Wall clock time and date at job start Mon Mar 30 2020 03:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81390 * 1 3 3 C 1.76205 * 103.00275 * 2 1 4 4 C 1.38918 * 120.02262 * 0.25279 * 3 2 1 5 5 C 1.38085 * 119.97718 * 180.25627 * 4 3 2 6 6 C 1.38716 * 120.02147 * 359.48783 * 5 4 3 7 7 O 1.36008 * 119.97557 * 180.27928 * 6 5 4 8 8 C 1.42898 * 116.99733 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.46840 * 180.02562 * 8 7 6 10 10 H 1.08007 * 120.00369 * 359.97438 * 9 8 7 11 11 C 1.37873 * 120.00207 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99992 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 120.00337 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46700 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47203 * 119.99385 * 13 11 9 16 16 H 1.48490 * 109.47036 * 239.99742 * 13 11 9 17 17 C 1.38713 * 120.05014 * 0.25614 * 6 5 4 18 18 C 1.38091 * 120.02280 * 0.02562 * 17 6 5 19 19 H 1.09001 * 109.47438 * 179.97438 * 1 2 3 20 20 H 1.08994 * 109.47579 * 300.00375 * 1 2 3 21 21 H 1.09007 * 109.47416 * 60.00068 * 1 2 3 22 22 H 1.08004 * 120.01476 * 0.02562 * 4 3 2 23 23 H 1.08002 * 119.99329 * 179.77220 * 5 4 3 24 24 H 1.08996 * 109.47479 * 299.99592 * 8 7 6 25 25 H 1.09004 * 109.47400 * 60.00451 * 8 7 6 26 26 H 0.97007 * 120.00406 * 180.02562 * 12 11 9 27 27 H 1.08004 * 119.98875 * 180.02562 * 17 6 5 28 28 H 1.07999 * 120.00834 * 180.02562 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1948 2.6647 0.0053 5 6 1.5065 4.0099 0.0000 6 6 2.8333 4.4149 0.0000 7 8 3.1392 5.7401 0.0005 8 6 4.5258 6.0857 -0.0001 9 6 4.6695 7.5859 0.0012 10 1 3.7899 8.2127 0.0019 11 6 5.9238 8.1583 0.0004 12 7 6.9949 7.3951 -0.0009 13 14 6.1020 10.0178 0.0013 14 1 4.7554 10.6440 0.0022 15 1 6.8469 10.4432 1.2134 16 1 6.8450 10.4444 -1.2115 17 6 3.8482 3.4693 0.0001 18 6 3.5386 2.1236 -0.0004 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 0.1618 2.3497 0.0099 23 1 0.7172 4.7471 0.0004 24 1 5.0031 5.6747 0.8895 25 1 5.0022 5.6755 -0.8905 26 1 7.8774 7.7978 -0.0011 27 1 4.8808 3.7858 0.0006 28 1 4.3290 1.3875 0.0000 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070159234.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:55 Heat of formation + Delta-G solvation = -24.448204 kcal Electronic energy + Delta-G solvation = -12472.611678 eV Core-core repulsion = 10193.806389 eV Total energy + Delta-G solvation = -2278.805289 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.35899 -36.68015 -32.96127 -30.97921 -29.99301 -28.68785 -27.47666 -23.55063 -22.23140 -21.27951 -17.82924 -16.89971 -16.52663 -15.36331 -14.67290 -14.62904 -14.47737 -14.33674 -13.82822 -13.26968 -12.91179 -12.78239 -12.32405 -11.99775 -11.49897 -11.11741 -10.99447 -10.73948 -10.41735 -10.22480 -10.13239 -9.30432 -8.81320 -8.73020 -8.44497 -6.91762 -6.27986 -4.31892 1.62196 1.64509 1.68669 2.52070 3.21130 3.27814 3.33622 4.06269 4.11602 4.47692 4.95518 4.96189 5.09370 5.13510 5.15300 5.51092 5.63684 5.75323 5.92681 6.27192 6.43095 6.56933 6.68547 6.92617 7.10122 7.10153 7.64699 7.91422 8.40679 8.80502 9.33571 10.83279 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.085452 B = 0.004978 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 327.591946 B = 5623.625529 C = 5930.771080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.140 6.140 3 C -0.144 4.144 4 C -0.093 4.093 5 C -0.153 4.153 6 C 0.155 3.845 7 O -0.315 6.315 8 C 0.191 3.809 9 C -0.525 4.525 10 H 0.071 0.929 11 C 0.060 3.940 12 N -0.894 5.894 13 Si 0.914 3.086 14 H -0.269 1.269 15 H -0.280 1.280 16 H -0.281 1.281 17 C -0.195 4.195 18 C -0.055 4.055 19 H 0.102 0.898 20 H 0.081 0.919 21 H 0.081 0.919 22 H 0.122 0.878 23 H 0.129 0.871 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.267 0.733 27 H 0.140 0.860 28 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.981 -11.693 0.007 15.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.099 5.901 3 C -0.256 4.256 4 C -0.116 4.116 5 C -0.174 4.174 6 C 0.105 3.895 7 O -0.228 6.228 8 C 0.118 3.882 9 C -0.562 4.562 10 H 0.089 0.911 11 C -0.142 4.142 12 N -0.532 5.532 13 Si 0.740 3.260 14 H -0.194 1.194 15 H -0.206 1.206 16 H -0.206 1.206 17 C -0.216 4.216 18 C -0.078 4.078 19 H 0.121 0.879 20 H 0.100 0.900 21 H 0.100 0.900 22 H 0.140 0.860 23 H 0.147 0.853 24 H 0.041 0.959 25 H 0.041 0.959 26 H 0.077 0.923 27 H 0.157 0.843 28 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.251 -12.524 0.006 15.570 hybrid contribution -0.313 1.916 0.000 1.942 sum -9.563 -10.608 0.007 14.282 Atomic orbital electron populations 1.23580 0.95278 1.06508 1.05465 1.85201 1.05964 1.04725 1.94219 1.21271 0.96577 0.95397 1.12333 1.20816 0.97713 0.92169 1.00873 1.20311 0.94424 0.95321 1.07324 1.19305 0.93269 0.84967 0.91967 1.86157 1.32684 1.18154 1.85764 1.20692 0.73380 0.97107 0.96987 1.21008 0.93199 0.89808 1.52234 0.91061 1.24945 0.95089 0.99561 0.94642 1.69957 0.98132 1.35574 1.49539 0.86185 0.78453 0.83534 0.77802 1.19351 1.20630 1.20636 1.21432 1.00294 0.92607 1.07247 1.20503 0.94019 0.95364 0.97894 0.87897 0.89983 0.89985 0.85998 0.85268 0.95941 0.95940 0.92331 0.84261 0.85791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.15 101.05 0.92 -0.31 15 2 S -0.14 -1.78 22.56 -107.50 -2.43 -4.20 15 3 C -0.14 -2.23 6.11 -39.08 -0.24 -2.47 15 4 C -0.09 -1.39 9.36 -39.39 -0.37 -1.75 15 5 C -0.15 -2.65 9.98 -39.46 -0.39 -3.04 15 6 C 0.15 3.17 6.69 -39.23 -0.26 2.91 15 7 O -0.32 -7.62 10.12 -19.77 -0.20 -7.82 15 8 C 0.19 5.05 4.49 36.00 0.16 5.21 15 9 C -0.52 -14.93 9.43 -34.44 -0.32 -15.26 15 10 H 0.07 2.01 7.81 -52.48 -0.41 1.60 15 11 C 0.06 1.67 5.46 -17.82 -0.10 1.58 15 12 N -0.89 -25.79 13.29 55.43 0.74 -25.05 15 13 Si 0.91 21.18 29.54 -169.99 -5.02 16.16 15 14 H -0.27 -6.14 7.11 56.52 0.40 -5.73 15 15 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 16 H -0.28 -6.39 7.11 56.52 0.40 -5.98 15 17 C -0.20 -3.75 9.03 -39.46 -0.36 -4.11 15 18 C -0.05 -0.92 9.79 -39.39 -0.39 -1.30 15 19 H 0.10 0.70 8.14 -51.92 -0.42 0.28 15 20 H 0.08 0.68 7.73 -51.93 -0.40 0.28 15 21 H 0.08 0.68 7.76 -51.92 -0.40 0.28 15 22 H 0.12 1.44 5.87 -52.48 -0.31 1.14 15 23 H 0.13 2.02 8.06 -52.49 -0.42 1.60 15 24 H 0.02 0.62 7.66 -51.93 -0.40 0.22 15 25 H 0.02 0.62 7.66 -51.93 -0.40 0.22 15 26 H 0.27 7.19 8.31 -40.82 -0.34 6.85 15 27 H 0.14 2.77 6.29 -52.48 -0.33 2.44 15 28 H 0.12 1.83 8.06 -52.49 -0.42 1.41 15 LS Contribution 259.65 15.07 3.91 3.91 Total: -1.00 -29.54 259.65 -7.39 -36.93 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: -3.05 Total: -1.40 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: -1.34 Total: -18.54 kcal Atomic # 7 Polarization: -25.79 SS G_CDS: 0.74 Total: -25.05 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: -0.20 Total: -7.82 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.78 SS G_CDS: -2.43 Total: -4.20 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.54 -7.39 -36.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070159234.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.484 kcal (2) G-P(sol) polarization free energy of solvation -29.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds