Wall clock time and date at job start Mon Mar 30 2020 02:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30519 * 1 3 3 Si 1.86799 * 120.00354 * 2 1 4 4 H 1.48497 * 109.47497 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46807 * 299.99766 * 3 2 1 6 6 H 1.48508 * 109.47064 * 59.99360 * 3 2 1 7 7 C 1.40462 * 119.99957 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00192 * 180.02562 * 7 2 1 9 9 C 1.41033 * 119.99926 * 359.97438 * 7 2 1 10 10 O 1.21434 * 119.99895 * 0.02562 * 9 7 2 11 11 C 1.50700 * 120.00040 * 179.97438 * 9 7 2 12 12 O 1.42895 * 109.46892 * 180.02562 * 11 9 7 13 13 C 1.35951 * 116.99758 * 179.97438 * 12 11 9 14 14 C 1.38708 * 120.03040 * 0.28885 * 13 12 11 15 15 C 1.38147 * 119.96935 * 180.25012 * 14 13 12 16 16 C 1.38455 * 120.02958 * 359.46222 * 15 14 13 17 17 F 1.35101 * 119.97206 * 180.29906 * 16 15 14 18 18 C 1.38452 * 120.06193 * 0.28172 * 16 15 14 19 19 C 1.38156 * 120.03063 * 359.97438 * 18 16 15 20 20 H 0.97001 * 120.00011 * 0.02562 * 1 2 3 21 21 H 1.09005 * 109.46403 * 60.00754 * 11 9 7 22 22 H 1.08995 * 109.47035 * 300.00821 * 11 9 7 23 23 H 1.07998 * 120.01328 * 0.02562 * 14 13 12 24 24 H 1.08002 * 119.98838 * 179.74746 * 15 14 13 25 25 H 1.07997 * 119.98751 * 179.97438 * 18 16 15 26 26 H 1.07999 * 120.02057 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 3.6993 1.3463 0.0006 5 1 1.8806 2.3963 -1.2126 6 1 1.8804 2.3965 1.2125 7 6 2.0075 -1.2164 0.0005 8 1 3.0875 -1.2165 0.0010 9 6 1.3023 -2.4378 0.0016 10 8 0.0880 -2.4378 0.0016 11 6 2.0558 -3.7429 0.0016 12 8 1.1271 -4.8290 0.0022 13 6 1.6467 -6.0853 0.0018 14 6 3.0217 -6.2678 0.0068 15 6 3.5484 -7.5449 0.0011 16 6 2.7044 -8.6425 0.0016 17 9 3.2207 -9.8909 0.0022 18 6 1.3317 -8.4618 0.0020 19 6 0.8023 -7.1857 0.0023 20 1 -0.4850 0.8401 -0.0004 21 1 2.6830 -3.8002 0.8913 22 1 2.6818 -3.8010 -0.8887 23 1 3.6803 -5.4118 0.0115 24 1 4.6190 -7.6874 0.0009 25 1 0.6744 -9.3188 0.0019 26 1 -0.2685 -7.0450 0.0030 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041206128.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:54 Heat of formation + Delta-G solvation = -103.511058 kcal Electronic energy + Delta-G solvation = -14224.109276 eV Core-core repulsion = 11375.662389 eV Total energy + Delta-G solvation = -2848.446888 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.064 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.69887 -39.70860 -37.31344 -35.99486 -32.73894 -31.14419 -29.47311 -28.24540 -25.83590 -22.94095 -21.97726 -19.77189 -18.01674 -17.05552 -16.57521 -16.08703 -15.56768 -15.23025 -15.14625 -14.52915 -13.97181 -13.50695 -13.30076 -12.89036 -12.59394 -12.56562 -11.78409 -11.53178 -11.46111 -11.05820 -10.72046 -10.44557 -10.29798 -10.16226 -9.07750 -9.04031 -7.80332 -7.53590 -6.38852 -5.06169 1.28336 1.40943 2.97305 3.07330 3.12027 3.71039 3.74462 3.99101 4.08804 4.43909 4.82767 4.90180 5.23931 5.26631 5.45710 5.72486 5.87190 5.99101 6.21274 6.25754 6.26845 6.30423 6.51181 6.87712 7.12885 7.84223 7.90382 8.67645 8.68991 10.20210 10.41331 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.074763 B = 0.005181 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.427195 B = 5402.682687 C = 5761.964308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.736 5.736 2 C 0.082 3.918 3 Si 0.912 3.088 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.532 4.532 8 H 0.073 0.927 9 C 0.364 3.636 10 O -0.522 6.522 11 C 0.015 3.985 12 O -0.284 6.284 13 C 0.135 3.865 14 C -0.190 4.190 15 C -0.111 4.111 16 C 0.037 3.963 17 F -0.149 7.149 18 C -0.112 4.112 19 C -0.133 4.133 20 H 0.276 0.724 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.139 0.861 24 H 0.133 0.867 25 H 0.137 0.863 26 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.165 -9.720 0.004 11.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.365 5.365 2 C -0.142 4.142 3 Si 0.736 3.264 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.563 4.563 8 H 0.092 0.908 9 C 0.257 3.743 10 O -0.409 6.409 11 C -0.061 4.061 12 O -0.195 6.195 13 C 0.087 3.913 14 C -0.209 4.209 15 C -0.129 4.129 16 C 0.018 3.982 17 F -0.128 7.128 18 C -0.131 4.131 19 C -0.152 4.152 20 H 0.087 0.913 21 H 0.084 0.916 22 H 0.084 0.916 23 H 0.157 0.843 24 H 0.151 0.849 25 H 0.155 0.845 26 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.206 -9.640 0.005 10.956 hybrid contribution 1.062 0.525 -0.001 1.185 sum 6.268 -9.115 0.004 11.062 Atomic orbital electron populations 1.69957 1.07574 1.28261 1.30676 1.25988 0.94668 1.01043 0.92507 0.86235 0.80674 0.80912 0.78618 1.18361 1.19751 1.19754 1.20576 0.94954 0.91028 1.49784 0.90828 1.19414 0.89452 0.85792 0.79691 1.90456 1.15090 1.87813 1.47498 1.23848 0.93810 0.87981 1.00491 1.86366 1.35956 1.10877 1.86349 1.19416 0.91683 0.86734 0.93443 1.21237 0.94550 0.97794 1.07331 1.20880 0.99952 0.91225 1.00890 1.17503 0.92034 0.79313 1.09331 1.91447 1.87489 1.39133 1.94692 1.20882 0.93230 0.97703 1.01315 1.20341 1.00520 0.89351 1.04984 0.91334 0.91646 0.91645 0.84306 0.84919 0.84534 0.84179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.92 11.72 55.57 0.65 -20.27 15 2 C 0.08 2.15 5.50 -17.27 -0.10 2.06 15 3 Si 0.91 18.75 29.56 -169.99 -5.03 13.72 15 4 H -0.26 -5.14 7.11 56.52 0.40 -4.74 15 5 H -0.27 -5.49 7.11 56.52 0.40 -5.08 15 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 15 7 C -0.53 -14.21 9.22 -37.69 -0.35 -14.56 15 8 H 0.07 1.76 7.85 -52.49 -0.41 1.35 15 9 C 0.36 10.07 6.98 -33.25 -0.23 9.84 15 10 O -0.52 -16.67 15.02 -14.47 -0.22 -16.89 15 11 C 0.01 0.32 5.09 36.01 0.18 0.50 15 12 O -0.28 -6.27 9.67 -39.48 -0.38 -6.65 15 13 C 0.13 2.40 6.69 -39.23 -0.26 2.14 15 14 C -0.19 -2.91 9.04 -39.44 -0.36 -3.27 15 15 C -0.11 -1.50 10.02 -39.53 -0.40 -1.90 15 16 C 0.04 0.52 7.30 -39.42 -0.29 0.24 15 17 F -0.15 -2.06 17.27 2.25 0.04 -2.02 15 18 C -0.11 -1.51 10.02 -39.53 -0.40 -1.91 15 19 C -0.13 -2.06 9.99 -39.44 -0.39 -2.46 15 20 H 0.28 6.96 8.29 -40.82 -0.34 6.62 15 21 H 0.07 1.27 7.65 -51.93 -0.40 0.87 15 22 H 0.07 1.27 7.67 -51.93 -0.40 0.87 15 23 H 0.14 1.95 6.30 -52.49 -0.33 1.62 15 24 H 0.13 1.47 8.06 -52.49 -0.42 1.05 15 25 H 0.14 1.46 8.06 -52.49 -0.42 1.04 15 26 H 0.14 2.03 8.06 -52.49 -0.42 1.61 15 LS Contribution 246.34 15.07 3.71 3.71 Total: -1.00 -31.85 246.34 -5.75 -37.59 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -1.94 Total: 0.13 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -2.58 Total: -9.33 kcal Atomic # 7 Polarization: -20.92 SS G_CDS: 0.65 Total: -20.27 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.60 Total: -23.54 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -31.85 -5.75 -37.59 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041206128.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.918 kcal (2) G-P(sol) polarization free energy of solvation -31.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds