Wall clock time and date at job start Mon Mar 30 2020 02:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30519 * 1 3 3 Si 1.86799 * 120.00354 * 2 1 4 4 H 1.48497 * 109.47497 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46807 * 299.99766 * 3 2 1 6 6 H 1.48508 * 109.47064 * 59.99360 * 3 2 1 7 7 C 1.40462 * 119.99957 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00192 * 180.02562 * 7 2 1 9 9 C 1.41033 * 119.99926 * 359.97438 * 7 2 1 10 10 O 1.21434 * 119.99895 * 0.02562 * 9 7 2 11 11 C 1.50700 * 120.00040 * 179.97438 * 9 7 2 12 12 O 1.42895 * 109.46892 * 180.02562 * 11 9 7 13 13 C 1.35951 * 116.99758 * 179.97438 * 12 11 9 14 14 C 1.38708 * 120.03040 * 0.28885 * 13 12 11 15 15 C 1.38147 * 119.96935 * 180.25012 * 14 13 12 16 16 C 1.38455 * 120.02958 * 359.46222 * 15 14 13 17 17 F 1.35101 * 119.97206 * 180.29906 * 16 15 14 18 18 C 1.38452 * 120.06193 * 0.28172 * 16 15 14 19 19 C 1.38156 * 120.03063 * 359.97438 * 18 16 15 20 20 H 0.97001 * 120.00011 * 0.02562 * 1 2 3 21 21 H 1.09005 * 109.46403 * 60.00754 * 11 9 7 22 22 H 1.08995 * 109.47035 * 300.00821 * 11 9 7 23 23 H 1.07998 * 120.01328 * 0.02562 * 14 13 12 24 24 H 1.08002 * 119.98838 * 179.74746 * 15 14 13 25 25 H 1.07997 * 119.98751 * 179.97438 * 18 16 15 26 26 H 1.07999 * 120.02057 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 3.6993 1.3463 0.0006 5 1 1.8806 2.3963 -1.2126 6 1 1.8804 2.3965 1.2125 7 6 2.0075 -1.2164 0.0005 8 1 3.0875 -1.2165 0.0010 9 6 1.3023 -2.4378 0.0016 10 8 0.0880 -2.4378 0.0016 11 6 2.0558 -3.7429 0.0016 12 8 1.1271 -4.8290 0.0022 13 6 1.6467 -6.0853 0.0018 14 6 3.0217 -6.2678 0.0068 15 6 3.5484 -7.5449 0.0011 16 6 2.7044 -8.6425 0.0016 17 9 3.2207 -9.8909 0.0022 18 6 1.3317 -8.4618 0.0020 19 6 0.8023 -7.1857 0.0023 20 1 -0.4850 0.8401 -0.0004 21 1 2.6830 -3.8002 0.8913 22 1 2.6818 -3.8010 -0.8887 23 1 3.6803 -5.4118 0.0115 24 1 4.6190 -7.6874 0.0009 25 1 0.6744 -9.3188 0.0019 26 1 -0.2685 -7.0450 0.0030 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041206128.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:54 Heat of formation + Delta-G solvation = -123.075695 kcal Electronic energy + Delta-G solvation = -14224.957662 eV Core-core repulsion = 11375.662389 eV Total energy + Delta-G solvation = -2849.295274 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.064 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.80689 -41.08286 -39.03135 -37.69795 -34.79349 -32.30818 -30.97817 -29.92702 -27.64798 -24.15877 -23.26496 -21.62370 -19.36365 -18.45088 -18.20688 -17.70274 -16.97431 -16.92557 -16.43998 -15.71318 -15.56025 -15.05624 -14.62585 -14.32170 -14.25607 -13.92183 -13.30326 -13.22391 -13.12270 -12.69341 -12.43346 -12.01220 -11.79205 -11.72689 -11.02547 -10.19175 -9.62520 -9.08568 -8.37676 -7.18625 0.16080 0.20956 1.34667 1.39804 1.58873 2.11593 2.14967 2.37507 2.57075 3.27269 3.30923 3.70995 3.82897 4.07766 4.19298 4.37421 4.45063 4.54101 4.61677 4.90909 5.10131 5.11998 5.15602 5.29828 5.73618 5.89038 6.39332 6.64325 6.73313 8.18395 8.44417 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.074763 B = 0.005181 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.427195 B = 5402.682687 C = 5761.964308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.023 3.977 3 Si 1.002 2.998 4 H -0.241 1.241 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.554 4.554 8 H 0.100 0.900 9 C 0.334 3.666 10 O -0.583 6.583 11 C 0.029 3.971 12 O -0.322 6.322 13 C 0.099 3.901 14 C -0.189 4.189 15 C -0.105 4.105 16 C 0.039 3.961 17 F -0.145 7.145 18 C -0.104 4.104 19 C -0.142 4.142 20 H 0.284 0.716 21 H 0.088 0.912 22 H 0.088 0.912 23 H 0.151 0.849 24 H 0.163 0.837 25 H 0.166 0.834 26 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.585 -10.069 0.004 13.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.196 4.196 3 Si 0.820 3.180 4 H -0.163 1.163 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.585 4.585 8 H 0.118 0.882 9 C 0.231 3.769 10 O -0.476 6.476 11 C -0.047 4.047 12 O -0.236 6.236 13 C 0.053 3.947 14 C -0.207 4.207 15 C -0.123 4.123 16 C 0.020 3.980 17 F -0.124 7.124 18 C -0.122 4.122 19 C -0.161 4.161 20 H 0.094 0.906 21 H 0.106 0.894 22 H 0.106 0.894 23 H 0.168 0.832 24 H 0.181 0.819 25 H 0.183 0.817 26 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.661 -10.029 0.006 12.620 hybrid contribution 0.315 0.476 -0.001 0.570 sum 7.976 -9.553 0.005 12.445 Atomic orbital electron populations 1.70107 1.10142 1.30091 1.31523 1.27338 0.95502 1.05789 0.90981 0.84901 0.79643 0.74545 0.78868 1.16349 1.19021 1.19031 1.21197 0.96407 0.91626 1.49247 0.88237 1.20274 0.89165 0.88787 0.78644 1.90408 1.17509 1.89333 1.50304 1.23420 0.92878 0.85850 1.02512 1.86277 1.37010 1.12477 1.87803 1.19741 0.93339 0.85408 0.96210 1.21361 0.93492 0.99062 1.06825 1.21161 1.01519 0.90219 0.99432 1.17674 0.92317 0.79575 1.08466 1.91466 1.87426 1.38894 1.94571 1.21124 0.93710 0.97610 0.99801 1.20497 1.00645 0.89714 1.05203 0.90574 0.89420 0.89432 0.83180 0.81935 0.81651 0.84148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -46.23 11.72 21.91 0.26 -45.97 15 2 C 0.02 1.22 5.50 85.43 0.47 1.69 15 3 Si 1.00 37.80 29.56 68.60 2.03 39.83 15 4 H -0.24 -8.26 7.11 99.48 0.71 -7.56 15 5 H -0.27 -9.64 7.11 99.48 0.71 -8.94 15 6 H -0.27 -9.65 7.11 99.48 0.71 -8.94 15 7 C -0.55 -29.73 9.22 23.50 0.22 -29.52 15 8 H 0.10 4.63 7.85 -2.91 -0.02 4.61 15 9 C 0.33 19.02 6.98 26.37 0.18 19.21 15 10 O -0.58 -39.21 15.02 15.52 0.23 -38.98 15 11 C 0.03 1.26 5.09 71.24 0.36 1.63 15 12 O -0.32 -14.62 9.67 -73.97 -0.72 -15.34 15 13 C 0.10 3.51 6.69 22.50 0.15 3.66 15 14 C -0.19 -5.44 9.04 22.36 0.20 -5.24 15 15 C -0.10 -2.54 10.02 22.30 0.22 -2.31 15 16 C 0.04 0.98 7.30 22.37 0.16 1.14 15 17 F -0.14 -3.54 17.27 44.97 0.78 -2.76 15 18 C -0.10 -2.57 10.02 22.30 0.22 -2.35 15 19 C -0.14 -4.33 9.99 22.36 0.22 -4.11 15 20 H 0.28 14.75 8.29 -92.71 -0.77 13.98 15 21 H 0.09 3.34 7.65 -2.38 -0.02 3.32 15 22 H 0.09 3.34 7.67 -2.39 -0.02 3.32 15 23 H 0.15 3.89 6.30 -2.91 -0.02 3.87 15 24 H 0.16 2.93 8.06 -2.91 -0.02 2.91 15 25 H 0.17 3.06 8.06 -2.91 -0.02 3.04 15 26 H 0.14 4.15 8.06 -2.91 -0.02 4.13 15 Total: -1.00 -71.89 246.34 6.20 -65.69 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 1.20 Total: 13.74 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: 2.42 Total: -16.20 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 0.26 Total: -45.97 kcal Atomic # 8 Polarization: -53.84 SS G_CDS: -0.48 Total: -54.32 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.78 Total: -2.76 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 2.03 Total: 39.83 kcal Total: -71.89 6.20 -65.69 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041206128.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.389 kcal (2) G-P(sol) polarization free energy of solvation -71.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds