Wall clock time and date at job start Mon Mar 30 2020 02:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20829 * 119.99876 * 2 1 4 4 O 1.34284 * 120.00104 * 180.02562 * 2 1 3 5 5 C 1.35715 * 117.00092 * 175.23374 * 4 2 1 6 6 C 1.38380 * 120.17837 * 265.67258 * 5 4 2 7 7 C 1.38284 * 120.20295 * 179.97438 * 6 5 4 8 8 C 1.39057 * 120.56333 * 0.02562 * 7 6 5 9 9 F 1.35092 * 119.82381 * 180.02562 * 8 7 6 10 10 C 1.37671 * 120.34723 * 359.73439 * 8 7 6 11 11 C 1.40720 * 119.78679 * 0.51693 * 10 8 7 12 12 C 1.41149 * 120.27142 * 179.76300 * 11 10 8 13 13 H 1.08003 * 119.99861 * 209.09162 * 12 11 10 14 14 C 1.39950 * 120.00090 * 29.37184 * 12 11 10 15 15 N 1.30845 * 120.00030 * 12.23468 * 14 12 11 16 16 Si 1.86799 * 120.00077 * 192.23084 * 14 12 11 17 17 H 1.48505 * 109.46798 * 89.99933 * 16 14 12 18 18 H 1.48494 * 109.47529 * 210.00064 * 16 14 12 19 19 H 1.48505 * 109.47346 * 330.00176 * 16 14 12 20 20 H 1.09007 * 109.47057 * 269.99500 * 1 2 3 21 21 H 1.09001 * 109.47134 * 29.99609 * 1 2 3 22 22 H 1.09002 * 109.47464 * 150.00089 * 1 2 3 23 23 H 1.07999 * 119.89827 * 0.02562 * 6 5 4 24 24 H 1.08003 * 119.71906 * 180.02562 * 7 6 5 25 25 H 1.08007 * 120.10428 * 180.28249 * 10 8 7 26 26 H 0.96994 * 120.00036 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1111 1.0464 0.0000 4 8 2.1784 -1.1629 -0.0005 5 6 3.5301 -1.0939 -0.1010 6 6 4.1419 -1.1977 -1.3378 7 6 5.5191 -1.1269 -1.4408 8 6 6.3049 -0.9518 -0.3070 9 9 7.6489 -0.8841 -0.4249 10 6 5.7199 -0.8409 0.9343 11 6 4.3201 -0.9162 1.0568 12 6 3.7100 -0.8088 2.3250 13 1 2.7701 -1.3056 2.5159 14 6 4.3199 -0.0539 3.3333 15 7 5.3172 0.7416 3.0425 16 14 3.7101 -0.1818 5.0943 17 1 4.4505 -1.2602 5.7974 18 1 3.9362 1.1097 5.7916 19 1 2.2588 -0.4967 5.0941 20 1 -0.3633 -0.0001 1.0277 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3634 -0.8900 -0.5138 23 1 3.5419 -1.3335 -2.2255 24 1 5.9884 -1.2084 -2.4101 25 1 6.3338 -0.7004 1.8118 26 1 5.7402 1.2645 3.7414 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044368713.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:59 Heat of formation + Delta-G solvation = -113.457053 kcal Electronic energy + Delta-G solvation = -15100.094904 eV Core-core repulsion = 12251.216726 eV Total energy + Delta-G solvation = -2848.878178 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.064 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -47.73527 -40.00157 -37.22289 -35.45759 -33.80860 -30.14307 -29.87740 -28.20091 -25.53372 -22.09240 -21.55633 -19.77986 -17.73030 -17.06140 -16.15237 -15.94325 -15.61422 -14.86196 -14.39219 -14.37045 -13.52879 -13.05157 -12.81515 -12.51862 -12.38261 -11.88805 -11.78952 -11.64679 -11.30154 -10.78614 -10.64984 -10.45018 -10.23420 -9.68362 -9.38482 -9.36912 -7.70803 -7.36056 -6.91666 -4.63140 2.33468 2.61296 2.98215 3.01945 3.03762 3.06667 3.79867 3.85633 4.43118 5.27860 5.41752 5.54800 5.62643 5.71571 6.01844 6.09582 6.25973 6.74843 6.80254 7.01247 7.10853 7.33879 7.55133 7.64713 7.77455 7.98598 8.30424 8.52662 8.59895 8.97389 10.00059 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.017788 B = 0.015470 C = 0.008997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.710839 B = 1809.496067 C = 3111.399632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.438 3.562 3 O -0.496 6.496 4 O -0.279 6.279 5 C -0.055 4.055 6 C -0.060 4.060 7 C -0.266 4.266 8 C 0.108 3.892 9 F -0.163 7.163 10 C -0.184 4.184 11 C 0.134 3.866 12 C -0.442 4.442 13 H 0.086 0.914 14 C 0.073 3.927 15 N -0.779 5.779 16 Si 0.918 3.082 17 H -0.264 1.264 18 H -0.275 1.275 19 H -0.260 1.260 20 H 0.097 0.903 21 H 0.093 0.907 22 H 0.086 0.914 23 H 0.105 0.895 24 H 0.108 0.892 25 H 0.134 0.866 26 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.799 -2.331 -1.385 6.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.281 3.719 3 O -0.382 6.382 4 O -0.193 6.193 5 C -0.097 4.097 6 C -0.079 4.079 7 C -0.286 4.286 8 C 0.089 3.911 9 F -0.142 7.142 10 C -0.204 4.204 11 C 0.131 3.869 12 C -0.471 4.471 13 H 0.104 0.896 14 C -0.147 4.147 15 N -0.403 5.403 16 Si 0.741 3.259 17 H -0.189 1.189 18 H -0.200 1.200 19 H -0.184 1.184 20 H 0.116 0.884 21 H 0.111 0.889 22 H 0.105 0.895 23 H 0.123 0.877 24 H 0.126 0.874 25 H 0.152 0.848 26 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.386 -1.819 -1.264 5.824 hybrid contribution 0.094 0.234 0.738 0.780 sum -5.292 -1.585 -0.526 5.549 Atomic orbital electron populations 1.21534 0.88720 1.04664 1.05115 1.24166 0.91473 0.83156 0.73088 1.90666 1.70677 1.33070 1.43817 1.84538 1.19122 1.32978 1.82657 1.18363 0.79378 1.18906 0.93047 1.20344 0.93785 0.98664 0.95116 1.20104 0.93182 1.18841 0.96440 1.17713 0.75570 1.02624 0.95211 1.91343 1.31501 1.94302 1.97102 1.21180 0.95273 1.08795 0.95168 1.17395 0.90557 0.86951 0.92018 1.19520 1.06811 1.26038 0.94696 0.89618 1.26026 0.93925 0.93004 1.01755 1.69794 1.18093 1.16771 1.35607 0.86145 0.80444 0.78725 0.80541 1.18896 1.19969 1.18373 0.88438 0.88874 0.89485 0.87660 0.87392 0.84815 0.90270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 10.41 36.00 0.37 -1.57 15 2 C 0.44 9.18 7.81 36.00 0.28 9.46 15 3 O -0.50 -12.60 16.84 -18.75 -0.32 -12.91 15 4 O -0.28 -6.32 9.41 -23.02 -0.22 -6.54 15 5 C -0.05 -1.38 4.96 -38.37 -0.19 -1.57 15 6 C -0.06 -1.39 9.96 -39.51 -0.39 -1.79 15 7 C -0.27 -6.13 10.02 -39.26 -0.39 -6.52 15 8 C 0.11 2.70 7.28 -39.48 -0.29 2.41 15 9 F -0.16 -3.88 17.26 2.25 0.04 -3.84 15 10 C -0.18 -4.91 8.62 -38.85 -0.33 -5.25 15 11 C 0.13 3.63 5.54 -106.70 -0.59 3.04 15 12 C -0.44 -11.69 8.51 -37.84 -0.32 -12.01 15 13 H 0.09 2.18 7.71 -52.48 -0.40 1.77 15 14 C 0.07 1.83 5.22 -17.33 -0.09 1.74 15 15 N -0.78 -20.30 10.96 55.55 0.61 -19.69 15 16 Si 0.92 18.45 29.58 -169.99 -5.03 13.42 15 17 H -0.26 -5.17 7.11 56.52 0.40 -4.76 15 18 H -0.27 -5.42 7.11 56.52 0.40 -5.01 15 19 H -0.26 -5.12 7.11 56.52 0.40 -4.72 15 20 H 0.10 1.18 8.14 -51.93 -0.42 0.76 15 21 H 0.09 1.10 8.14 -51.93 -0.42 0.68 15 22 H 0.09 0.96 8.14 -51.93 -0.42 0.53 15 23 H 0.11 2.09 8.06 -52.49 -0.42 1.67 15 24 H 0.11 2.18 8.06 -52.48 -0.42 1.76 15 25 H 0.13 3.65 6.32 -52.48 -0.33 3.31 15 26 H 0.29 6.73 8.30 -40.82 -0.34 6.39 15 LS Contribution 246.57 15.07 3.72 3.72 Total: -1.00 -30.39 246.57 -5.13 -35.51 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -1.98 Total: 2.38 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -1.95 Total: -12.06 kcal Atomic # 7 Polarization: -20.30 SS G_CDS: 0.61 Total: -19.69 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.53 Total: -19.45 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.04 Total: -3.84 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.42 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -30.39 -5.13 -35.51 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368713.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.943 kcal (2) G-P(sol) polarization free energy of solvation -30.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds