Wall clock time and date at job start Mon Mar 30 2020 03:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 110.99877 * 2 1 4 4 C 1.50700 * 109.47291 * 293.95520 * 3 2 1 5 5 H 1.08003 * 119.99611 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00291 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99965 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00197 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47061 * 89.99901 * 8 6 4 10 10 H 1.48494 * 109.47385 * 210.00323 * 8 6 4 11 11 H 1.48504 * 109.47220 * 330.00488 * 8 6 4 12 12 C 1.46899 * 111.00117 * 123.95113 * 2 1 3 13 13 H 1.09002 * 109.47586 * 296.04732 * 12 2 1 14 14 C 1.52944 * 109.47401 * 176.03496 * 12 2 1 15 15 C 1.52960 * 109.81648 * 177.01839 * 14 12 2 16 16 C 1.53179 * 109.44569 * 62.98733 * 15 14 12 17 17 C 1.53150 * 108.88503 * 303.42729 * 16 15 14 18 18 C 1.52812 * 117.75463 * 199.63702 * 17 16 15 19 19 C 1.52853 * 117.67931 * 268.52112 * 17 16 15 20 20 C 1.53148 * 115.00306 * 53.94500 * 17 16 15 21 21 H 1.09006 * 109.47127 * 296.04635 * 1 2 3 22 22 H 1.08996 * 109.47048 * 56.04434 * 1 2 3 23 23 H 1.09003 * 109.47188 * 176.04928 * 1 2 3 24 24 H 1.08998 * 109.47222 * 53.95173 * 3 2 1 25 25 H 1.08999 * 109.47221 * 173.95422 * 3 2 1 26 26 H 0.97001 * 119.99710 * 180.02562 * 7 6 4 27 27 H 1.09000 * 109.41836 * 297.12515 * 14 12 2 28 28 H 1.09007 * 109.41176 * 56.91240 * 14 12 2 29 29 H 1.09004 * 109.47312 * 302.99515 * 15 14 12 30 30 H 1.08991 * 109.48126 * 182.98534 * 15 14 12 31 31 H 1.09004 * 109.56664 * 183.60921 * 16 15 14 32 32 H 1.08995 * 109.67167 * 63.30924 * 16 15 14 33 33 H 1.09001 * 117.49761 * 215.11482 * 18 17 16 34 34 H 1.08995 * 117.49773 * 0.14293 * 18 17 16 35 35 H 1.08997 * 117.50538 * 359.71446 * 19 17 16 36 36 H 1.09001 * 117.50428 * 144.74489 * 19 17 16 37 37 H 1.09003 * 109.56931 * 186.23523 * 20 17 16 38 38 H 1.08997 * 109.57208 * 65.87813 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0746 1.5113 -2.0488 6 6 2.0276 3.3492 -1.5289 7 7 2.7136 4.0013 -0.6158 8 14 1.5837 4.1865 -3.1386 9 1 0.2717 4.8673 -2.9971 10 1 2.6264 5.1871 -3.4801 11 1 1.5002 3.1705 -4.2185 12 6 1.9955 -0.7659 1.1376 13 1 1.7044 -0.2799 2.0688 14 6 3.5211 -0.8265 1.0491 15 6 4.0826 -1.5587 2.2691 16 6 3.5798 -3.0056 2.2715 17 6 2.0486 -2.9984 2.2437 18 6 1.3227 -4.2650 2.6952 19 6 1.3140 -3.0192 3.5840 20 6 1.4257 -2.1874 1.1037 21 1 -0.3634 0.4513 0.9233 22 1 -0.3633 0.5740 -0.8524 23 1 -0.3634 -1.0252 -0.0708 24 1 1.5611 1.9274 0.8309 25 1 3.0797 1.3445 0.1082 26 1 2.9881 4.9174 -0.7778 27 1 3.8107 -1.3581 0.1427 28 1 3.9228 0.1864 1.0179 29 1 3.7510 -1.0572 3.1783 30 1 5.1717 -1.5525 2.2273 31 1 3.9262 -3.5110 3.1731 32 1 3.9584 -3.5271 1.3924 33 1 0.3963 -4.5240 2.1825 34 1 1.9342 -5.1082 3.0163 35 1 1.9199 -3.0430 4.4898 36 1 0.3822 -2.4583 3.6561 37 1 0.3438 -2.1502 1.2309 38 1 1.6669 -2.6547 0.1490 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723421786.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:10 Heat of formation + Delta-G solvation = 11.339842 kcal Electronic energy + Delta-G solvation = -15898.496995 eV Core-core repulsion = 13547.875572 eV Total energy + Delta-G solvation = -2350.621423 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.39745 -36.50003 -33.66518 -32.43676 -29.59391 -27.78974 -26.56967 -24.73395 -22.44573 -22.06552 -21.28330 -19.38996 -18.39721 -16.41878 -15.40066 -15.16976 -14.63838 -14.11721 -13.94110 -13.49689 -13.27052 -12.78479 -12.63416 -12.39328 -11.88990 -11.52971 -11.32836 -11.25715 -10.96190 -10.90491 -10.74611 -10.64991 -10.41612 -10.24858 -10.03451 -9.87231 -9.60567 -9.15069 -9.09341 -8.37473 -7.14363 -5.98857 -3.99425 3.33813 3.39897 3.44536 3.85634 4.44892 4.68787 4.86890 4.90847 5.02081 5.32639 5.36364 5.45097 5.48313 5.66673 5.68494 5.75765 5.80143 5.93958 6.00819 6.08580 6.16371 6.17196 6.20407 6.31435 6.35462 6.46681 6.52308 6.61049 6.74632 6.82721 6.90195 7.40146 7.42100 7.86028 8.17421 8.28709 8.63281 9.08466 9.64298 11.12086 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.049139 B = 0.006366 C = 0.005951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.670935 B = 4397.101011 C = 4703.822613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.538 5.538 3 C 0.189 3.811 4 C -0.505 4.505 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.091 3.909 13 H 0.027 0.973 14 C -0.113 4.113 15 C -0.114 4.114 16 C -0.079 4.079 17 C -0.114 4.114 18 C -0.179 4.179 19 C -0.177 4.177 20 C -0.073 4.073 21 H 0.008 0.992 22 H 0.072 0.928 23 H 0.046 0.954 24 H -0.013 1.013 25 H 0.038 0.962 26 H 0.260 0.740 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.059 0.941 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.596 -13.305 6.615 14.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.263 5.263 3 C 0.064 3.936 4 C -0.544 4.544 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.198 1.198 12 C -0.018 4.018 13 H 0.045 0.955 14 C -0.151 4.151 15 C -0.152 4.152 16 C -0.116 4.116 17 C -0.114 4.114 18 C -0.216 4.216 19 C -0.214 4.214 20 C -0.111 4.111 21 H 0.026 0.974 22 H 0.091 0.909 23 H 0.065 0.935 24 H 0.005 0.995 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.078 0.922 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.351 -13.344 6.205 14.720 hybrid contribution -0.550 1.018 0.005 1.157 sum -0.901 -12.326 6.211 13.832 Atomic orbital electron populations 1.22233 0.89270 0.99441 1.00299 1.62154 1.06538 1.17667 1.39922 1.19808 0.95893 0.81611 0.96328 1.21192 1.34535 0.96875 1.01760 0.91950 1.24985 0.95378 0.97381 0.96934 1.69964 1.38505 1.11384 1.34121 0.86519 0.77945 0.79226 0.83855 1.20815 1.21287 1.19793 1.21464 0.94712 0.92955 0.92660 0.95530 1.21595 0.94868 1.01245 0.97398 1.21513 0.99602 0.95051 0.99053 1.21140 0.92012 0.97259 1.01223 1.21529 0.94441 0.99416 0.96063 1.22959 1.02484 0.91812 1.04386 1.22989 1.02486 1.01524 0.94407 1.21241 0.98554 0.94659 0.96624 0.97387 0.90888 0.93512 0.99481 0.94461 0.93006 0.91567 0.90878 0.92320 0.92136 0.92513 0.91584 0.89108 0.89216 0.89225 0.89131 0.92240 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 8.93 60.06 0.54 1.27 16 2 N -0.54 -11.92 4.62 -236.25 -1.09 -13.01 16 3 C 0.19 5.00 4.54 -4.97 -0.02 4.98 16 4 C -0.50 -14.41 8.46 -34.44 -0.29 -14.70 16 5 H 0.06 1.76 7.12 -52.48 -0.37 1.39 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -27.04 13.29 55.43 0.74 -26.31 16 8 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.09 1.69 1.95 -67.65 -0.13 1.56 16 13 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 14 C -0.11 -1.99 4.99 -26.78 -0.13 -2.13 16 15 C -0.11 -1.60 5.93 -26.66 -0.16 -1.76 16 16 C -0.08 -0.98 5.67 -26.56 -0.15 -1.13 16 17 C -0.11 -1.49 1.97 -154.53 -0.31 -1.79 16 18 C -0.18 -2.00 9.99 -26.81 -0.27 -2.26 16 19 C -0.18 -2.11 9.93 -26.79 -0.27 -2.37 16 20 C -0.07 -1.13 4.46 -26.56 -0.12 -1.25 16 21 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 22 H 0.07 1.57 6.76 -51.93 -0.35 1.21 16 23 H 0.05 0.80 6.32 -51.93 -0.33 0.48 16 24 H -0.01 -0.36 8.12 -51.93 -0.42 -0.78 16 25 H 0.04 1.04 5.77 -51.93 -0.30 0.74 16 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.07 1.46 6.04 -51.92 -0.31 1.15 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 0.90 6.52 -51.93 -0.34 0.56 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 293.66 15.07 4.43 4.43 Total: -1.00 -29.54 293.66 -8.99 -38.53 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -6.63 Total: -2.36 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -1.41 Total: -18.13 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: -0.36 Total: -39.32 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.54 -8.99 -38.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723421786.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.868 kcal (2) G-P(sol) polarization free energy of solvation -29.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds