Wall clock time and date at job start Mon Mar 30 2020 02:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46933 * 2 1 4 4 C 1.50697 * 109.47363 * 120.00328 * 2 1 3 5 5 H 1.07998 * 120.00234 * 114.59313 * 4 2 1 6 6 C 1.37879 * 119.99647 * 294.59307 * 4 2 1 7 7 N 1.31512 * 120.00056 * 0.02562 * 6 4 2 8 8 Si 1.86808 * 119.99779 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46781 * 90.00133 * 8 6 4 10 10 H 1.48503 * 109.47033 * 210.00526 * 8 6 4 11 11 H 1.48496 * 109.46955 * 330.00196 * 8 6 4 12 12 N 1.46908 * 109.46923 * 240.00268 * 2 1 3 13 13 C 1.46845 * 110.99563 * 170.71294 * 12 2 1 14 14 C 1.53045 * 109.52133 * 185.83568 * 13 12 2 15 15 C 1.53114 * 109.27902 * 300.82678 * 14 13 12 16 16 C 1.52995 * 109.52380 * 177.55959 * 15 14 13 17 17 C 1.52997 * 117.50270 * 180.02562 * 16 15 14 18 18 C 1.53000 * 60.00073 * 252.50465 * 17 16 15 19 19 C 1.53115 * 109.16347 * 57.65106 * 15 14 13 20 20 C 1.46843 * 110.99815 * 294.92250 * 12 2 1 21 21 H 1.08999 * 109.46626 * 299.99897 * 1 2 3 22 22 H 1.08998 * 109.46972 * 59.99516 * 1 2 3 23 23 H 1.09002 * 109.46933 * 179.97438 * 1 2 3 24 24 H 0.97006 * 119.99847 * 179.97438 * 7 6 4 25 25 H 1.08999 * 109.46346 * 65.82494 * 13 12 2 26 26 H 1.09002 * 109.46850 * 305.85702 * 13 12 2 27 27 H 1.08995 * 109.50105 * 180.87759 * 14 13 12 28 28 H 1.08997 * 109.49746 * 60.76552 * 14 13 12 29 29 H 1.09000 * 109.52009 * 297.68359 * 15 14 13 30 30 H 1.09005 * 115.55916 * 325.68693 * 16 15 14 31 31 H 1.08999 * 117.50289 * 145.01849 * 17 16 15 32 32 H 1.09003 * 117.49806 * 359.97438 * 17 16 15 33 33 H 1.09008 * 117.50135 * 107.48137 * 18 17 16 34 34 H 1.08994 * 117.50097 * 252.48754 * 18 17 16 35 35 H 1.08992 * 109.50414 * 62.28533 * 19 15 14 36 36 H 1.08998 * 109.50624 * 182.40700 * 19 15 14 37 37 H 1.08995 * 109.46568 * 294.17746 * 20 12 2 38 38 H 1.09003 * 109.46322 * 54.14509 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.5794 -1.6366 1.1337 6 6 1.7937 -0.1780 2.4796 7 7 1.1272 0.9496 2.5974 8 14 2.4158 -1.0590 4.0049 9 1 3.7812 -0.5761 4.3331 10 1 1.5048 -0.7799 5.1439 11 1 2.4559 -2.5214 3.7500 12 7 2.0197 -0.6925 -1.1995 13 6 3.4707 -0.5234 -1.3492 14 6 3.9218 -1.1311 -2.6795 15 6 3.5568 -2.6178 -2.7057 16 6 3.9505 -3.2172 -4.0572 17 6 3.6647 -4.7034 -4.2812 18 6 5.1028 -4.2235 -4.0752 19 6 2.0471 -2.7685 -2.4994 20 6 1.6504 -2.1135 -1.1744 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 0.9589 1.3240 3.4763 25 1 3.9815 -1.0266 -0.5283 26 1 3.7163 0.5384 -1.3331 27 1 5.0010 -1.0193 -2.7831 28 1 3.4217 -0.6190 -3.5015 29 1 4.0880 -3.1374 -1.9082 30 1 3.8505 -2.5510 -4.9142 31 1 3.3772 -5.0150 -5.2853 32 1 3.1966 -5.2544 -3.4655 33 1 5.5805 -4.4586 -3.1239 34 1 5.7614 -4.2196 -4.9436 35 1 1.5176 -2.2823 -3.3186 36 1 1.7870 -3.8267 -2.4744 37 1 2.1698 -2.6093 -0.3543 38 1 0.5738 -2.2065 -1.0312 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724835174.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:58 Heat of formation + Delta-G solvation = 10.127151 kcal Electronic energy + Delta-G solvation = -15999.356561 eV Core-core repulsion = 13648.682553 eV Total energy + Delta-G solvation = -2350.674009 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.92992 -36.81800 -33.73730 -31.59870 -30.17209 -28.37417 -25.10043 -24.06055 -22.83920 -21.84667 -20.49381 -19.66908 -19.02312 -16.29327 -15.62323 -15.03236 -14.44058 -14.14179 -13.85807 -13.24315 -13.14991 -12.72186 -12.54476 -11.95821 -11.56462 -11.35345 -11.25819 -11.01003 -10.84315 -10.68344 -10.50563 -10.46091 -10.35519 -10.06678 -9.94013 -9.85231 -9.47107 -9.24176 -9.09923 -8.37398 -7.05003 -5.97301 -4.08799 3.27554 3.34782 3.37608 3.89042 4.41711 4.73207 5.01288 5.02423 5.13438 5.29371 5.32128 5.57821 5.63682 5.67625 5.77758 5.93466 5.97801 6.14971 6.18046 6.23456 6.25632 6.43198 6.50238 6.59186 6.61648 6.76853 6.83394 6.99310 7.02383 7.10675 7.25560 7.59947 7.74458 7.99063 8.21205 8.37995 8.52087 9.02431 9.58636 11.04274 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.036917 B = 0.007185 C = 0.006699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.282518 B = 3896.193948 C = 4178.767555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.205 3.795 3 H 0.040 0.960 4 C -0.541 4.541 5 H 0.056 0.944 6 C 0.067 3.933 7 N -0.888 5.888 8 Si 0.886 3.114 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.537 5.537 13 C 0.064 3.936 14 C -0.106 4.106 15 C -0.056 4.056 16 C -0.139 4.139 17 C -0.183 4.183 18 C -0.185 4.185 19 C -0.107 4.107 20 C 0.061 3.939 21 H 0.073 0.927 22 H 0.016 0.984 23 H 0.027 0.973 24 H 0.261 0.739 25 H 0.033 0.967 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.035 0.965 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.379 -7.159 -10.654 13.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.099 3.901 3 H 0.058 0.942 4 C -0.580 4.580 5 H 0.074 0.926 6 C -0.135 4.135 7 N -0.526 5.526 8 Si 0.714 3.286 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.261 5.261 13 C -0.065 4.065 14 C -0.144 4.144 15 C -0.075 4.075 16 C -0.157 4.157 17 C -0.220 4.220 18 C -0.222 4.222 19 C -0.145 4.145 20 C -0.068 4.068 21 H 0.092 0.908 22 H 0.035 0.965 23 H 0.046 0.954 24 H 0.070 0.930 25 H 0.051 0.949 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.053 0.947 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.073 -6.804 -10.917 13.494 hybrid contribution 0.762 -0.862 1.704 2.056 sum 4.835 -7.667 -9.213 12.924 Atomic orbital electron populations 1.21730 0.98038 0.98885 0.99691 1.19268 0.92085 0.94287 0.84479 0.94168 1.21736 1.35666 1.08672 0.91930 0.92572 1.24921 0.94941 0.94802 0.98828 1.69917 1.40158 1.18945 1.23590 0.86701 0.78727 0.80100 0.83109 1.20754 1.21177 1.20075 1.62416 1.11277 1.10894 1.41524 1.21821 0.90038 0.99732 0.94865 1.21620 0.99400 0.94457 0.98912 1.20784 0.96717 0.96189 0.93789 1.22408 1.02197 0.91546 0.99554 1.22900 0.98863 0.97847 1.02342 1.22988 0.91388 1.05113 1.02741 1.21639 0.94669 0.99206 0.98959 1.21908 1.00455 0.89775 0.94628 0.90848 0.96511 0.95407 0.92954 0.94850 0.91953 0.92688 0.91848 0.91858 0.88144 0.89307 0.88894 0.89045 0.89365 0.91887 0.92834 0.94687 0.91403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.93 37.16 0.33 -2.73 16 2 C 0.21 5.19 2.22 -68.86 -0.15 5.03 16 3 H 0.04 1.13 8.00 -51.93 -0.42 0.71 16 4 C -0.54 -14.66 7.17 -34.44 -0.25 -14.91 16 5 H 0.06 1.54 5.85 -52.49 -0.31 1.23 16 6 C 0.07 1.86 5.33 -17.82 -0.09 1.77 16 7 N -0.89 -25.38 11.73 55.43 0.65 -24.73 16 8 Si 0.89 21.36 29.54 -169.99 -5.02 16.33 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.54 -11.61 4.61 -228.07 -1.05 -12.66 16 13 C 0.06 1.27 5.18 -3.83 -0.02 1.25 16 14 C -0.11 -1.68 5.36 -26.65 -0.14 -1.82 16 15 C -0.06 -0.84 2.41 -90.50 -0.22 -1.06 16 16 C -0.14 -1.73 5.15 -90.62 -0.47 -2.19 16 17 C -0.18 -2.04 9.77 -26.73 -0.26 -2.30 16 18 C -0.19 -2.06 10.18 -26.73 -0.27 -2.33 16 19 C -0.11 -1.71 5.18 -26.65 -0.14 -1.85 16 20 C 0.06 1.21 4.79 -3.83 -0.02 1.19 16 21 H 0.07 1.95 6.51 -51.93 -0.34 1.61 16 22 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 23 H 0.03 0.64 6.41 -51.93 -0.33 0.31 16 24 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.03 0.72 7.36 -51.93 -0.38 0.33 16 26 H 0.06 1.25 8.02 -51.93 -0.42 0.83 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.06 1.00 7.90 -51.93 -0.41 0.59 16 30 H 0.10 1.21 8.11 -51.93 -0.42 0.79 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.09 1.06 7.66 -51.93 -0.40 0.66 16 33 H 0.09 1.03 8.05 -51.92 -0.42 0.61 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.05 0.78 7.41 -51.93 -0.38 0.39 16 37 H 0.03 0.76 6.32 -51.93 -0.33 0.43 16 38 H 0.07 1.39 6.18 -51.93 -0.32 1.07 16 LS Contribution 289.82 15.07 4.37 4.37 Total: -1.00 -27.63 289.82 -9.30 -36.93 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -6.54 Total: -0.30 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: -1.70 Total: -19.94 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: -0.40 Total: -37.39 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.63 -9.30 -36.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724835174.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.059 kcal (2) G-P(sol) polarization free energy of solvation -27.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds