Wall clock time and date at job start Mon Mar 30 2020 02:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86811 * 119.99896 * 2 1 4 4 H 1.48503 * 109.46778 * 270.00044 * 3 2 1 5 5 H 1.48493 * 109.46886 * 29.99931 * 3 2 1 6 6 H 1.48492 * 109.47026 * 150.00344 * 3 2 1 7 7 C 1.37871 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00102 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00081 * 180.02562 * 7 2 1 10 10 C 1.50706 * 109.47001 * 179.97438 * 9 7 2 11 11 C 1.38385 * 119.83322 * 269.72482 * 10 9 7 12 12 C 1.37902 * 120.16408 * 179.72280 * 11 10 9 13 13 C 1.39794 * 119.83307 * 0.57072 * 12 11 10 14 14 C 1.47315 * 120.16763 * 179.68013 * 13 12 11 15 15 O 1.21315 * 120.00016 * 0.02613 * 14 13 12 16 16 Cl 1.73598 * 120.00064 * 180.02562 * 14 13 12 17 17 C 1.39785 * 119.66590 * 359.70510 * 13 12 11 18 18 C 1.37906 * 119.83333 * 0.02562 * 17 13 12 19 19 H 0.97008 * 120.00053 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.46978 * 60.00053 * 9 7 2 21 21 H 1.09000 * 109.46976 * 299.99298 * 9 7 2 22 22 H 1.08003 * 119.91976 * 0.02562 * 11 10 9 23 23 H 1.08001 * 120.08460 * 180.28050 * 12 11 10 24 24 H 1.08003 * 120.08647 * 179.97438 * 17 13 12 25 25 H 1.08005 * 119.92096 * 180.02562 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1939 0.0000 10 6 4.0139 -2.6148 -0.0001 11 6 4.2484 -3.2622 1.2003 12 6 4.7026 -4.5642 1.2082 13 6 4.9377 -5.2261 -0.0005 14 6 5.4297 -6.6147 -0.0006 15 8 5.6315 -7.1868 1.0499 16 17 5.7207 -7.4323 -1.5041 17 6 4.7039 -4.5635 -1.2089 18 6 4.2443 -3.2634 -1.2008 19 1 -0.4850 0.8401 0.0004 20 1 3.8745 -0.6807 0.8905 21 1 3.8752 -0.6796 -0.8895 22 1 4.0705 -2.7481 2.1334 23 1 4.8809 -5.0698 2.1458 24 1 4.8836 -5.0683 -2.1467 25 1 4.0629 -2.7502 -2.1336 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039057011.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:00 Heat of formation + Delta-G solvation = -30.115060 kcal Electronic energy + Delta-G solvation = -12255.556635 eV Core-core repulsion = 9838.628812 eV Total energy + Delta-G solvation = -2416.927823 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 224.034 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.84193 -38.31049 -36.42509 -33.70246 -31.84661 -30.77211 -28.40345 -24.53605 -22.50140 -21.86923 -20.20681 -17.41278 -16.93378 -16.41611 -15.13114 -15.11079 -14.48448 -14.30357 -13.70259 -13.29111 -12.62942 -12.49356 -11.87030 -11.66199 -11.41859 -11.36007 -10.89870 -10.58306 -10.53029 -10.25105 -10.13072 -9.56041 -8.75433 -8.71125 -8.32365 -6.20730 -4.22475 0.64428 1.60706 1.66812 2.29560 3.19292 3.28246 3.28785 4.05196 4.29052 4.51051 5.04951 5.12514 5.14798 5.50782 5.61735 5.74540 6.10302 6.20513 6.39650 6.63864 6.66341 6.79145 6.90963 7.17019 7.25764 7.50904 8.31828 8.82472 9.37685 10.91667 Molecular weight = 224.03amu Principal moments of inertia in cm(-1) A = 0.059075 B = 0.005747 C = 0.005627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.863080 B = 4871.051489 C = 4975.144848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.521 4.521 8 H 0.075 0.925 9 C 0.006 3.994 10 C 0.023 3.977 11 C -0.137 4.137 12 C -0.046 4.046 13 C -0.196 4.196 14 C 0.454 3.546 15 O -0.427 6.427 16 Cl -0.130 7.130 17 C -0.057 4.057 18 C -0.136 4.136 19 H 0.266 0.734 20 H 0.034 0.966 21 H 0.030 0.970 22 H 0.133 0.867 23 H 0.130 0.870 24 H 0.132 0.868 25 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.686 -7.731 -1.918 13.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.130 4.130 3 Si 0.705 3.295 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.558 4.558 8 H 0.094 0.906 9 C -0.031 4.031 10 C 0.022 3.978 11 C -0.155 4.155 12 C -0.064 4.064 13 C -0.198 4.198 14 C 0.306 3.694 15 O -0.302 6.302 16 Cl -0.104 7.104 17 C -0.076 4.076 18 C -0.154 4.154 19 H 0.076 0.924 20 H 0.052 0.948 21 H 0.049 0.951 22 H 0.151 0.849 23 H 0.148 0.852 24 H 0.149 0.851 25 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 10.651 -7.994 -1.473 13.398 hybrid contribution 0.243 0.751 -0.192 0.812 sum 10.894 -7.243 -1.664 13.187 Atomic orbital electron populations 1.69886 1.06288 1.27245 1.49788 1.24983 0.94756 0.99072 0.94196 0.86799 0.80372 0.83562 0.78762 1.20019 1.21095 1.18881 1.20820 0.87668 0.94914 1.52417 0.90642 1.18983 0.97879 0.88087 0.98123 1.20770 0.86922 0.97904 0.92163 1.21107 1.01217 0.94151 0.98978 1.21250 0.94479 0.94277 0.96437 1.19470 1.12541 0.92034 0.95782 1.24501 0.73906 0.86786 0.84191 1.90659 1.43428 1.66307 1.29774 1.98499 1.92700 1.80135 1.39056 1.21442 0.94810 0.94656 0.96663 1.21122 1.01039 0.94322 0.98904 0.92357 0.94758 0.95140 0.84904 0.85231 0.85060 0.84933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.96 55.43 0.77 -25.48 15 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 15 3 Si 0.88 20.15 27.47 -169.99 -4.67 15.48 15 4 H -0.27 -6.19 7.11 56.52 0.40 -5.78 15 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 15 6 H -0.26 -5.74 6.54 56.52 0.37 -5.37 15 7 C -0.52 -13.81 9.65 -34.44 -0.33 -14.15 15 8 H 0.08 2.21 7.98 -52.48 -0.42 1.79 15 9 C 0.01 0.14 4.17 -29.03 -0.12 0.02 15 10 C 0.02 0.42 5.08 -104.51 -0.53 -0.11 15 11 C -0.14 -2.32 9.67 -39.65 -0.38 -2.70 15 12 C -0.05 -0.71 9.60 -39.12 -0.38 -1.09 15 13 C -0.20 -2.96 5.87 -105.05 -0.62 -3.58 15 14 C 0.45 6.61 7.73 34.42 0.27 6.88 15 15 O -0.43 -7.00 17.16 5.53 0.09 -6.91 15 16 Cl -0.13 -1.62 27.76 -51.86 -1.44 -3.06 15 17 C -0.06 -0.83 9.51 -39.13 -0.37 -1.21 15 18 C -0.14 -2.24 9.68 -39.64 -0.38 -2.63 15 19 H 0.27 7.31 8.31 -40.82 -0.34 6.97 15 20 H 0.03 0.73 7.14 -51.93 -0.37 0.36 15 21 H 0.03 0.64 7.51 -51.93 -0.39 0.25 15 22 H 0.13 2.12 8.06 -52.48 -0.42 1.69 15 23 H 0.13 1.81 7.65 -52.49 -0.40 1.41 15 24 H 0.13 1.58 6.98 -52.48 -0.37 1.21 15 25 H 0.13 2.03 8.06 -52.48 -0.42 1.61 15 LS Contribution 245.20 15.07 3.70 3.70 Total: -1.00 -28.53 245.20 -6.45 -34.98 By element: Atomic # 1 Polarization: -0.07 SS G_CDS: -1.96 Total: -2.03 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -2.95 Total: -16.67 kcal Atomic # 7 Polarization: -26.26 SS G_CDS: 0.77 Total: -25.48 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: 0.09 Total: -6.91 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.67 Total: 15.48 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -1.44 Total: -3.06 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -28.53 -6.45 -34.98 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039057011.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.863 kcal (2) G-P(sol) polarization free energy of solvation -28.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds