Wall clock time and date at job start Mon Mar 30 2020 02:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.51268 * 120.84464 * 2 1 4 4 C 1.53230 * 108.53600 * 231.32364 * 3 2 1 5 5 C 1.52959 * 109.40680 * 305.37678 * 4 3 2 6 6 C 1.52994 * 109.41301 * 183.70462 * 5 4 3 7 7 N 1.46906 * 109.46817 * 174.85841 * 6 5 4 8 8 C 1.46903 * 110.99973 * 179.97438 * 7 6 5 9 9 H 1.09003 * 109.46808 * 325.00209 * 8 7 6 10 10 C 1.53000 * 109.47120 * 84.99803 * 8 7 6 11 11 C 1.50694 * 109.47066 * 204.99831 * 8 7 6 12 12 H 1.08000 * 120.00563 * 359.97438 * 11 8 7 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 8 7 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 8 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 C 1.52954 * 109.75969 * 63.62960 * 5 4 3 20 20 C 1.51257 * 120.85126 * 179.97438 * 2 1 3 21 21 H 1.07996 * 120.00572 * 0.02562 * 1 2 3 22 22 H 1.08007 * 119.99412 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.62910 * 111.61031 * 3 2 1 24 24 H 1.09002 * 109.62769 * 351.03918 * 3 2 1 25 25 H 1.09002 * 109.48232 * 185.38954 * 4 3 2 26 26 H 1.09005 * 109.48102 * 65.35221 * 4 3 2 27 27 H 1.08999 * 109.40884 * 303.55958 * 5 4 3 28 28 H 1.08993 * 109.47410 * 54.85916 * 6 5 4 29 29 H 1.08998 * 109.47442 * 294.85190 * 6 5 4 30 30 H 1.00894 * 111.00400 * 56.04110 * 7 6 5 31 31 H 1.08997 * 109.47359 * 180.02562 * 10 8 7 32 32 H 1.09007 * 109.47356 * 300.00024 * 10 8 7 33 33 H 1.09000 * 109.47156 * 59.99749 * 10 8 7 34 34 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 35 35 H 1.09003 * 109.48399 * 56.34762 * 19 5 4 36 36 H 1.09006 * 109.47960 * 176.39026 * 19 5 4 37 37 H 1.09002 * 109.62525 * 248.38652 * 20 2 1 38 38 H 1.09001 * 109.63265 * 8.76943 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0856 1.2987 0.0000 4 6 3.1148 1.2515 -1.1342 5 6 3.9811 0.0000 -0.9826 6 6 5.0674 -0.0001 -2.0599 7 7 5.9741 -1.1351 -1.8409 8 6 7.0323 -1.1677 -2.8593 9 1 6.6299 -0.8242 -3.8124 10 6 8.1808 -0.2522 -2.4309 11 6 7.5427 -2.5777 -3.0084 12 1 7.1233 -3.3704 -2.4065 13 6 8.5459 -2.8558 -3.9125 14 7 9.0570 -1.8905 -4.6451 15 14 9.1791 -4.6035 -4.0967 16 1 10.2487 -4.6365 -5.1263 17 1 9.7268 -5.0710 -2.7981 18 1 8.0647 -5.4924 -4.5127 19 6 3.1139 -1.2507 -1.1348 20 6 2.0857 -1.2985 0.0006 21 1 -0.5401 0.9352 -0.0004 22 1 -0.5399 -0.9354 -0.0004 23 1 2.5979 1.4192 0.9544 24 1 1.4026 2.1331 -0.1599 25 1 3.7465 2.1386 -1.0891 26 1 2.5977 1.2216 -2.0933 27 1 4.4477 -0.0004 0.0025 28 1 5.6316 0.9309 -2.0071 29 1 4.6046 -0.0893 -3.0427 30 1 5.4650 -2.0060 -1.8208 31 1 8.9658 -0.2760 -3.1867 32 1 7.8116 0.7678 -2.3231 33 1 8.5830 -0.5956 -1.4778 34 1 9.7630 -2.0861 -5.2809 35 1 2.5968 -1.2201 -2.0939 36 1 3.7450 -2.1384 -1.0900 37 1 2.5981 -1.4185 0.9551 38 1 1.4024 -2.1333 -0.1556 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724441407.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:24 Heat of formation + Delta-G solvation = -12.403324 kcal Electronic energy + Delta-G solvation = -15424.777440 eV Core-core repulsion = 13073.126436 eV Total energy + Delta-G solvation = -2351.651004 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.78770 -35.84682 -33.46569 -31.73343 -30.95567 -28.69025 -26.29462 -25.11835 -23.06498 -22.58915 -20.08423 -19.64332 -18.29920 -16.51129 -15.03866 -14.82044 -14.78146 -14.44828 -13.90659 -13.80197 -13.20356 -12.86978 -12.72204 -12.21599 -12.13990 -11.74564 -11.38406 -11.13821 -10.92825 -10.87397 -10.76665 -10.54911 -10.25000 -10.13309 -10.08148 -9.89932 -9.71044 -9.00414 -8.77848 -8.44608 -7.20084 -6.00279 -4.06727 2.24629 3.32255 3.36573 3.39396 4.41689 4.67027 4.82467 4.98959 5.20448 5.24139 5.31138 5.42331 5.51543 5.58147 5.61493 5.77976 5.83794 5.93935 5.99331 6.10820 6.19543 6.26682 6.30119 6.40360 6.54757 6.70575 6.72329 6.90694 6.93404 7.17997 7.28015 7.55495 7.80439 7.93990 8.31162 8.44398 8.72864 9.04549 9.59094 11.06041 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.047938 B = 0.005439 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.947802 B = 5146.862143 C = 5565.717564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.109 4.109 3 C -0.086 4.086 4 C -0.110 4.110 5 C -0.085 4.085 6 C 0.065 3.935 7 N -0.689 5.689 8 C 0.210 3.790 9 H -0.001 1.001 10 C -0.123 4.123 11 C -0.518 4.518 12 H 0.058 0.942 13 C 0.062 3.938 14 N -0.891 5.891 15 Si 0.897 3.103 16 H -0.287 1.287 17 H -0.276 1.276 18 H -0.278 1.278 19 C -0.112 4.112 20 C -0.086 4.086 21 H 0.093 0.907 22 H 0.094 0.906 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.016 0.984 30 H 0.329 0.671 31 H 0.079 0.921 32 H 0.003 0.997 33 H 0.031 0.969 34 H 0.261 0.739 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.142 4.376 7.326 15.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.109 4.109 3 C -0.123 4.123 4 C -0.148 4.148 5 C -0.103 4.103 6 C -0.065 4.065 7 N -0.321 5.321 8 C 0.103 3.897 9 H 0.017 0.983 10 C -0.182 4.182 11 C -0.557 4.557 12 H 0.076 0.924 13 C -0.140 4.140 14 N -0.529 5.529 15 Si 0.725 3.275 16 H -0.213 1.213 17 H -0.202 1.202 18 H -0.204 1.204 19 C -0.149 4.149 20 C -0.123 4.123 21 H 0.112 0.888 22 H 0.113 0.887 23 H 0.090 0.910 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.035 0.965 30 H 0.147 0.853 31 H 0.098 0.902 32 H 0.022 0.978 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.591 4.741 7.622 15.463 hybrid contribution -0.133 -1.193 -0.968 1.543 sum -12.724 3.548 6.654 14.791 Atomic orbital electron populations 1.23553 0.95037 1.01438 1.04840 1.22077 0.94974 0.96261 0.97539 1.20824 0.97570 0.94385 0.99521 1.21574 0.96848 0.98332 0.98072 1.21160 0.94871 0.93721 1.00586 1.21922 0.92937 0.96553 0.95080 1.60772 1.13924 1.04572 1.52851 1.19092 0.87777 0.95508 0.87339 0.98311 1.21705 1.00836 0.94840 1.00800 1.21237 1.20018 0.93270 1.21153 0.92355 1.24924 0.96347 0.97225 0.95512 1.69894 1.27163 1.31543 1.24337 0.86588 0.78458 0.84712 0.77790 1.21308 1.20193 1.20359 1.21609 0.96716 0.98877 0.97747 1.20835 0.97611 0.94203 0.99692 0.88827 0.88748 0.90955 0.91735 0.91721 0.92128 0.90550 0.91978 0.96546 0.85316 0.90202 0.97783 0.95026 0.92909 0.92328 0.90975 0.90894 0.91701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.20 13.99 29.01 0.41 -1.79 16 2 C -0.11 -1.24 5.35 -100.52 -0.54 -1.78 16 3 C -0.09 -0.94 6.03 -27.49 -0.17 -1.11 16 4 C -0.11 -1.37 5.21 -26.63 -0.14 -1.51 16 5 C -0.08 -1.23 2.29 -90.67 -0.21 -1.44 16 6 C 0.07 1.19 4.94 -3.82 -0.02 1.17 16 7 N -0.69 -14.94 6.30 -107.95 -0.68 -15.62 16 8 C 0.21 5.45 2.60 -68.87 -0.18 5.27 16 9 H 0.00 -0.02 7.80 -51.93 -0.40 -0.43 16 10 C -0.12 -3.15 9.19 37.16 0.34 -2.81 16 11 C -0.52 -14.42 8.59 -34.44 -0.30 -14.72 16 12 H 0.06 1.59 7.62 -52.49 -0.40 1.19 16 13 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 14 N -0.89 -25.77 11.32 55.43 0.63 -25.14 16 15 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 16 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 19 C -0.11 -1.54 5.06 -26.63 -0.13 -1.67 16 20 C -0.09 -1.02 6.04 -27.48 -0.17 -1.19 16 21 H 0.09 0.87 7.92 -52.49 -0.42 0.45 16 22 H 0.09 0.90 7.92 -52.48 -0.42 0.49 16 23 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.63 7.89 -51.93 -0.41 0.22 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.06 1.17 7.44 -51.93 -0.39 0.78 16 29 H 0.02 0.31 8.05 -51.93 -0.42 -0.11 16 30 H 0.33 6.92 6.39 -39.30 -0.25 6.67 16 31 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 32 H 0.00 0.07 7.45 -51.93 -0.39 -0.31 16 33 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 1.06 6.51 -51.93 -0.34 0.72 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.71 7.89 -51.93 -0.41 0.30 16 LS Contribution 297.33 15.07 4.48 4.48 Total: -1.00 -28.39 297.33 -8.43 -36.82 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -6.65 Total: 2.99 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -1.19 Total: -19.94 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: -0.05 Total: -40.76 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.39 -8.43 -36.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724441407.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.413 kcal (2) G-P(sol) polarization free energy of solvation -28.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds