Wall clock time and date at job start Mon Mar 30 2020 03:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36938 * 120.00056 * 2 1 4 4 H 1.08003 * 119.99679 * 186.09331 * 3 2 1 5 5 C 1.38806 * 120.00225 * 6.09223 * 3 2 1 6 6 N 1.31615 * 119.99819 * 24.99912 * 5 3 2 7 7 Si 1.86797 * 120.00170 * 204.99791 * 5 3 2 8 8 H 1.48505 * 109.47201 * 95.00100 * 7 5 3 9 9 H 1.48498 * 109.47451 * 214.99872 * 7 5 3 10 10 H 1.48499 * 109.47117 * 335.00131 * 7 5 3 11 11 C 1.46497 * 120.00153 * 180.02562 * 2 1 3 12 12 H 1.09001 * 109.47209 * 120.40958 * 11 2 1 13 13 C 1.53002 * 109.47012 * 0.41350 * 11 2 1 14 14 C 1.53002 * 109.46880 * 300.00275 * 13 11 2 15 15 C 1.52999 * 109.47129 * 299.99273 * 14 13 11 16 16 C 1.53009 * 109.46455 * 60.00388 * 15 14 13 17 17 C 1.52997 * 109.47545 * 240.41358 * 11 2 1 18 18 H 1.09000 * 109.47342 * 179.97438 * 17 11 2 19 19 C 1.53002 * 109.46959 * 300.00025 * 17 11 2 20 20 C 1.53003 * 117.51442 * 231.27917 * 19 17 11 21 21 C 1.52997 * 117.49489 * 299.90738 * 19 17 11 22 22 H 1.09000 * 109.46532 * 276.07254 * 1 2 3 23 23 H 1.09007 * 109.46823 * 36.06486 * 1 2 3 24 24 H 1.08992 * 109.47209 * 156.06793 * 1 2 3 25 25 H 0.97010 * 120.00015 * 180.02562 * 6 5 3 26 26 H 1.09000 * 109.47340 * 179.97438 * 13 11 2 27 27 H 1.09006 * 109.47412 * 59.99810 * 13 11 2 28 28 H 1.09006 * 109.47114 * 179.97438 * 14 13 11 29 29 H 1.08991 * 109.47297 * 59.99950 * 14 13 11 30 30 H 1.09000 * 109.47339 * 300.00475 * 15 14 13 31 31 H 1.08993 * 109.47536 * 179.97438 * 15 14 13 32 32 H 1.09008 * 109.46782 * 179.97438 * 16 15 14 33 33 H 1.09000 * 109.47275 * 60.00049 * 16 15 14 34 34 H 1.09001 * 115.55078 * 85.58381 * 19 17 11 35 35 H 1.08999 * 117.49635 * 214.96528 * 20 19 17 36 36 H 1.08998 * 117.49859 * 359.97438 * 20 19 17 37 37 H 1.08996 * 117.50221 * 359.97438 * 21 19 17 38 38 H 1.09001 * 117.49778 * 145.00221 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2252 1.1885 -0.0993 5 6 1.4616 2.3846 0.1276 6 7 0.2875 2.4094 0.7219 7 14 2.2019 3.9626 -0.5441 8 1 1.6751 4.2146 -1.9096 9 1 1.8392 5.0966 0.3433 10 1 3.6800 3.8312 -0.6003 11 6 2.1975 -1.2687 -0.0006 12 1 2.8297 -1.3229 -0.8869 13 6 1.2033 -2.4316 -0.0115 14 6 0.3159 -2.3555 1.2325 15 6 1.1876 -2.4418 2.4869 16 6 2.1819 -1.2788 2.4978 17 6 3.0694 -1.3549 1.2538 18 1 3.6140 -2.2990 1.2535 19 6 4.0636 -0.1920 1.2647 20 6 5.5411 -0.5272 1.4782 21 6 5.0470 -0.0925 0.0969 22 1 -0.3632 0.1087 1.0219 23 1 -0.3633 0.8308 -0.6050 24 1 -0.3633 -0.9392 -0.4168 25 1 -0.1935 3.2471 0.8107 26 1 1.7483 -3.3756 -0.0124 27 1 0.5822 -2.3703 -0.9052 28 1 -0.3928 -3.1838 1.2246 29 1 -0.2291 -1.4116 1.2329 30 1 1.7326 -3.3858 2.4865 31 1 0.5556 -2.3871 3.3732 32 1 2.8027 -1.3399 3.3917 33 1 1.6369 -0.3348 2.4982 34 1 3.6922 0.7400 1.6909 35 1 6.1418 0.1844 2.0447 36 1 5.8050 -1.5763 1.6114 37 1 4.9861 -0.8557 -0.6789 38 1 5.3228 0.9050 -0.2452 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829188830.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:20 Heat of formation + Delta-G solvation = 58.438338 kcal Electronic energy + Delta-G solvation = -16964.857210 eV Core-core repulsion = 14616.278131 eV Total energy + Delta-G solvation = -2348.579079 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.22897 -35.98948 -33.98803 -31.06621 -30.15259 -28.48747 -25.76573 -23.51919 -22.33276 -21.77966 -20.49071 -19.50176 -18.43686 -16.47390 -15.51462 -14.78356 -14.21150 -13.85082 -13.76529 -13.30757 -12.87653 -12.38633 -12.23814 -11.67929 -11.53634 -11.27269 -11.08342 -10.88469 -10.79435 -10.65922 -10.33222 -10.19156 -10.02632 -9.85275 -9.68995 -9.51068 -9.22126 -9.09253 -8.63958 -8.18288 -6.70399 -5.64030 -2.87940 3.45324 3.53379 3.54586 4.53245 4.61712 5.21727 5.40450 5.43450 5.54769 5.66150 5.72087 5.72738 5.79461 6.02745 6.14012 6.15982 6.23586 6.26091 6.30300 6.41833 6.44164 6.46266 6.59065 6.62016 6.72115 6.85152 6.92952 7.01642 7.06259 7.11117 7.19502 7.42662 7.54110 7.79430 8.02370 8.47848 9.37208 10.04757 10.50373 11.43929 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.023769 B = 0.013755 C = 0.010141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.734839 B = 2035.191765 C = 2760.345174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.154 3.846 2 N -0.593 5.593 3 C -0.241 4.241 4 H 0.094 0.906 5 C -0.008 4.008 6 N -0.906 5.906 7 Si 0.883 3.117 8 H -0.292 1.292 9 H -0.296 1.296 10 H -0.282 1.282 11 C 0.184 3.816 12 H 0.031 0.969 13 C -0.119 4.119 14 C -0.148 4.148 15 C -0.109 4.109 16 C -0.104 4.104 17 C -0.062 4.062 18 H 0.047 0.953 19 C -0.103 4.103 20 C -0.208 4.208 21 C -0.177 4.177 22 H 0.025 0.975 23 H 0.048 0.952 24 H 0.009 0.991 25 H 0.248 0.752 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.041 0.959 29 H 0.105 0.895 30 H 0.044 0.956 31 H 0.049 0.951 32 H 0.041 0.959 33 H 0.085 0.915 34 H 0.119 0.881 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.653 -8.427 1.164 9.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.317 5.317 3 C -0.370 4.370 4 H 0.112 0.888 5 C -0.205 4.205 6 N -0.554 5.554 7 Si 0.715 3.285 8 H -0.220 1.220 9 H -0.224 1.224 10 H -0.207 1.207 11 C 0.077 3.923 12 H 0.049 0.951 13 C -0.157 4.157 14 C -0.185 4.185 15 C -0.147 4.147 16 C -0.141 4.141 17 C -0.083 4.083 18 H 0.065 0.935 19 C -0.121 4.121 20 C -0.245 4.245 21 C -0.214 4.214 22 H 0.043 0.957 23 H 0.067 0.933 24 H 0.027 0.973 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.123 0.877 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.137 0.863 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.540 -8.304 1.187 9.105 hybrid contribution 0.450 0.971 -0.316 1.116 sum 3.990 -7.333 0.871 8.393 Atomic orbital electron populations 1.21161 0.83183 0.95991 0.98661 1.44018 1.01489 1.00328 1.85853 1.19742 0.92836 0.83005 1.41409 0.88819 1.24673 0.97167 0.97178 1.01437 1.70210 1.15917 1.25104 1.44134 0.86515 0.78482 0.84368 0.79166 1.22006 1.22363 1.20739 1.20328 0.91724 0.85989 0.94249 0.95144 1.21708 0.98175 0.97732 0.98048 1.22243 0.98093 1.03920 0.94229 1.21430 0.97708 0.98040 0.97517 1.21413 0.96868 0.99839 0.95981 1.21149 0.95124 0.94601 0.97411 0.93487 1.22408 0.88049 1.01009 1.00680 1.23128 0.99937 1.00620 1.00782 1.22784 1.05561 1.01716 0.91368 0.95744 0.93302 0.97265 0.94188 0.93063 0.92230 0.93984 0.87693 0.93755 0.93202 0.94030 0.89671 0.86272 0.90047 0.90134 0.89727 0.89545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 3.66 6.91 59.85 0.41 4.07 16 2 N -0.59 -14.02 2.30 -173.49 -0.40 -14.42 16 3 C -0.24 -6.24 7.61 -15.06 -0.11 -6.35 16 4 H 0.09 2.35 4.10 -52.48 -0.21 2.13 16 5 C -0.01 -0.22 4.95 -17.43 -0.09 -0.31 16 6 N -0.91 -25.88 10.55 55.49 0.59 -25.30 16 7 Si 0.88 21.83 29.62 -169.99 -5.04 16.79 16 8 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 9 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 C 0.18 3.69 2.77 -67.93 -0.19 3.50 16 12 H 0.03 0.64 7.29 -51.93 -0.38 0.26 16 13 C -0.12 -2.07 4.91 -26.73 -0.13 -2.20 16 14 C -0.15 -2.55 5.24 -26.73 -0.14 -2.69 16 15 C -0.11 -1.81 5.92 -26.73 -0.16 -1.97 16 16 C -0.10 -1.93 5.03 -26.73 -0.13 -2.07 16 17 C -0.06 -1.16 2.15 -90.62 -0.19 -1.35 16 18 H 0.05 0.81 7.90 -51.93 -0.41 0.40 16 19 C -0.10 -1.98 3.04 -90.62 -0.28 -2.25 16 20 C -0.21 -3.36 10.18 -26.73 -0.27 -3.64 16 21 C -0.18 -3.15 8.31 -26.73 -0.22 -3.37 16 22 H 0.02 0.63 6.37 -51.93 -0.33 0.30 16 23 H 0.05 1.30 6.57 -51.93 -0.34 0.96 16 24 H 0.01 0.19 4.86 -51.93 -0.25 -0.06 16 25 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.06 1.04 6.95 -51.93 -0.36 0.68 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.11 2.07 3.60 -51.93 -0.19 1.88 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.04 0.72 8.14 -51.92 -0.42 0.30 16 33 H 0.08 1.93 7.60 -51.93 -0.39 1.54 16 34 H 0.12 2.66 6.72 -51.93 -0.35 2.31 16 35 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.08 1.20 8.05 -51.93 -0.42 0.78 16 37 H 0.08 1.44 7.61 -51.93 -0.40 1.05 16 38 H 0.09 1.57 7.94 -51.93 -0.41 1.16 16 LS Contribution 273.54 15.07 4.12 4.12 Total: -1.00 -27.16 273.54 -8.35 -35.51 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -6.12 Total: 1.93 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: -1.50 Total: -18.63 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.19 Total: -39.72 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.04 Total: 16.79 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -27.16 -8.35 -35.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829188830.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.947 kcal (2) G-P(sol) polarization free energy of solvation -27.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds