Wall clock time and date at job start Mon Mar 30 2020 03:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36943 * 119.99949 * 2 1 4 4 H 1.07997 * 119.99656 * 203.29938 * 3 2 1 5 5 C 1.38808 * 120.00049 * 23.29412 * 3 2 1 6 6 N 1.31620 * 119.99868 * 11.64212 * 5 3 2 7 7 Si 1.86802 * 120.00016 * 191.64230 * 5 3 2 8 8 H 1.48492 * 109.47312 * 60.00080 * 7 5 3 9 9 H 1.48506 * 109.46738 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46925 * 299.99737 * 7 5 3 11 11 C 1.46500 * 120.00246 * 179.97438 * 2 1 3 12 12 H 1.09001 * 109.47184 * 179.97438 * 11 2 1 13 13 C 1.52997 * 109.47141 * 300.00086 * 11 2 1 14 14 C 1.52998 * 109.47357 * 180.02562 * 13 11 2 15 15 C 1.53009 * 109.46924 * 299.99951 * 14 13 11 16 16 C 1.52997 * 109.47064 * 59.99869 * 15 14 13 17 17 C 1.52997 * 109.46948 * 59.99758 * 11 2 1 18 18 H 1.08992 * 109.47433 * 299.99956 * 17 11 2 19 19 C 1.53004 * 109.47311 * 60.00465 * 17 11 2 20 20 C 1.53004 * 117.49708 * 248.75144 * 19 17 11 21 21 C 1.52996 * 117.50263 * 180.08649 * 19 17 11 22 22 H 1.09006 * 109.47190 * 274.08175 * 1 2 3 23 23 H 1.08998 * 109.47532 * 34.08038 * 1 2 3 24 24 H 1.08998 * 109.47320 * 154.08729 * 1 2 3 25 25 H 0.96999 * 119.99826 * 179.97438 * 6 5 3 26 26 H 1.09003 * 109.46899 * 299.99921 * 13 11 2 27 27 H 1.09001 * 109.47375 * 59.99758 * 13 11 2 28 28 H 1.09001 * 109.47142 * 59.99534 * 14 13 11 29 29 H 1.09004 * 109.47344 * 179.97438 * 14 13 11 30 30 H 1.09001 * 109.46870 * 299.99749 * 15 14 13 31 31 H 1.08989 * 109.46996 * 180.02562 * 15 14 13 32 32 H 1.09003 * 109.47370 * 180.02562 * 16 15 14 33 33 H 1.09001 * 109.47375 * 60.00189 * 16 15 14 34 34 H 1.09007 * 115.54800 * 34.41051 * 19 17 11 35 35 H 1.08998 * 117.49500 * 359.97438 * 20 19 17 36 36 H 1.09000 * 117.50095 * 145.02168 * 20 19 17 37 37 H 1.08997 * 117.49885 * 214.97293 * 21 19 17 38 38 H 1.08999 * 117.49533 * 359.97370 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1636 1.2240 -0.3700 5 6 1.5405 2.3391 0.4754 6 7 0.4030 2.2593 1.1328 7 14 2.3350 4.0041 0.1821 8 1 2.4622 4.2415 -1.2782 9 1 1.4925 5.0677 0.7855 10 1 3.6822 4.0265 0.8065 11 6 2.1975 -1.2687 0.0006 12 1 3.2691 -1.0695 0.0000 13 6 1.8279 -2.0704 1.2501 14 6 2.5934 -3.3952 1.2511 15 6 2.2244 -4.1983 0.0021 16 6 2.5940 -3.3966 -1.2474 17 6 1.8278 -2.0715 -1.2483 18 1 0.7563 -2.2708 -1.2482 19 6 2.1975 -1.2699 -2.4979 20 6 1.0512 -0.7353 -3.3590 21 6 1.9026 -1.9056 -3.8580 22 1 -0.3634 0.0732 1.0251 23 1 -0.3634 0.8511 -0.5758 24 1 -0.3634 -0.9243 -0.4491 25 1 -0.0225 3.0651 1.4653 26 1 2.0912 -1.4984 2.1399 27 1 0.7563 -2.2697 1.2503 28 1 3.6650 -3.1956 1.2512 29 1 2.3304 -3.9662 2.1416 30 1 1.1528 -4.3979 0.0021 31 1 2.7693 -5.1422 0.0030 32 1 2.3307 -3.9685 -2.1372 33 1 3.6655 -3.1970 -1.2473 34 1 3.0931 -0.6542 -2.4137 35 1 0.0339 -0.9551 -3.0353 36 1 1.1929 0.2317 -3.8416 37 1 2.6039 -1.7078 -4.6686 38 1 1.4457 -2.8951 -3.8625 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829188823.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:13 Heat of formation + Delta-G solvation = 11.412612 kcal Electronic energy + Delta-G solvation = -16478.666815 eV Core-core repulsion = 14128.048548 eV Total energy + Delta-G solvation = -2350.618267 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.34869 -37.23037 -36.35782 -33.15711 -31.21176 -29.89677 -27.97568 -24.98141 -24.18045 -23.14230 -21.89432 -20.96934 -20.23294 -18.64481 -17.14364 -16.53099 -15.73685 -15.63467 -15.13462 -14.81155 -14.45998 -14.34293 -14.02504 -13.61010 -13.11279 -12.77201 -12.73676 -12.49348 -12.42046 -12.37323 -12.09949 -12.03951 -11.79464 -11.74305 -11.39773 -11.23476 -10.96927 -10.79926 -10.55417 -10.38447 -8.63878 -7.75592 -5.21070 1.44776 1.46740 1.52952 2.53365 3.10458 3.36855 3.70571 3.75137 4.03584 4.20647 4.24537 4.26222 4.35173 4.50667 4.63876 4.69121 4.72615 4.82175 4.85584 4.90990 4.93768 5.05905 5.12119 5.18462 5.31465 5.33393 5.35835 5.38430 5.42927 5.45320 5.56009 5.63127 5.72014 5.75355 5.80945 6.40689 7.23213 7.98575 8.43014 9.27314 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.026945 B = 0.010219 C = 0.008466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.912970 B = 2739.311277 C = 3306.539546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.192 3.808 2 N -0.600 5.600 3 C -0.244 4.244 4 H 0.064 0.936 5 C -0.057 4.057 6 N -0.941 5.941 7 Si 0.961 3.039 8 H -0.282 1.282 9 H -0.297 1.297 10 H -0.277 1.277 11 C 0.181 3.819 12 H 0.047 0.953 13 C -0.125 4.125 14 C -0.110 4.110 15 C -0.112 4.112 16 C -0.102 4.102 17 C -0.059 4.059 18 H 0.053 0.947 19 C -0.128 4.128 20 C -0.184 4.184 21 C -0.161 4.161 22 H -0.006 1.006 23 H 0.010 0.990 24 H 0.021 0.979 25 H 0.244 0.756 26 H 0.030 0.970 27 H 0.044 0.956 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.706 -12.627 -6.015 14.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.322 5.322 3 C -0.375 4.375 4 H 0.081 0.919 5 C -0.251 4.251 6 N -0.589 5.589 7 Si 0.790 3.210 8 H -0.208 1.208 9 H -0.223 1.223 10 H -0.203 1.203 11 C 0.075 3.925 12 H 0.065 0.935 13 C -0.164 4.164 14 C -0.148 4.148 15 C -0.150 4.150 16 C -0.140 4.140 17 C -0.079 4.079 18 H 0.071 0.929 19 C -0.147 4.147 20 C -0.221 4.221 21 C -0.198 4.198 22 H 0.012 0.988 23 H 0.029 0.971 24 H 0.039 0.961 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.118 0.882 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.613 -12.485 -5.954 14.297 hybrid contribution -0.046 1.709 0.287 1.734 sum 3.567 -10.776 -5.668 12.687 Atomic orbital electron populations 1.20290 0.83472 0.95039 0.96490 1.43985 1.01480 1.01103 1.85629 1.19417 0.98129 0.86981 1.32973 0.91863 1.25688 0.98729 1.01468 0.99220 1.70225 1.20241 1.27206 1.41257 0.85428 0.77667 0.80293 0.77604 1.20793 1.22312 1.20347 1.20528 0.94500 0.84811 0.92674 0.93493 1.21966 0.99546 0.96594 0.98314 1.21499 0.99801 0.94769 0.98737 1.21514 1.01347 0.98402 0.93703 1.21510 0.99875 0.94245 0.98344 1.21112 0.99041 0.94633 0.93103 0.92896 1.21954 0.99091 1.02072 0.91559 1.22760 0.96134 0.98019 1.05157 1.23024 1.02803 0.97204 0.96736 0.98817 0.97140 0.96075 0.94657 0.95140 0.93757 0.92002 0.91426 0.92392 0.89936 0.90617 0.91984 0.90463 0.90280 0.90637 0.88163 0.87715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.84 8.00 127.77 1.02 10.87 16 2 N -0.60 -30.22 2.40 -702.81 -1.68 -31.90 16 3 C -0.24 -13.64 9.59 84.03 0.81 -12.83 16 4 H 0.06 3.46 7.82 -2.91 -0.02 3.44 16 5 C -0.06 -3.27 5.12 84.86 0.43 -2.83 16 6 N -0.94 -57.39 10.66 21.65 0.23 -57.16 16 7 Si 0.96 46.53 29.57 68.60 2.03 48.56 16 8 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 9 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 10 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 11 C 0.18 7.38 2.02 44.99 0.09 7.47 16 12 H 0.05 2.00 7.87 -2.39 -0.02 1.98 16 13 C -0.12 -4.65 5.20 30.59 0.16 -4.49 16 14 C -0.11 -3.01 5.92 30.60 0.18 -2.83 16 15 C -0.11 -2.60 5.92 30.60 0.18 -2.42 16 16 C -0.10 -2.56 5.05 30.61 0.15 -2.41 16 17 C -0.06 -1.95 1.72 -10.77 -0.02 -1.97 16 18 H 0.05 1.87 6.42 -2.39 -0.02 1.85 16 19 C -0.13 -4.31 4.75 -10.79 -0.05 -4.36 16 20 C -0.18 -6.14 10.18 30.62 0.31 -5.83 16 21 C -0.16 -4.22 9.74 30.62 0.30 -3.92 16 22 H -0.01 -0.37 7.40 -2.38 -0.02 -0.38 16 23 H 0.01 0.56 7.25 -2.39 -0.02 0.54 16 24 H 0.02 0.94 6.43 -2.39 -0.02 0.93 16 25 H 0.24 14.58 8.31 -92.71 -0.77 13.81 16 26 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.04 1.70 7.67 -2.39 -0.02 1.69 16 28 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.08 1.63 7.29 -2.39 -0.02 1.61 16 33 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.08 2.90 8.11 -2.38 -0.02 2.88 16 35 H 0.08 2.73 8.05 -2.39 -0.02 2.72 16 36 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.10 2.37 7.61 -2.39 -0.02 2.35 16 Total: -1.00 -62.65 292.54 5.14 -57.51 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: 0.99 Total: 8.53 kcal Atomic # 6 Polarization: -29.11 SS G_CDS: 3.57 Total: -25.54 kcal Atomic # 7 Polarization: -87.61 SS G_CDS: -1.45 Total: -89.06 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -62.65 5.14 -57.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829188823.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.921 kcal (2) G-P(sol) polarization free energy of solvation -62.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds