Wall clock time and date at job start Mon Mar 30 2020 02:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.51268 * 120.84464 * 2 1 4 4 C 1.53230 * 108.53600 * 231.32364 * 3 2 1 5 5 C 1.52959 * 109.40680 * 305.37678 * 4 3 2 6 6 C 1.52994 * 109.41301 * 183.70462 * 5 4 3 7 7 N 1.46906 * 109.46817 * 174.85841 * 6 5 4 8 8 C 1.46903 * 110.99973 * 179.97438 * 7 6 5 9 9 H 1.09003 * 109.46808 * 325.00209 * 8 7 6 10 10 C 1.53000 * 109.47120 * 84.99803 * 8 7 6 11 11 C 1.50694 * 109.47066 * 204.99831 * 8 7 6 12 12 H 1.08000 * 120.00563 * 359.97438 * 11 8 7 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 8 7 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 8 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 C 1.52954 * 109.75969 * 63.62960 * 5 4 3 20 20 C 1.51257 * 120.85126 * 179.97438 * 2 1 3 21 21 H 1.07996 * 120.00572 * 0.02562 * 1 2 3 22 22 H 1.08007 * 119.99412 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.62910 * 111.61031 * 3 2 1 24 24 H 1.09002 * 109.62769 * 351.03918 * 3 2 1 25 25 H 1.09002 * 109.48232 * 185.38954 * 4 3 2 26 26 H 1.09005 * 109.48102 * 65.35221 * 4 3 2 27 27 H 1.08999 * 109.40884 * 303.55958 * 5 4 3 28 28 H 1.08993 * 109.47410 * 54.85916 * 6 5 4 29 29 H 1.08998 * 109.47442 * 294.85190 * 6 5 4 30 30 H 1.00894 * 111.00400 * 56.04110 * 7 6 5 31 31 H 1.08997 * 109.47359 * 180.02562 * 10 8 7 32 32 H 1.09007 * 109.47356 * 300.00024 * 10 8 7 33 33 H 1.09000 * 109.47156 * 59.99749 * 10 8 7 34 34 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 35 35 H 1.09003 * 109.48399 * 56.34762 * 19 5 4 36 36 H 1.09006 * 109.47960 * 176.39026 * 19 5 4 37 37 H 1.09002 * 109.62525 * 248.38652 * 20 2 1 38 38 H 1.09001 * 109.63265 * 8.76943 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0856 1.2987 0.0000 4 6 3.1148 1.2515 -1.1342 5 6 3.9811 0.0000 -0.9826 6 6 5.0674 -0.0001 -2.0599 7 7 5.9741 -1.1351 -1.8409 8 6 7.0323 -1.1677 -2.8593 9 1 6.6299 -0.8242 -3.8124 10 6 8.1808 -0.2522 -2.4309 11 6 7.5427 -2.5777 -3.0084 12 1 7.1233 -3.3704 -2.4065 13 6 8.5459 -2.8558 -3.9125 14 7 9.0570 -1.8905 -4.6451 15 14 9.1791 -4.6035 -4.0967 16 1 10.2487 -4.6365 -5.1263 17 1 9.7268 -5.0710 -2.7981 18 1 8.0647 -5.4924 -4.5127 19 6 3.1139 -1.2507 -1.1348 20 6 2.0857 -1.2985 0.0006 21 1 -0.5401 0.9352 -0.0004 22 1 -0.5399 -0.9354 -0.0004 23 1 2.5979 1.4192 0.9544 24 1 1.4026 2.1331 -0.1599 25 1 3.7465 2.1386 -1.0891 26 1 2.5977 1.2216 -2.0933 27 1 4.4477 -0.0004 0.0025 28 1 5.6316 0.9309 -2.0071 29 1 4.6046 -0.0893 -3.0427 30 1 5.4650 -2.0060 -1.8208 31 1 8.9658 -0.2760 -3.1867 32 1 7.8116 0.7678 -2.3231 33 1 8.5830 -0.5956 -1.4778 34 1 9.7630 -2.0861 -5.2809 35 1 2.5968 -1.2201 -2.0939 36 1 3.7450 -2.1384 -1.0900 37 1 2.5981 -1.4185 0.9551 38 1 1.4024 -2.1333 -0.1556 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724441407.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:24 Heat of formation + Delta-G solvation = -28.270855 kcal Electronic energy + Delta-G solvation = -15425.465508 eV Core-core repulsion = 13073.126436 eV Total energy + Delta-G solvation = -2352.339071 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.89119 -37.53858 -35.05993 -33.37400 -31.94997 -30.37538 -27.77212 -27.11040 -24.25887 -23.75793 -21.68378 -21.20187 -19.22569 -18.54860 -16.93642 -16.11856 -15.90212 -15.68207 -15.55435 -14.87170 -14.66453 -14.43773 -14.01326 -13.62588 -13.43418 -13.14929 -12.97602 -12.73519 -12.57977 -12.40552 -12.25782 -12.17755 -11.95176 -11.78135 -11.55090 -11.15114 -10.98506 -10.80677 -10.56980 -9.85001 -9.04206 -8.13546 -6.28311 1.42070 1.42331 1.44508 1.52176 2.41447 3.14696 3.59537 3.75658 3.87020 4.06650 4.19633 4.32425 4.44646 4.54814 4.56922 4.72893 4.75267 4.79393 4.88614 5.00288 5.05910 5.07944 5.09334 5.12266 5.20982 5.21937 5.30566 5.37658 5.45182 5.56106 5.67869 5.82278 5.86077 6.05554 6.21808 6.48307 6.78641 7.01184 7.42288 8.92104 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.047938 B = 0.005439 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.947802 B = 5146.862143 C = 5565.717564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.129 4.129 3 C -0.081 4.081 4 C -0.107 4.107 5 C -0.074 4.074 6 C 0.067 3.933 7 N -0.686 5.686 8 C 0.213 3.787 9 H -0.035 1.035 10 C -0.112 4.112 11 C -0.540 4.540 12 H 0.059 0.941 13 C 0.013 3.987 14 N -0.919 5.919 15 Si 0.964 3.036 16 H -0.283 1.283 17 H -0.270 1.270 18 H -0.270 1.270 19 C -0.110 4.110 20 C -0.081 4.081 21 H 0.107 0.893 22 H 0.102 0.898 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.006 0.994 30 H 0.332 0.668 31 H 0.056 0.944 32 H 0.020 0.980 33 H 0.028 0.972 34 H 0.263 0.737 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.363 4.063 8.272 17.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.129 4.129 3 C -0.118 4.118 4 C -0.145 4.145 5 C -0.093 4.093 6 C -0.063 4.063 7 N -0.318 5.318 8 C 0.104 3.896 9 H -0.017 1.017 10 C -0.171 4.171 11 C -0.578 4.578 12 H 0.077 0.923 13 C -0.187 4.187 14 N -0.558 5.558 15 Si 0.789 3.211 16 H -0.209 1.209 17 H -0.196 1.196 18 H -0.195 1.195 19 C -0.148 4.148 20 C -0.119 4.119 21 H 0.125 0.875 22 H 0.120 0.880 23 H 0.095 0.905 24 H 0.099 0.901 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.025 0.975 30 H 0.150 0.850 31 H 0.075 0.925 32 H 0.039 0.961 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.831 4.434 8.582 16.870 hybrid contribution 0.197 -1.056 -1.272 1.665 sum -13.634 3.378 7.310 15.835 Atomic orbital electron populations 1.23760 0.94719 1.02489 1.02717 1.22101 0.95454 0.95993 0.99384 1.20798 0.97291 0.94887 0.98836 1.21530 0.96991 0.97111 0.98827 1.21058 0.94094 0.95535 0.98635 1.21991 0.93330 0.94837 0.96130 1.60704 1.14217 1.05844 1.50996 1.18926 0.88926 0.94845 0.86858 1.01714 1.21532 1.00066 0.95818 0.99636 1.21565 1.20514 0.94164 1.21552 0.92273 1.25764 0.96459 1.01379 0.95059 1.70026 1.27479 1.33570 1.24718 0.85518 0.77959 0.79676 0.77903 1.20864 1.19554 1.19544 1.21559 0.96934 0.97727 0.98546 1.20779 0.97219 0.95170 0.98690 0.87521 0.88016 0.90550 0.90123 0.91271 0.92418 0.90899 0.92572 0.97533 0.84965 0.92486 0.96077 0.95308 0.92809 0.92868 0.92332 0.90748 0.90761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.56 13.99 67.78 0.95 -2.61 16 2 C -0.13 -2.65 5.35 -16.13 -0.09 -2.73 16 3 C -0.08 -1.58 6.03 30.11 0.18 -1.40 16 4 C -0.11 -2.50 5.21 30.66 0.16 -2.34 16 5 C -0.07 -2.12 2.29 -10.82 -0.02 -2.14 16 6 C 0.07 2.46 4.94 86.30 0.43 2.88 16 7 N -0.69 -30.04 6.30 -495.46 -3.12 -33.16 16 8 C 0.21 11.27 2.60 44.17 0.11 11.38 16 9 H -0.03 -2.03 7.80 -2.39 -0.02 -2.05 16 10 C -0.11 -5.80 9.19 71.98 0.66 -5.13 16 11 C -0.54 -30.32 8.59 25.60 0.22 -30.10 16 12 H 0.06 3.23 7.62 -2.91 -0.02 3.21 16 13 C 0.01 0.71 5.30 84.66 0.45 1.15 16 14 N -0.92 -53.84 11.32 21.45 0.24 -53.60 16 15 Si 0.96 43.86 29.54 68.60 2.03 45.88 16 16 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 17 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 18 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 19 C -0.11 -2.95 5.06 30.66 0.16 -2.79 16 20 C -0.08 -1.79 6.04 30.11 0.18 -1.61 16 21 H 0.11 1.62 7.92 -2.91 -0.02 1.59 16 22 H 0.10 1.65 7.92 -2.91 -0.02 1.63 16 23 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.08 1.33 7.89 -2.39 -0.02 1.31 16 25 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 27 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.06 2.12 7.44 -2.39 -0.02 2.10 16 29 H 0.01 0.25 8.05 -2.39 -0.02 0.23 16 30 H 0.33 14.13 6.39 -89.70 -0.57 13.55 16 31 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 32 H 0.02 0.96 7.45 -2.38 -0.02 0.94 16 33 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 35 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.06 1.71 6.51 -2.38 -0.02 1.69 16 37 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.07 1.48 7.89 -2.39 -0.02 1.46 16 Total: -1.00 -60.04 297.33 2.97 -57.07 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: 0.43 Total: 19.24 kcal Atomic # 6 Polarization: -38.83 SS G_CDS: 3.39 Total: -35.44 kcal Atomic # 7 Polarization: -83.87 SS G_CDS: -2.88 Total: -86.75 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -60.04 2.97 -57.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724441407.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.801 kcal (2) G-P(sol) polarization free energy of solvation -60.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds