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.155 5.375 -14.490 15.773 hybrid contribution 0.173 0.030 -0.130 0.218 sum -2.982 5.405 -14.620 15.870 Atomic orbital electron populations 1.22561 0.99744 1.01312 1.00255 1.21826 0.89673 0.98105 0.92413 0.91864 1.19102 0.96207 0.95322 0.89768 1.21131 0.91921 1.32723 1.06630 0.92322 1.25005 0.97866 0.96028 0.96109 1.69960 1.35190 1.37113 1.12418 0.86719 0.86607 0.77909 0.77062 1.20586 1.21689 1.20410 1.60594 1.57712 1.08587 1.02593 1.21110 0.96380 0.94137 0.90094 1.21521 1.01818 0.98142 0.93899 1.20759 0.94732 0.99789 0.97202 1.22472 0.96401 0.99810 0.99610 1.22588 0.98942 0.98755 0.96533 1.20871 1.01073 0.98005 0.93186 1.21281 0.97681 0.96728 0.98155 0.93037 0.92692 0.94487 0.96646 0.96601 0.93369 0.85192 0.95215 0.91055 0.92277 0.91325 0.91889 0.87963 0.87905 0.91555 0.91731 0.90952 0.91398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.08 9.15 37.16 0.34 -2.73 16 2 C 0.09 1.82 2.26 -67.71 -0.15 1.67 16 3 H 0.06 1.33 7.17 -51.93 -0.37 0.95 16 4 C 0.03 0.86 4.65 -27.89 -0.13 0.73 16 5 C -0.49 -13.82 8.84 -34.44 -0.30 -14.13 16 6 H 0.06 1.65 7.74 -52.48 -0.41 1.25 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.34 16 8 N -0.91 -27.85 13.29 55.43 0.74 -27.11 16 9 Si 0.89 22.45 29.54 -169.99 -5.02 17.43 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 13 N -0.66 -12.47 5.75 -100.98 -0.58 -13.05 16 14 C 0.09 1.44 1.85 -68.89 -0.13 1.32 16 15 C -0.12 -1.52 4.92 -27.30 -0.13 -1.66 16 16 C -0.09 -0.98 5.62 -27.54 -0.15 -1.14 16 17 C -0.16 -1.89 9.34 -35.28 -0.33 -2.22 16 18 C -0.15 -1.81 9.34 -35.28 -0.33 -2.14 16 19 C -0.09 -1.21 5.62 -27.53 -0.15 -1.37 16 20 C -0.10 -1.61 5.15 -27.30 -0.14 -1.75 16 21 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 22 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.04 0.56 7.42 -51.93 -0.39 0.17 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.33 5.83 7.82 -39.29 -0.31 5.52 16 28 H 0.03 0.46 6.78 -51.93 -0.35 0.11 16 29 H 0.07 1.01 7.86 -51.93 -0.41 0.60 16 30 H 0.06 0.73 7.89 -51.93 -0.41 0.32 16 31 H 0.07 0.77 6.68 -51.93 -0.35 0.43 16 32 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 33 H 0.10 1.03 8.06 -52.48 -0.42 0.61 16 34 H 0.10 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.07 0.82 6.68 -51.93 -0.35 0.47 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 1.32 7.40 -51.93 -0.38 0.93 16 38 H 0.07 1.18 7.86 -51.93 -0.41 0.78 16 LS Contribution 296.68 15.07 4.47 4.47 Total: -1.00 -30.05 296.68 -8.75 -38.80 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -6.65 Total: 1.53 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: -1.71 Total: -22.07 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.16 Total: -40.16 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.05 -8.75 -38.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718047619.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.538 kcal (2) G-P(sol) polarization free energy of solvation -30.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds