Wall clock time and date at job start Mon Mar 30 2020 02:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30522 * 1 3 3 Si 1.86801 * 120.00008 * 2 1 4 4 H 1.48502 * 109.47305 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47490 * 299.99843 * 3 2 1 6 6 H 1.48500 * 109.46677 * 60.00431 * 3 2 1 7 7 C 1.40464 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99726 * 179.97438 * 7 2 1 9 9 C 1.41020 * 120.00070 * 0.02562 * 7 2 1 10 10 O 1.21436 * 119.99903 * 359.97438 * 9 7 2 11 11 C 1.50698 * 120.00158 * 180.02562 * 9 7 2 12 12 C 1.50702 * 109.47238 * 179.97438 * 11 9 7 13 13 C 1.38270 * 119.99101 * 270.27404 * 12 11 9 14 14 C 1.38215 * 120.02537 * 180.27948 * 13 12 11 15 15 C 1.38238 * 120.01126 * 359.44038 * 14 13 12 16 16 C 1.38325 * 119.98878 * 0.28199 * 15 14 13 17 17 Cl 1.73606 * 120.01335 * 179.97438 * 16 15 14 18 18 C 1.38193 * 119.99765 * 89.99806 * 12 11 9 19 19 H 0.96998 * 119.99863 * 0.02562 * 1 2 3 20 20 H 1.08998 * 109.47579 * 59.99352 * 11 9 7 21 21 H 1.09000 * 109.46950 * 299.99274 * 11 9 7 22 22 H 1.07997 * 119.98420 * 0.02562 * 13 12 11 23 23 H 1.08002 * 119.99636 * 179.72646 * 14 13 12 24 24 H 1.07999 * 120.00577 * 180.25936 * 15 14 13 25 25 H 1.08003 * 120.00423 * 0.02562 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6177 0.0000 4 1 3.6993 1.3464 0.0006 5 1 1.8806 2.3965 -1.2124 6 1 1.8805 2.3963 1.2126 7 6 2.0075 -1.2165 -0.0005 8 1 3.0875 -1.2164 -0.0010 9 6 1.3025 -2.4377 -0.0016 10 8 0.0881 -2.4377 -0.0016 11 6 2.0559 -3.7428 -0.0016 12 6 1.0766 -4.8883 -0.0023 13 6 0.6227 -5.4102 1.1950 14 6 -0.2710 -6.4645 1.1953 15 6 -0.7205 -6.9903 -0.0016 16 6 -0.2711 -6.4648 -1.1997 17 17 -0.8346 -7.1251 -2.7032 18 6 0.6281 -5.4131 -1.1994 19 1 -0.4850 0.8400 -0.0004 20 1 2.6820 -3.8010 0.8887 21 1 2.6832 -3.8002 -0.8912 22 1 0.9697 -4.9965 2.1302 23 1 -0.6219 -6.8747 2.1307 24 1 -1.4220 -7.8114 -0.0013 25 1 0.9796 -5.0028 -2.1345 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041206554.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:31 Heat of formation + Delta-G solvation = -36.497492 kcal Electronic energy + Delta-G solvation = -12497.976122 eV Core-core repulsion = 10080.771536 eV Total energy + Delta-G solvation = -2417.204586 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 224.034 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.98845 -36.71983 -36.01479 -32.78176 -31.76561 -30.26807 -27.97619 -25.73751 -22.21418 -21.51838 -19.31921 -16.45763 -16.26917 -15.18774 -15.11927 -15.00184 -13.68827 -13.43443 -13.08973 -12.86144 -12.58734 -12.20480 -11.50458 -11.29808 -11.04893 -11.02516 -10.93030 -10.48032 -10.30033 -10.28274 -10.17717 -8.94099 -8.42846 -8.21538 -7.37176 -6.24552 -4.91644 1.64755 1.78121 2.46358 3.02666 3.13201 3.17589 4.00803 4.14573 4.22597 5.18416 5.26327 5.42012 5.52510 5.76317 5.87595 6.06868 6.29987 6.47674 6.51654 6.64238 6.69319 6.77095 7.17048 7.24467 7.29808 8.06624 8.81562 8.86597 10.33264 10.56177 Molecular weight = 224.03amu Principal moments of inertia in cm(-1) A = 0.046004 B = 0.006561 C = 0.006211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.490334 B = 4266.699826 C = 4506.764101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.083 3.917 3 Si 0.904 3.096 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.070 0.930 9 C 0.366 3.634 10 O -0.536 6.536 11 C -0.133 4.133 12 C -0.019 4.019 13 C -0.109 4.109 14 C -0.110 4.110 15 C -0.132 4.132 16 C -0.031 4.031 17 Cl -0.089 7.089 18 C -0.104 4.104 19 H 0.272 0.728 20 H 0.077 0.923 21 H 0.076 0.924 22 H 0.123 0.877 23 H 0.124 0.876 24 H 0.124 0.876 25 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.898 -9.347 -0.069 9.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.368 5.368 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.569 4.569 8 H 0.088 0.912 9 C 0.260 3.740 10 O -0.423 6.423 11 C -0.171 4.171 12 C -0.019 4.019 13 C -0.127 4.127 14 C -0.128 4.128 15 C -0.151 4.151 16 C -0.057 4.057 17 Cl -0.061 7.061 18 C -0.123 4.123 19 H 0.083 0.917 20 H 0.096 0.904 21 H 0.095 0.905 22 H 0.141 0.859 23 H 0.142 0.858 24 H 0.142 0.858 25 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.086 -9.367 -0.206 9.432 hybrid contribution 0.491 0.797 -0.158 0.949 sum 1.576 -8.570 -0.364 8.721 Atomic orbital electron populations 1.69966 1.07493 1.27832 1.31547 1.26004 0.94567 1.00893 0.92529 0.86363 0.80838 0.81488 0.78480 1.18446 1.19910 1.19922 1.20804 0.94898 0.91795 1.49369 0.91205 1.19384 0.89057 0.86838 0.78728 1.90441 1.15324 1.88465 1.48113 1.21388 0.97659 0.95658 1.02371 1.19797 0.96129 0.94068 0.91952 1.21092 0.97598 0.95911 0.98101 1.20967 0.97727 0.96978 0.97117 1.20818 1.01729 1.01564 0.90943 1.20812 1.00251 0.98344 0.86314 1.98326 1.88747 1.85416 1.33562 1.20871 0.97342 0.95085 0.98974 0.91674 0.90430 0.90543 0.85919 0.85770 0.85820 0.85535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.36 11.72 55.57 0.65 -20.71 15 2 C 0.08 2.23 5.50 -17.27 -0.10 2.14 15 3 Si 0.90 19.27 29.56 -169.99 -5.03 14.25 15 4 H -0.26 -5.37 7.11 56.52 0.40 -4.97 15 5 H -0.27 -5.74 7.11 56.52 0.40 -5.33 15 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 15 7 C -0.54 -14.62 9.22 -37.69 -0.35 -14.97 15 8 H 0.07 1.74 7.85 -52.49 -0.41 1.33 15 9 C 0.37 10.00 6.90 -33.26 -0.23 9.77 15 10 O -0.54 -16.68 14.56 5.42 0.08 -16.60 15 11 C -0.13 -2.83 5.70 -29.03 -0.17 -2.99 15 12 C -0.02 -0.39 4.37 -104.63 -0.46 -0.84 15 13 C -0.11 -1.99 9.70 -39.58 -0.38 -2.37 15 14 C -0.11 -1.74 10.05 -39.59 -0.40 -2.14 15 15 C -0.13 -2.09 9.83 -39.55 -0.39 -2.48 15 16 C -0.03 -0.54 6.32 -39.50 -0.25 -0.79 15 17 Cl -0.09 -1.38 28.96 -51.86 -1.50 -2.88 15 18 C -0.10 -2.01 9.49 -39.55 -0.38 -2.39 15 19 H 0.27 7.06 8.29 -40.82 -0.34 6.73 15 20 H 0.08 1.49 8.09 -51.93 -0.42 1.07 15 21 H 0.08 1.49 8.09 -51.93 -0.42 1.07 15 22 H 0.12 2.08 8.06 -52.49 -0.42 1.66 15 23 H 0.12 1.56 8.06 -52.49 -0.42 1.14 15 24 H 0.12 1.63 8.06 -52.49 -0.42 1.21 15 25 H 0.13 2.37 8.06 -52.48 -0.42 1.95 15 LS Contribution 247.75 15.07 3.73 3.73 Total: -1.00 -31.51 247.75 -7.23 -38.74 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -2.08 Total: 0.53 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: -3.09 Total: -17.06 kcal Atomic # 7 Polarization: -21.36 SS G_CDS: 0.65 Total: -20.71 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: 0.08 Total: -16.60 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.25 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -1.50 Total: -2.88 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -31.51 -7.23 -38.74 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041206554.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.239 kcal (2) G-P(sol) polarization free energy of solvation -31.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds