Wall clock time and date at job start Mon Mar 30 2020 02:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30577 * 1 3 3 Si 1.86808 * 120.00171 * 2 1 4 4 H 1.48496 * 109.47088 * 240.00173 * 3 2 1 5 5 H 1.48501 * 109.46866 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47096 * 119.99888 * 3 2 1 7 7 C 1.40338 * 120.00319 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00291 * 197.86135 * 7 2 1 9 9 C 1.40997 * 119.99366 * 17.86040 * 7 2 1 10 10 C 1.40960 * 120.07231 * 204.69055 * 9 7 2 11 11 C 1.36207 * 119.91737 * 180.02562 * 10 9 7 12 12 C 1.40315 * 120.07927 * 359.97438 * 11 10 9 13 13 C 1.46865 * 119.92281 * 180.02562 * 12 11 10 14 14 O 1.21318 * 120.00087 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.00291 * 180.02562 * 13 12 11 16 16 Cl 1.80296 * 109.47603 * 179.97438 * 15 13 12 17 17 C 1.40308 * 120.15489 * 0.27484 * 12 11 10 18 18 C 1.36216 * 120.08038 * 359.44586 * 17 12 11 19 19 H 0.97001 * 120.00019 * 359.97438 * 1 2 3 20 20 H 1.08002 * 120.04015 * 359.97438 * 10 9 7 21 21 H 1.07998 * 119.95953 * 179.97438 * 11 10 9 22 22 H 1.09006 * 109.46861 * 299.99571 * 15 13 12 23 23 H 1.09002 * 109.47388 * 59.98990 * 15 13 12 24 24 H 1.08005 * 119.96185 * 179.70790 * 17 12 11 25 25 H 1.07997 * 120.03972 * 180.27889 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3058 0.0000 0.0000 3 14 2.2399 1.6178 0.0000 4 1 3.0936 1.6964 -1.2125 5 1 1.2748 2.7465 0.0006 6 1 3.0936 1.6964 1.2125 7 6 2.0075 -1.2153 -0.0005 8 1 3.0484 -1.2380 0.2863 9 6 1.3534 -2.4068 -0.3756 10 6 1.8271 -3.6496 0.0912 11 6 1.1931 -4.7987 -0.2736 12 6 0.0696 -4.7461 -1.1124 13 6 -0.6117 -5.9872 -1.5030 14 8 -0.2026 -7.0562 -1.1009 15 6 -1.8183 -5.9329 -2.4043 16 17 -2.4238 -7.6053 -2.6995 17 6 -0.4015 -3.5111 -1.5830 18 6 0.2241 -2.3576 -1.2178 19 1 -0.4850 0.8401 0.0004 20 1 2.6922 -3.6908 0.7365 21 1 1.5557 -5.7513 0.0833 22 1 -2.6007 -5.3415 -1.9286 23 1 -1.5423 -5.4738 -3.3536 24 1 -1.2638 -3.4747 -2.2324 25 1 -0.1417 -1.4071 -1.5768 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039220611.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:16 Heat of formation + Delta-G solvation = -42.509291 kcal Electronic energy + Delta-G solvation = -12419.507066 eV Core-core repulsion = 10002.041789 eV Total energy + Delta-G solvation = -2417.465277 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 224.034 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.78558 -37.10048 -35.55024 -34.02845 -30.96559 -29.61427 -28.63723 -25.70867 -21.99103 -20.99367 -18.99822 -17.66051 -16.11852 -15.51515 -14.80687 -14.72101 -14.12305 -13.44128 -13.15563 -12.75068 -12.46070 -12.20711 -12.00584 -11.48762 -11.35744 -11.08387 -10.75803 -10.51496 -10.20548 -10.17915 -9.67929 -9.45947 -8.82863 -7.85307 -7.68954 -7.18977 -4.75001 1.84898 2.44529 2.79467 2.86291 2.89051 2.95183 3.41473 3.63166 4.35102 4.69465 5.30037 5.44819 5.48103 5.95664 6.19356 6.26630 6.64724 6.69381 6.90966 7.01325 7.31415 7.58912 7.69869 7.73870 7.93204 8.25635 8.44028 8.47493 8.61775 9.71785 Molecular weight = 224.03amu Principal moments of inertia in cm(-1) A = 0.066569 B = 0.005911 C = 0.005511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.516272 B = 4735.613877 C = 5079.142372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.073 3.927 3 Si 0.917 3.083 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.432 4.432 8 H 0.088 0.912 9 C 0.131 3.869 10 C -0.241 4.241 11 C -0.017 4.017 12 C -0.315 4.315 13 C 0.389 3.611 14 O -0.485 6.485 15 C -0.076 4.076 16 Cl -0.174 7.174 17 C -0.056 4.056 18 C -0.181 4.181 19 H 0.290 0.710 20 H 0.099 0.901 21 H 0.101 0.899 22 H 0.116 0.884 23 H 0.116 0.884 24 H 0.094 0.906 25 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.152 0.088 -3.363 3.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.150 4.150 3 Si 0.740 3.260 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.459 4.459 8 H 0.106 0.894 9 C 0.127 3.873 10 C -0.261 4.261 11 C -0.036 4.036 12 C -0.318 4.318 13 C 0.272 3.728 14 O -0.366 6.366 15 C -0.139 4.139 16 Cl -0.147 7.147 17 C -0.075 4.075 18 C -0.200 4.200 19 H 0.102 0.898 20 H 0.117 0.883 21 H 0.119 0.881 22 H 0.135 0.865 23 H 0.134 0.866 24 H 0.112 0.888 25 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.222 -0.420 -3.168 3.892 hybrid contribution 0.114 0.900 -0.029 0.908 sum -2.108 0.480 -3.197 3.860 Atomic orbital electron populations 1.69697 1.08051 1.30586 1.30119 1.26183 0.94868 1.02144 0.91801 0.86205 0.80233 0.79076 0.80522 1.18301 1.19880 1.18497 1.19944 0.98514 0.91215 1.36218 0.89438 1.17844 0.90300 0.92187 0.86932 1.20721 1.04732 0.92651 1.07978 1.20486 0.92767 0.97130 0.93207 1.19225 1.05154 0.92157 1.15259 1.22026 0.82965 0.89394 0.78391 1.90475 1.63797 1.32194 1.50106 1.24928 1.00147 0.84990 1.03840 1.98692 1.89359 1.29795 1.96864 1.20620 0.97257 0.92400 0.97247 1.20998 0.99923 0.97078 1.02011 0.89833 0.88292 0.88121 0.86540 0.86586 0.88793 0.86115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.41 10.95 55.57 0.61 -16.80 15 2 C 0.07 1.62 5.14 -17.30 -0.09 1.53 15 3 Si 0.92 16.42 29.60 -169.99 -5.03 11.38 15 4 H -0.26 -4.62 7.11 56.52 0.40 -4.22 15 5 H -0.27 -4.77 7.11 56.52 0.40 -4.37 15 6 H -0.26 -4.64 7.11 56.52 0.40 -4.24 15 7 C -0.43 -10.28 9.04 -37.75 -0.34 -10.63 15 8 H 0.09 1.97 7.91 -52.49 -0.42 1.56 15 9 C 0.13 3.20 5.58 -106.79 -0.60 2.61 15 10 C -0.24 -5.64 9.73 -39.28 -0.38 -6.02 15 11 C -0.02 -0.39 9.53 -39.53 -0.38 -0.77 15 12 C -0.32 -6.86 5.89 -104.85 -0.62 -7.48 15 13 C 0.39 7.78 7.15 -30.82 -0.22 7.56 15 14 O -0.49 -10.96 15.98 5.52 0.09 -10.87 15 15 C -0.08 -1.18 5.73 36.00 0.21 -0.97 15 16 Cl -0.17 -2.81 28.37 -51.86 -1.47 -4.28 15 17 C -0.06 -1.19 9.40 -39.53 -0.37 -1.56 15 18 C -0.18 -4.25 8.63 -39.28 -0.34 -4.58 15 19 H 0.29 5.94 8.29 -40.82 -0.34 5.60 15 20 H 0.10 2.15 8.06 -52.49 -0.42 1.73 15 21 H 0.10 2.20 7.63 -52.49 -0.40 1.80 15 22 H 0.12 1.59 8.08 -51.93 -0.42 1.17 15 23 H 0.12 1.55 8.07 -51.93 -0.42 1.13 15 24 H 0.09 1.65 7.01 -52.48 -0.37 1.28 15 25 H 0.12 2.86 6.15 -52.49 -0.32 2.53 15 LS Contribution 243.21 15.07 3.67 3.67 Total: -1.00 -26.08 243.21 -7.17 -33.25 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -1.90 Total: 3.97 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: -3.13 Total: -20.32 kcal Atomic # 7 Polarization: -17.41 SS G_CDS: 0.61 Total: -16.80 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 14 Polarization: 16.42 SS G_CDS: -5.03 Total: 11.38 kcal Atomic # 17 Polarization: -2.81 SS G_CDS: -1.47 Total: -4.28 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -26.08 -7.17 -33.25 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039220611.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.260 kcal (2) G-P(sol) polarization free energy of solvation -26.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds