Wall clock time and date at job start Mon Mar 30 2020 03:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36940 * 119.99931 * 2 1 4 4 H 1.08000 * 119.99771 * 171.81022 * 3 2 1 5 5 C 1.38809 * 120.00316 * 351.81432 * 3 2 1 6 6 N 1.31619 * 119.99632 * 6.53277 * 5 3 2 7 7 Si 1.86792 * 120.00342 * 186.52912 * 5 3 2 8 8 H 1.48509 * 109.46944 * 60.00107 * 7 5 3 9 9 H 1.48505 * 109.47479 * 179.97438 * 7 5 3 10 10 H 1.48492 * 109.47549 * 300.00112 * 7 5 3 11 11 C 1.46504 * 120.00198 * 180.02562 * 2 1 3 12 12 H 1.09002 * 109.46876 * 177.34500 * 11 2 1 13 13 C 1.52995 * 109.46846 * 57.33891 * 11 2 1 14 14 C 1.53007 * 109.46740 * 180.02562 * 13 11 2 15 15 C 1.52995 * 109.46989 * 60.00304 * 14 13 11 16 16 C 1.52991 * 109.47292 * 299.99780 * 15 14 13 17 17 C 1.53003 * 109.46666 * 297.34048 * 11 2 1 18 18 H 1.09002 * 109.47104 * 60.00592 * 17 11 2 19 19 C 1.52991 * 109.47520 * 299.99852 * 17 11 2 20 20 C 1.52997 * 117.50173 * 242.90234 * 19 17 11 21 21 C 1.53001 * 117.49821 * 174.24491 * 19 17 11 22 22 H 1.09004 * 109.47133 * 184.90346 * 1 2 3 23 23 H 1.09000 * 109.46874 * 304.90306 * 1 2 3 24 24 H 1.08998 * 109.46781 * 64.90023 * 1 2 3 25 25 H 0.97002 * 119.99962 * 180.02562 * 6 5 3 26 26 H 1.09000 * 109.47106 * 60.00732 * 13 11 2 27 27 H 1.08991 * 109.47634 * 300.00482 * 13 11 2 28 28 H 1.09002 * 109.46866 * 299.99951 * 14 13 11 29 29 H 1.08998 * 109.46547 * 180.02562 * 14 13 11 30 30 H 1.09001 * 109.46872 * 59.99975 * 15 14 13 31 31 H 1.08999 * 109.46819 * 179.97438 * 15 14 13 32 32 H 1.09000 * 109.47267 * 179.97438 * 16 15 14 33 33 H 1.09001 * 109.47321 * 299.99920 * 16 15 14 34 34 H 1.09001 * 115.55042 * 28.57389 * 19 17 11 35 35 H 1.09002 * 117.49621 * 0.02562 * 20 19 17 36 36 H 1.09004 * 117.50154 * 145.01653 * 20 19 17 37 37 H 1.09001 * 117.49437 * 214.97855 * 21 19 17 38 38 H 1.09000 * 117.50045 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2214 1.1907 0.1332 5 6 1.4663 2.3820 -0.1712 6 7 0.1506 2.3891 -0.2046 7 14 2.4139 3.9813 -0.3540 8 1 3.2978 3.8996 -1.5446 9 1 1.4590 5.1060 -0.5233 10 1 3.2383 4.2098 0.8598 11 6 2.1976 -1.2687 -0.0006 12 1 3.2683 -1.0700 -0.0481 13 6 1.7784 -2.0990 -1.2153 14 6 2.5430 -3.4244 -1.2156 15 6 2.2237 -4.1975 0.0654 16 6 2.6427 -3.3673 1.2802 17 6 1.8788 -2.0422 1.2805 18 1 0.8081 -2.2409 1.3280 19 6 2.2978 -1.2119 2.4953 20 6 3.3915 -1.7845 3.3991 21 6 1.9386 -1.7547 3.8799 22 1 -0.3633 -1.0239 0.0878 23 1 -0.3633 0.5880 0.8428 24 1 -0.3633 0.4359 -0.9306 25 1 -0.3270 3.2248 -0.3245 26 1 2.0055 -1.5480 -2.1279 27 1 0.7078 -2.2977 -1.1678 28 1 3.6138 -3.2260 -1.2629 29 1 2.2447 -4.0157 -2.0812 30 1 1.1529 -4.3958 0.1127 31 1 2.7680 -5.1419 0.0650 32 1 2.4148 -3.9179 2.1928 33 1 3.7135 -3.1690 1.2329 34 1 2.2742 -0.1310 2.3567 35 1 3.8127 -2.7525 3.1280 36 1 4.0872 -1.0802 3.8554 37 1 1.6790 -1.0308 4.6524 38 1 1.4033 -2.7031 3.9254 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829188827.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:15 Heat of formation + Delta-G solvation = 21.335928 kcal Electronic energy + Delta-G solvation = -16454.428315 eV Core-core repulsion = 14104.240355 eV Total energy + Delta-G solvation = -2350.187960 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.50766 -37.36941 -36.32916 -33.17013 -31.00892 -29.82961 -28.06463 -24.95931 -24.51088 -23.19542 -21.97748 -20.97308 -19.77060 -18.71233 -17.20053 -16.62377 -15.82792 -15.49756 -15.23856 -15.01858 -14.32107 -14.26401 -13.98373 -13.77642 -12.93269 -12.90434 -12.64027 -12.41558 -12.38204 -12.23134 -12.11513 -12.07648 -11.88372 -11.68733 -11.35344 -11.30640 -10.89824 -10.73616 -10.59795 -10.44436 -8.80617 -7.69792 -5.10876 1.44749 1.47128 1.53276 2.52719 3.06595 3.37787 3.67717 3.82096 4.01647 4.15742 4.22344 4.27784 4.32091 4.49629 4.61744 4.66945 4.71687 4.79161 4.84744 4.86553 4.95670 5.01078 5.11243 5.22962 5.32946 5.33917 5.36819 5.41909 5.44814 5.52555 5.58370 5.66570 5.73510 5.77813 5.89848 6.36534 7.23564 7.99909 8.38926 9.28422 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.027112 B = 0.009850 C = 0.008388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.516026 B = 2841.834340 C = 3337.360304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.197 3.803 2 N -0.615 5.615 3 C -0.239 4.239 4 H 0.073 0.927 5 C -0.066 4.066 6 N -0.948 5.948 7 Si 0.965 3.035 8 H -0.280 1.280 9 H -0.297 1.297 10 H -0.280 1.280 11 C 0.184 3.816 12 H 0.049 0.951 13 C -0.126 4.126 14 C -0.109 4.109 15 C -0.113 4.113 16 C -0.105 4.105 17 C -0.058 4.058 18 H 0.049 0.951 19 C -0.152 4.152 20 C -0.173 4.173 21 C -0.180 4.180 22 H 0.015 0.985 23 H 0.010 0.990 24 H 0.004 0.996 25 H 0.241 0.759 26 H 0.038 0.962 27 H 0.047 0.953 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.116 0.884 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.328 -13.383 3.317 14.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.337 5.337 3 C -0.370 4.370 4 H 0.090 0.910 5 C -0.258 4.258 6 N -0.598 5.598 7 Si 0.795 3.205 8 H -0.207 1.207 9 H -0.223 1.223 10 H -0.206 1.206 11 C 0.077 3.923 12 H 0.067 0.933 13 C -0.165 4.165 14 C -0.147 4.147 15 C -0.151 4.151 16 C -0.143 4.143 17 C -0.079 4.079 18 H 0.067 0.933 19 C -0.171 4.171 20 C -0.209 4.209 21 C -0.217 4.217 22 H 0.033 0.967 23 H 0.029 0.971 24 H 0.023 0.977 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.134 0.866 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.229 -13.228 3.299 14.602 hybrid contribution -0.050 1.677 -0.185 1.687 sum 5.179 -11.552 3.115 13.037 Atomic orbital electron populations 1.20484 0.82722 0.93152 0.98374 1.44220 1.02007 1.01305 1.86199 1.19583 0.91693 0.85213 1.40462 0.90950 1.25587 0.96522 1.00790 1.02910 1.70422 1.06278 1.24879 1.58214 0.85348 0.77341 0.79758 0.78099 1.20656 1.22338 1.20613 1.20475 0.94472 0.84481 0.92885 0.93313 1.21985 0.99788 0.96608 0.98145 1.21486 0.99969 0.94759 0.98501 1.21525 1.01351 0.98450 0.93745 1.21643 0.99895 0.94202 0.98572 1.21040 0.98728 0.94526 0.93586 0.93271 1.22201 1.04477 0.98972 0.91442 1.23157 0.91315 1.03252 1.03221 1.22941 0.98892 1.02784 0.97081 0.96665 0.97138 0.97705 0.94919 0.94336 0.93441 0.91848 0.91100 0.92457 0.89865 0.90924 0.91438 0.90925 0.86578 0.89614 0.89868 0.87924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.20 10.38 8.08 127.77 1.03 11.42 16 2 N -0.61 -31.33 2.15 -702.77 -1.51 -32.85 16 3 C -0.24 -13.43 9.14 84.03 0.77 -12.66 16 4 H 0.07 3.94 7.69 -2.91 -0.02 3.92 16 5 C -0.07 -3.79 5.46 84.86 0.46 -3.33 16 6 N -0.95 -57.81 9.47 21.65 0.21 -57.61 16 7 Si 0.97 46.81 29.56 68.60 2.03 48.84 16 8 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 9 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 10 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 11 C 0.18 7.43 1.97 44.99 0.09 7.52 16 12 H 0.05 2.05 7.79 -2.39 -0.02 2.03 16 13 C -0.13 -4.48 5.15 30.59 0.16 -4.32 16 14 C -0.11 -2.83 5.92 30.59 0.18 -2.65 16 15 C -0.11 -2.56 5.92 30.59 0.18 -2.38 16 16 C -0.11 -2.66 3.78 30.58 0.12 -2.54 16 17 C -0.06 -2.01 1.89 -10.81 -0.02 -2.03 16 18 H 0.05 1.83 7.09 -2.39 -0.02 1.81 16 19 C -0.15 -5.49 5.58 -10.80 -0.06 -5.55 16 20 C -0.17 -4.81 9.50 30.62 0.29 -4.52 16 21 C -0.18 -5.27 9.97 30.62 0.31 -4.97 16 22 H 0.01 0.70 6.07 -2.39 -0.01 0.68 16 23 H 0.01 0.59 7.05 -2.39 -0.02 0.57 16 24 H 0.00 0.26 7.05 -2.39 -0.02 0.25 16 25 H 0.24 14.44 8.31 -92.71 -0.77 13.67 16 26 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.05 1.74 7.02 -2.39 -0.02 1.73 16 28 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.07 1.60 7.20 -2.39 -0.02 1.58 16 33 H 0.07 1.65 7.27 -2.39 -0.02 1.63 16 34 H 0.07 3.35 6.93 -2.39 -0.02 3.34 16 35 H 0.12 2.69 5.82 -2.39 -0.01 2.68 16 36 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 37 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.10 2.63 7.98 -2.39 -0.02 2.61 16 Total: -1.00 -62.97 285.12 5.23 -57.75 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 1.01 Total: 9.88 kcal Atomic # 6 Polarization: -29.51 SS G_CDS: 3.50 Total: -26.01 kcal Atomic # 7 Polarization: -89.15 SS G_CDS: -1.31 Total: -90.45 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -62.97 5.23 -57.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829188827.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.082 kcal (2) G-P(sol) polarization free energy of solvation -62.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds