Wall clock time and date at job start Mon Mar 30 2020 03:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81390 * 1 3 3 C 1.76205 * 103.00275 * 2 1 4 4 C 1.38918 * 120.02262 * 0.25279 * 3 2 1 5 5 C 1.38085 * 119.97718 * 180.25627 * 4 3 2 6 6 C 1.38716 * 120.02147 * 359.48783 * 5 4 3 7 7 O 1.36008 * 119.97557 * 180.27928 * 6 5 4 8 8 C 1.42898 * 116.99733 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.46840 * 180.02562 * 8 7 6 10 10 H 1.08007 * 120.00369 * 359.97438 * 9 8 7 11 11 C 1.37873 * 120.00207 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99992 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 120.00337 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46700 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47203 * 119.99385 * 13 11 9 16 16 H 1.48490 * 109.47036 * 239.99742 * 13 11 9 17 17 C 1.38713 * 120.05014 * 0.25614 * 6 5 4 18 18 C 1.38091 * 120.02280 * 0.02562 * 17 6 5 19 19 H 1.09001 * 109.47438 * 179.97438 * 1 2 3 20 20 H 1.08994 * 109.47579 * 300.00375 * 1 2 3 21 21 H 1.09007 * 109.47416 * 60.00068 * 1 2 3 22 22 H 1.08004 * 120.01476 * 0.02562 * 4 3 2 23 23 H 1.08002 * 119.99329 * 179.77220 * 5 4 3 24 24 H 1.08996 * 109.47479 * 299.99592 * 8 7 6 25 25 H 1.09004 * 109.47400 * 60.00451 * 8 7 6 26 26 H 0.97007 * 120.00406 * 180.02562 * 12 11 9 27 27 H 1.08004 * 119.98875 * 180.02562 * 17 6 5 28 28 H 1.07999 * 120.00834 * 180.02562 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1948 2.6647 0.0053 5 6 1.5065 4.0099 0.0000 6 6 2.8333 4.4149 0.0000 7 8 3.1392 5.7401 0.0005 8 6 4.5258 6.0857 -0.0001 9 6 4.6695 7.5859 0.0012 10 1 3.7899 8.2127 0.0019 11 6 5.9238 8.1583 0.0004 12 7 6.9949 7.3951 -0.0009 13 14 6.1020 10.0178 0.0013 14 1 4.7554 10.6440 0.0022 15 1 6.8469 10.4432 1.2134 16 1 6.8450 10.4444 -1.2115 17 6 3.8482 3.4693 0.0001 18 6 3.5386 2.1236 -0.0004 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 0.1618 2.3497 0.0099 23 1 0.7172 4.7471 0.0004 24 1 5.0031 5.6747 0.8895 25 1 5.0022 5.6755 -0.8905 26 1 7.8774 7.7978 -0.0011 27 1 4.8808 3.7858 0.0006 28 1 4.3290 1.3875 0.0000 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070159234.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:54 Heat of formation + Delta-G solvation = -41.627055 kcal Electronic energy + Delta-G solvation = -12473.356608 eV Core-core repulsion = 10193.806389 eV Total energy + Delta-G solvation = -2279.550220 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.89845 -38.27919 -35.08312 -32.29444 -31.43573 -29.62688 -29.39011 -25.46292 -23.63063 -22.86150 -19.37405 -18.60328 -18.18775 -17.05335 -16.51704 -16.28297 -15.69176 -15.65789 -14.71133 -14.62113 -14.49480 -13.93436 -13.75246 -13.50575 -13.02295 -12.91361 -12.71257 -12.39798 -12.19549 -11.95005 -11.38702 -11.15027 -10.77470 -10.09751 -9.97516 -8.41367 -8.12856 -6.55917 0.25663 0.29307 0.63887 1.38732 1.40199 1.54714 1.55418 2.25742 2.65850 2.70337 2.93485 3.80957 3.86643 4.22293 4.33693 4.34770 4.38084 4.53747 4.69126 4.90143 4.94035 4.94386 5.08212 5.21620 5.35940 5.50695 5.70258 5.81133 6.47211 6.74842 7.16245 8.71136 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.085452 B = 0.004978 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 327.591946 B = 5623.625529 C = 5930.771080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 S -0.146 6.146 3 C -0.138 4.138 4 C -0.084 4.084 5 C -0.149 4.149 6 C 0.109 3.891 7 O -0.335 6.335 8 C 0.210 3.790 9 C -0.557 4.557 10 H 0.067 0.933 11 C 0.010 3.990 12 N -0.926 5.926 13 Si 0.989 3.011 14 H -0.263 1.263 15 H -0.270 1.270 16 H -0.270 1.270 17 C -0.208 4.208 18 C -0.063 4.063 19 H 0.128 0.872 20 H 0.093 0.907 21 H 0.093 0.907 22 H 0.164 0.836 23 H 0.145 0.855 24 H 0.002 0.998 25 H 0.002 0.998 26 H 0.274 0.726 27 H 0.117 0.883 28 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.919 -12.481 0.010 17.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 S 0.093 5.907 3 C -0.250 4.250 4 C -0.107 4.107 5 C -0.169 4.169 6 C 0.060 3.940 7 O -0.249 6.249 8 C 0.137 3.863 9 C -0.595 4.595 10 H 0.086 0.914 11 C -0.189 4.189 12 N -0.564 5.564 13 Si 0.811 3.189 14 H -0.187 1.187 15 H -0.195 1.195 16 H -0.195 1.195 17 C -0.228 4.228 18 C -0.086 4.086 19 H 0.146 0.854 20 H 0.112 0.888 21 H 0.112 0.888 22 H 0.181 0.819 23 H 0.163 0.837 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.083 0.917 27 H 0.135 0.865 28 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.206 -13.357 0.010 17.435 hybrid contribution 0.162 1.888 -0.001 1.895 sum -11.044 -11.469 0.008 15.922 Atomic orbital electron populations 1.23783 0.91385 1.08625 1.06613 1.85333 1.10191 1.01545 1.93586 1.21655 0.96089 0.97845 1.09415 1.21241 0.99600 0.90807 0.99019 1.20596 0.93170 0.96963 1.06183 1.19703 0.95129 0.83600 0.95531 1.86069 1.30656 1.20779 1.87389 1.20204 0.74828 0.96310 0.94955 1.21352 0.93746 0.90783 1.53594 0.91428 1.25990 0.94349 1.05148 0.93432 1.70063 0.98821 1.37996 1.49533 0.85042 0.78766 0.76626 0.78418 1.18654 1.19477 1.19490 1.21345 0.99133 0.93951 1.08419 1.20679 0.95617 0.94368 0.97904 0.85355 0.88799 0.88811 0.81911 0.83699 0.98023 0.98024 0.91688 0.86504 0.84262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.15 113.37 1.04 -0.71 15 2 S -0.15 -3.26 22.56 -56.49 -1.27 -4.53 15 3 C -0.14 -4.00 6.11 22.59 0.14 -3.86 15 4 C -0.08 -2.28 9.36 22.40 0.21 -2.07 15 5 C -0.15 -5.03 9.98 22.35 0.22 -4.80 15 6 C 0.11 4.63 6.69 22.50 0.15 4.78 15 7 O -0.33 -17.12 10.12 -93.65 -0.95 -18.07 15 8 C 0.21 11.89 4.49 71.23 0.32 12.21 15 9 C -0.56 -32.96 9.43 25.60 0.24 -32.72 15 10 H 0.07 3.93 7.81 -2.91 -0.02 3.91 15 11 C 0.01 0.58 5.46 84.65 0.46 1.05 15 12 N -0.93 -54.80 13.29 21.45 0.28 -54.52 15 13 Si 0.99 43.63 29.54 68.60 2.03 45.66 15 14 H -0.26 -11.21 7.11 99.48 0.71 -10.50 15 15 H -0.27 -11.37 7.11 99.48 0.71 -10.66 15 16 H -0.27 -11.38 7.11 99.48 0.71 -10.67 15 17 C -0.21 -8.43 9.03 22.35 0.20 -8.23 15 18 C -0.06 -2.10 9.79 22.40 0.22 -1.88 15 19 H 0.13 1.10 8.14 -2.39 -0.02 1.08 15 20 H 0.09 1.07 7.73 -2.39 -0.02 1.05 15 21 H 0.09 1.07 7.76 -2.39 -0.02 1.05 15 22 H 0.16 3.07 5.87 -2.91 -0.02 3.06 15 23 H 0.15 4.33 8.06 -2.91 -0.02 4.31 15 24 H 0.00 0.12 7.66 -2.39 -0.02 0.10 15 25 H 0.00 0.12 7.66 -2.38 -0.02 0.10 15 26 H 0.27 14.94 8.31 -92.70 -0.77 14.17 15 27 H 0.12 5.14 6.29 -2.91 -0.02 5.12 15 28 H 0.14 4.11 8.06 -2.91 -0.02 4.08 15 Total: -1.00 -65.97 259.65 4.44 -61.53 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: 1.15 Total: 6.18 kcal Atomic # 6 Polarization: -39.45 SS G_CDS: 3.20 Total: -36.25 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: 0.28 Total: -54.52 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.95 Total: -18.07 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -3.26 SS G_CDS: -1.27 Total: -4.53 kcal Total: -65.97 4.44 -61.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070159234.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.899 kcal (2) G-P(sol) polarization free energy of solvation -65.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds