Wall clock time and date at job start Mon Mar 30 2020 02:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47151 * 2 1 4 4 C 1.50708 * 109.46875 * 240.00655 * 2 1 3 5 5 H 1.07991 * 119.99789 * 240.00567 * 4 2 1 6 6 C 1.37877 * 120.00008 * 59.99878 * 4 2 1 7 7 N 1.31514 * 120.00089 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99938 * 0.02562 * 6 4 2 9 9 H 1.48506 * 109.47297 * 269.99556 * 8 6 4 10 10 H 1.48503 * 109.47261 * 149.99737 * 8 6 4 11 11 H 1.48500 * 109.47454 * 29.99730 * 8 6 4 12 12 N 1.46893 * 109.47225 * 120.00695 * 2 1 3 13 13 C 1.46899 * 111.00012 * 274.99984 * 12 2 1 14 14 H 1.08990 * 110.24833 * 32.98707 * 13 12 2 15 15 C 1.53918 * 110.27641 * 270.87049 * 13 12 2 16 16 C 1.53670 * 105.86393 * 212.09952 * 15 13 12 17 17 C 1.53211 * 107.21319 * 19.17650 * 16 15 13 18 18 H 1.08993 * 111.24343 * 237.02462 * 17 16 15 19 19 C 1.53538 * 110.22344 * 114.18693 * 17 16 15 20 20 C 1.54266 * 106.52467 * 240.28592 * 19 17 16 21 21 C 1.54748 * 104.14644 * 25.31974 * 20 19 17 22 22 C 1.53984 * 110.27781 * 154.99842 * 13 12 2 23 23 H 1.09003 * 112.37181 * 270.25180 * 22 13 12 24 24 H 1.08998 * 109.46607 * 299.99478 * 1 2 3 25 25 H 1.09003 * 109.47241 * 59.99009 * 1 2 3 26 26 H 1.08996 * 109.47696 * 179.97438 * 1 2 3 27 27 H 0.96997 * 119.99848 * 180.02562 * 7 6 4 28 28 H 1.00901 * 111.00231 * 151.04180 * 12 2 1 29 29 H 1.09004 * 110.17224 * 331.19393 * 15 13 12 30 30 H 1.08997 * 110.16969 * 92.99935 * 15 13 12 31 31 H 1.08997 * 109.89175 * 259.78446 * 16 15 13 32 32 H 1.08993 * 110.03375 * 138.65471 * 16 15 13 33 33 H 1.08996 * 110.05134 * 121.01248 * 19 17 16 34 34 H 1.09006 * 110.08602 * 359.56806 * 19 17 16 35 35 H 1.09000 * 110.49415 * 266.65626 * 20 19 17 36 36 H 1.08999 * 110.61254 * 144.04110 * 20 19 17 37 37 H 1.08993 * 110.65845 * 204.04711 * 21 20 19 38 38 H 1.09004 * 110.65082 * 80.94709 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6531 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 2.1371 -0.8593 -3.5567 8 14 0.6258 1.2801 -2.6540 9 1 -0.8021 0.8748 -2.6992 10 1 0.9771 1.9958 -3.9068 11 1 0.8491 2.1775 -1.4921 12 7 2.0197 -0.6926 1.1993 13 6 2.0825 0.2223 2.3468 14 1 1.2836 0.9610 2.2845 15 6 3.4537 0.9196 2.3987 16 6 3.7516 1.1502 3.8885 17 6 2.8524 0.1978 4.6834 18 1 2.2263 0.7431 5.3895 19 6 3.7043 -0.8469 5.4183 20 6 3.2635 -2.2259 4.8857 21 6 2.6991 -1.9244 3.4767 22 6 1.9779 -0.5668 3.6649 23 1 0.9463 -0.6869 3.9958 24 1 -0.3632 0.5138 0.8900 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.9030 -0.5275 -4.4376 28 1 2.9173 -1.1207 1.0285 29 1 4.2178 0.2796 1.9573 30 1 3.4107 1.8729 1.8720 31 1 3.5266 2.1825 4.1562 32 1 4.7989 0.9327 4.0979 33 1 3.5258 -0.7865 6.4919 34 1 4.7611 -0.6848 5.2059 35 1 2.4892 -2.6518 5.5238 36 1 4.1160 -2.9018 4.8187 37 1 1.9924 -2.6962 3.1722 38 1 3.5069 -1.8331 2.7505 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722098302.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:29 Heat of formation + Delta-G solvation = -34.639555 kcal Electronic energy + Delta-G solvation = -16130.086617 eV Core-core repulsion = 13777.471378 eV Total energy + Delta-G solvation = -2352.615239 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.90509 -37.43078 -34.79536 -33.64425 -31.81731 -29.09873 -28.11610 -27.19374 -25.47440 -22.19921 -21.80765 -20.48959 -19.70710 -18.78174 -17.60319 -16.91357 -15.97524 -15.64515 -15.19803 -15.01232 -14.82498 -14.32704 -14.04532 -13.69521 -13.52894 -13.14718 -12.76898 -12.59333 -12.36815 -12.17723 -12.02908 -11.78542 -11.66134 -11.47340 -11.40635 -11.23472 -11.13740 -11.01207 -10.98233 -10.77833 -9.00906 -8.32719 -6.36716 1.28591 1.32752 1.43481 2.29068 3.02554 3.36409 3.63429 3.74656 3.94005 4.23662 4.31952 4.39971 4.46007 4.59203 4.66961 4.69668 4.71473 4.76561 4.85067 4.90268 4.95864 5.02497 5.02899 5.12647 5.17979 5.21331 5.23519 5.39628 5.40659 5.50591 5.51386 5.62372 5.63953 5.66554 6.03768 6.54026 6.68925 6.86884 7.30253 8.83854 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.045354 B = 0.007247 C = 0.006975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.222445 B = 3862.663658 C = 4013.118783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.187 3.813 3 H -0.007 1.007 4 C -0.523 4.523 5 H 0.039 0.961 6 C 0.014 3.986 7 N -0.946 5.946 8 Si 0.952 3.048 9 H -0.266 1.266 10 H -0.297 1.297 11 H -0.253 1.253 12 N -0.670 5.670 13 C 0.083 3.917 14 H 0.064 0.936 15 C -0.149 4.149 16 C -0.105 4.105 17 C -0.089 4.089 18 H 0.084 0.916 19 C -0.113 4.113 20 C -0.124 4.124 21 C -0.103 4.103 22 C -0.077 4.077 23 H 0.080 0.920 24 H 0.054 0.946 25 H 0.029 0.971 26 H 0.050 0.950 27 H 0.266 0.734 28 H 0.335 0.665 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.942 3.705 18.508 18.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.077 3.923 3 H 0.010 0.990 4 C -0.561 4.561 5 H 0.057 0.943 6 C -0.183 4.183 7 N -0.587 5.587 8 Si 0.780 3.220 9 H -0.192 1.192 10 H -0.225 1.225 11 H -0.177 1.177 12 N -0.300 5.300 13 C -0.027 4.027 14 H 0.082 0.918 15 C -0.188 4.188 16 C -0.143 4.143 17 C -0.108 4.108 18 H 0.102 0.898 19 C -0.150 4.150 20 C -0.161 4.161 21 C -0.141 4.141 22 C -0.096 4.096 23 H 0.098 0.902 24 H 0.072 0.928 25 H 0.048 0.952 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.154 0.846 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.326 3.444 18.482 18.803 hybrid contribution 0.397 0.891 -1.284 1.612 sum 0.723 4.335 17.199 17.751 Atomic orbital electron populations 1.21987 0.97561 1.00877 0.98650 1.19341 0.92542 0.92080 0.88308 0.98971 1.21416 1.31299 1.12579 0.90796 0.94284 1.25785 0.97220 0.99960 0.95367 1.70037 1.47613 1.42415 0.98587 0.85796 0.79217 0.79920 0.77088 1.19246 1.22477 1.17718 1.60590 1.32777 1.32354 1.04285 1.22277 0.95804 0.93108 0.91554 0.91760 1.22733 0.97838 1.00157 0.98107 1.21949 0.99818 0.99666 0.92907 1.22001 0.96203 0.96149 0.96434 0.89800 1.22243 0.99198 0.93731 0.99858 1.22387 1.00509 0.97300 0.95930 1.22249 0.98856 0.96417 0.96566 1.22450 0.98911 0.95207 0.92986 0.90195 0.92751 0.95209 0.93105 0.92464 0.84627 0.92914 0.93119 0.91260 0.90975 0.90652 0.91645 0.91239 0.91662 0.92810 0.93169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.83 8.88 71.98 0.64 -5.20 16 2 C 0.19 8.86 2.05 44.17 0.09 8.96 16 3 H -0.01 -0.35 6.88 -2.39 -0.02 -0.37 16 4 C -0.52 -30.14 9.17 25.60 0.23 -29.90 16 5 H 0.04 2.48 7.86 -2.92 -0.02 2.46 16 6 C 0.01 0.84 5.45 84.65 0.46 1.31 16 7 N -0.95 -59.60 13.96 21.45 0.30 -59.30 16 8 Si 0.95 45.81 24.37 68.60 1.67 47.48 16 9 H -0.27 -12.24 6.87 99.48 0.68 -11.55 16 10 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 11 H -0.25 -11.42 6.53 99.48 0.65 -10.77 16 12 N -0.67 -27.12 5.25 -470.04 -2.47 -29.59 16 13 C 0.08 2.71 2.69 45.56 0.12 2.83 16 14 H 0.06 2.17 7.19 -2.39 -0.02 2.15 16 15 C -0.15 -4.46 6.07 31.13 0.19 -4.27 16 16 C -0.11 -2.38 6.42 30.89 0.20 -2.18 16 17 C -0.09 -1.90 3.61 -10.03 -0.04 -1.93 16 18 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 19 C -0.11 -2.10 6.43 31.20 0.20 -1.90 16 20 C -0.12 -2.58 6.84 31.62 0.22 -2.36 16 21 C -0.10 -2.80 5.37 31.83 0.17 -2.63 16 22 C -0.08 -2.04 3.78 -9.31 -0.04 -2.08 16 23 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 24 H 0.05 2.04 7.48 -2.39 -0.02 2.02 16 25 H 0.03 1.33 3.27 -2.39 -0.01 1.32 16 26 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 28 H 0.33 14.11 6.28 -89.69 -0.56 13.55 16 29 H 0.05 1.70 7.48 -2.39 -0.02 1.68 16 30 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.07 1.49 7.06 -2.39 -0.02 1.47 16 33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.06 1.19 7.07 -2.38 -0.02 1.18 16 35 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.05 1.52 6.35 -2.38 -0.02 1.50 16 Total: -1.00 -62.86 279.36 2.34 -60.52 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.38 Total: 20.25 kcal Atomic # 6 Polarization: -41.81 SS G_CDS: 2.45 Total: -39.36 kcal Atomic # 7 Polarization: -86.73 SS G_CDS: -2.17 Total: -88.89 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.67 Total: 47.48 kcal Total: -62.86 2.34 -60.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722098302.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.882 kcal (2) G-P(sol) polarization free energy of solvation -62.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds