Wall clock time and date at job start Mon Mar 30 2020 03:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08992 * 109.47493 * 2 1 4 4 O 1.42895 * 109.47150 * 120.00245 * 2 1 3 5 5 C 1.50709 * 109.47094 * 239.99937 * 2 1 3 6 6 C 1.38346 * 119.90392 * 99.99955 * 5 2 1 7 7 C 1.38038 * 120.08277 * 179.97438 * 6 5 2 8 8 C 1.39105 * 119.91169 * 0.26084 * 7 6 5 9 9 S 1.76199 * 120.08977 * 179.74479 * 8 7 6 10 10 C 1.76205 * 99.99889 * 265.46738 * 9 8 7 11 11 H 1.07997 * 119.99956 * 5.10972 * 10 9 8 12 12 C 1.38724 * 119.99667 * 185.11931 * 10 9 8 13 13 N 1.31632 * 119.99851 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00403 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.46795 * 90.00459 * 14 12 10 16 16 H 1.48505 * 109.47162 * 210.00400 * 14 12 10 17 17 H 1.48501 * 109.47022 * 330.00633 * 14 12 10 18 18 C 1.39107 * 119.81665 * 359.50935 * 8 7 6 19 19 C 1.38032 * 119.90891 * 0.48819 * 18 8 7 20 20 H 1.08999 * 109.47248 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47149 * 300.00172 * 1 2 3 22 22 H 1.09005 * 109.46879 * 59.99806 * 1 2 3 23 23 H 0.96701 * 114.00255 * 300.00179 * 4 2 1 24 24 H 1.07992 * 119.95718 * 359.97438 * 6 5 2 25 25 H 1.08002 * 120.04137 * 179.97438 * 7 6 5 26 26 H 0.96995 * 120.00464 * 179.97438 * 13 12 10 27 27 H 1.08006 * 120.04462 * 180.23380 * 18 8 7 28 28 H 1.07995 * 119.95661 * 179.76872 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0323 -0.7105 -1.2305 6 6 2.4586 0.0219 -2.3241 7 6 2.9199 -0.6250 -3.4529 8 6 2.9507 -2.0152 -3.4918 9 16 3.5323 -2.8458 -4.9328 10 6 2.0031 -3.1288 -5.7611 11 1 1.0873 -2.7227 -5.3576 12 6 1.9755 -3.8732 -6.9313 13 7 0.8332 -4.0842 -7.5504 14 14 3.5596 -4.5752 -7.6294 15 1 3.7910 -5.9298 -7.0666 16 1 3.4520 -4.6651 -9.1078 17 1 4.6951 -3.6887 -7.2687 18 6 2.5257 -2.7476 -2.3882 19 6 2.0659 -2.0931 -1.2633 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.7210 -0.2702 1.9979 24 1 2.4303 1.1011 -2.2946 25 1 3.2521 -0.0526 -4.3064 26 1 0.8139 -4.6044 -8.3688 27 1 2.5516 -3.8271 -2.4131 28 1 1.7322 -2.6610 -0.4075 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070621175.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:57 Heat of formation + Delta-G solvation = -38.506511 kcal Electronic energy + Delta-G solvation = -12566.796285 eV Core-core repulsion = 10287.381382 eV Total energy + Delta-G solvation = -2279.414903 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.08509 -36.81194 -32.47930 -32.00121 -30.49521 -28.91827 -25.65909 -23.78997 -22.22286 -20.65400 -17.94825 -17.19188 -16.50436 -15.38440 -14.95699 -14.86074 -13.97902 -13.86208 -13.11299 -12.93330 -12.87975 -12.55236 -12.26263 -11.91029 -11.34520 -11.15386 -11.06905 -10.71207 -10.40155 -10.12918 -9.87153 -9.08691 -9.03349 -8.45465 -7.92820 -7.08548 -6.31243 -4.05445 1.59553 1.90159 2.96022 3.27295 3.40500 3.55060 4.01311 4.26116 4.30071 4.83968 4.95401 5.03471 5.07547 5.13123 5.37320 5.46697 5.64110 5.66015 5.97132 6.03061 6.12176 6.23878 6.49983 6.73007 6.91003 7.04573 7.37791 7.57531 7.93264 8.46704 9.13050 10.78287 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.055432 B = 0.006457 C = 0.006258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.998575 B = 4335.248243 C = 4473.330775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.146 3.854 3 H 0.060 0.940 4 O -0.562 6.562 5 C -0.089 4.089 6 C -0.123 4.123 7 C -0.081 4.081 8 C -0.072 4.072 9 S -0.123 6.123 10 C -0.505 4.505 11 H 0.090 0.910 12 C 0.094 3.906 13 N -0.878 5.878 14 Si 0.858 3.142 15 H -0.266 1.266 16 H -0.273 1.273 17 H -0.239 1.239 18 C -0.083 4.083 19 C -0.104 4.104 20 H 0.066 0.934 21 H 0.057 0.943 22 H 0.068 0.932 23 H 0.375 0.625 24 H 0.118 0.882 25 H 0.128 0.872 26 H 0.271 0.729 27 H 0.127 0.873 28 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.583 7.733 13.367 15.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.087 3.913 3 H 0.078 0.922 4 O -0.368 6.368 5 C -0.090 4.090 6 C -0.143 4.143 7 C -0.102 4.102 8 C -0.182 4.182 9 S 0.111 5.889 10 C -0.652 4.652 11 H 0.108 0.892 12 C -0.115 4.115 13 N -0.515 5.515 14 Si 0.683 3.317 15 H -0.191 1.191 16 H -0.199 1.199 17 H -0.163 1.163 18 C -0.104 4.104 19 C -0.123 4.123 20 H 0.085 0.915 21 H 0.076 0.924 22 H 0.087 0.913 23 H 0.221 0.779 24 H 0.136 0.864 25 H 0.146 0.854 26 H 0.081 0.919 27 H 0.145 0.855 28 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.835 6.950 12.372 14.472 hybrid contribution -1.136 0.286 0.290 1.207 sum 1.699 7.237 12.662 14.683 Atomic orbital electron populations 1.22495 0.95733 1.03277 1.02310 1.20525 0.92693 0.94138 0.83911 0.92169 1.86593 1.76951 1.57611 1.15606 1.19527 1.01146 0.94149 0.94136 1.20847 1.00789 0.99094 0.93572 1.21561 0.97438 0.93815 0.97377 1.22185 1.01455 0.95836 0.98750 1.82992 1.15843 1.74381 1.15700 1.22246 0.91868 1.39443 1.11673 0.89180 1.24749 0.96626 0.94553 0.95552 1.69930 1.24948 1.38535 1.18072 0.86719 0.84394 0.81331 0.79231 1.19130 1.19861 1.16328 1.21711 0.96364 1.00187 0.92135 1.20893 0.99961 0.93700 0.97795 0.91494 0.92378 0.91264 0.77874 0.86425 0.85372 0.91871 0.85489 0.86111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.90 9.51 37.16 0.35 -1.54 15 2 C 0.15 1.75 3.78 -27.88 -0.11 1.65 15 3 H 0.06 0.62 8.00 -51.93 -0.42 0.21 15 4 O -0.56 -6.60 12.64 -35.23 -0.45 -7.04 15 5 C -0.09 -1.41 4.98 -104.54 -0.52 -1.93 15 6 C -0.12 -1.99 9.66 -39.62 -0.38 -2.37 15 7 C -0.08 -1.55 9.80 -39.33 -0.39 -1.94 15 8 C -0.07 -1.56 5.46 -38.94 -0.21 -1.77 15 9 S -0.12 -3.06 19.38 -107.50 -2.08 -5.14 15 10 C -0.51 -14.71 10.01 30.91 0.31 -14.40 15 11 H 0.09 2.85 8.02 -52.49 -0.42 2.43 15 12 C 0.09 2.72 5.50 -17.46 -0.10 2.63 15 13 N -0.88 -26.53 13.97 55.49 0.78 -25.75 15 14 Si 0.86 21.21 27.73 -169.99 -4.71 16.50 15 15 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 15 17 H -0.24 -5.76 6.74 56.52 0.38 -5.38 15 18 C -0.08 -1.66 9.80 -39.33 -0.39 -2.05 15 19 C -0.10 -1.80 9.34 -39.62 -0.37 -2.17 15 20 H 0.07 0.78 8.14 -51.93 -0.42 0.36 15 21 H 0.06 0.46 8.14 -51.93 -0.42 0.03 15 22 H 0.07 0.74 8.14 -51.93 -0.42 0.32 15 23 H 0.37 2.48 9.08 45.56 0.41 2.90 15 24 H 0.12 1.52 8.03 -52.49 -0.42 1.10 15 25 H 0.13 2.33 8.06 -52.49 -0.42 1.91 15 26 H 0.27 7.58 8.31 -40.82 -0.34 7.24 15 27 H 0.13 2.48 8.06 -52.48 -0.42 2.06 15 28 H 0.12 1.91 7.77 -52.49 -0.41 1.50 15 LS Contribution 262.27 15.07 3.95 3.95 Total: -1.00 -32.11 262.27 -6.83 -38.94 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -2.52 Total: 2.45 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: -1.80 Total: -23.90 kcal Atomic # 7 Polarization: -26.53 SS G_CDS: 0.78 Total: -25.75 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.45 Total: -7.04 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.71 Total: 16.50 kcal Atomic # 16 Polarization: -3.06 SS G_CDS: -2.08 Total: -5.14 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -32.11 -6.83 -38.94 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070621175.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.435 kcal (2) G-P(sol) polarization free energy of solvation -32.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds