Wall clock time and date at job start Mon Mar 30 2020 03:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08992 * 109.47493 * 2 1 4 4 O 1.42895 * 109.47150 * 120.00245 * 2 1 3 5 5 C 1.50709 * 109.47094 * 239.99937 * 2 1 3 6 6 C 1.38346 * 119.90392 * 99.99955 * 5 2 1 7 7 C 1.38038 * 120.08277 * 179.97438 * 6 5 2 8 8 C 1.39105 * 119.91169 * 0.26084 * 7 6 5 9 9 S 1.76199 * 120.08977 * 179.74479 * 8 7 6 10 10 C 1.76205 * 99.99889 * 265.46738 * 9 8 7 11 11 H 1.07997 * 119.99956 * 5.10972 * 10 9 8 12 12 C 1.38724 * 119.99667 * 185.11931 * 10 9 8 13 13 N 1.31632 * 119.99851 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00403 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.46795 * 90.00459 * 14 12 10 16 16 H 1.48505 * 109.47162 * 210.00400 * 14 12 10 17 17 H 1.48501 * 109.47022 * 330.00633 * 14 12 10 18 18 C 1.39107 * 119.81665 * 359.50935 * 8 7 6 19 19 C 1.38032 * 119.90891 * 0.48819 * 18 8 7 20 20 H 1.08999 * 109.47248 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47149 * 300.00172 * 1 2 3 22 22 H 1.09005 * 109.46879 * 59.99806 * 1 2 3 23 23 H 0.96701 * 114.00255 * 300.00179 * 4 2 1 24 24 H 1.07992 * 119.95718 * 359.97438 * 6 5 2 25 25 H 1.08002 * 120.04137 * 179.97438 * 7 6 5 26 26 H 0.96995 * 120.00464 * 179.97438 * 13 12 10 27 27 H 1.08006 * 120.04462 * 180.23380 * 18 8 7 28 28 H 1.07995 * 119.95661 * 179.76872 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0323 -0.7105 -1.2305 6 6 2.4586 0.0219 -2.3241 7 6 2.9199 -0.6250 -3.4529 8 6 2.9507 -2.0152 -3.4918 9 16 3.5323 -2.8458 -4.9328 10 6 2.0031 -3.1288 -5.7611 11 1 1.0873 -2.7227 -5.3576 12 6 1.9755 -3.8732 -6.9313 13 7 0.8332 -4.0842 -7.5504 14 14 3.5596 -4.5752 -7.6294 15 1 3.7910 -5.9298 -7.0666 16 1 3.4520 -4.6651 -9.1078 17 1 4.6951 -3.6887 -7.2687 18 6 2.5257 -2.7476 -2.3882 19 6 2.0659 -2.0931 -1.2633 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.7210 -0.2702 1.9979 24 1 2.4303 1.1011 -2.2946 25 1 3.2521 -0.0526 -4.3064 26 1 0.8139 -4.6044 -8.3688 27 1 2.5516 -3.8271 -2.4131 28 1 1.7322 -2.6610 -0.4075 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070621175.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:57 Heat of formation + Delta-G solvation = -60.783361 kcal Electronic energy + Delta-G solvation = -12567.762282 eV Core-core repulsion = 10287.381382 eV Total energy + Delta-G solvation = -2280.380900 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.36243 -37.84514 -34.71707 -33.13557 -31.91799 -30.03825 -27.91413 -24.94505 -23.63379 -21.88895 -19.98832 -18.13203 -18.06345 -17.12357 -16.66674 -15.99827 -15.27953 -15.08742 -14.98211 -14.44871 -14.31746 -13.84994 -13.50519 -13.22442 -13.08010 -12.99174 -12.50954 -12.10030 -11.94164 -11.67139 -11.21903 -11.09452 -10.85492 -9.88468 -9.52199 -9.13085 -8.53722 -6.27641 0.12298 0.46812 1.09140 1.31027 1.45152 1.72222 2.21959 2.51735 2.84034 2.96007 3.33680 3.85095 3.96796 4.09286 4.22746 4.31333 4.51475 4.59338 4.79096 4.89092 4.89951 5.11061 5.26554 5.33633 5.53363 5.58282 5.69232 5.98034 6.10050 6.88696 6.96210 8.59970 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.055432 B = 0.006457 C = 0.006258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.998575 B = 4335.248243 C = 4473.330775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.149 3.851 3 H 0.089 0.911 4 O -0.580 6.580 5 C -0.082 4.082 6 C -0.115 4.115 7 C -0.092 4.092 8 C -0.111 4.111 9 S -0.121 6.121 10 C -0.523 4.523 11 H 0.044 0.956 12 C 0.041 3.959 13 N -0.920 5.920 14 Si 0.924 3.076 15 H -0.259 1.259 16 H -0.258 1.258 17 H -0.230 1.230 18 C -0.099 4.099 19 C -0.107 4.107 20 H 0.049 0.951 21 H 0.090 0.910 22 H 0.065 0.935 23 H 0.399 0.601 24 H 0.160 0.840 25 H 0.131 0.869 26 H 0.278 0.722 27 H 0.118 0.882 28 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.379 9.202 15.073 17.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.091 3.909 3 H 0.107 0.893 4 O -0.389 6.389 5 C -0.082 4.082 6 C -0.135 4.135 7 C -0.112 4.112 8 C -0.222 4.222 9 S 0.113 5.887 10 C -0.670 4.670 11 H 0.062 0.938 12 C -0.164 4.164 13 N -0.558 5.558 14 Si 0.744 3.256 15 H -0.183 1.183 16 H -0.183 1.183 17 H -0.153 1.153 18 C -0.120 4.120 19 C -0.127 4.127 20 H 0.068 0.932 21 H 0.109 0.891 22 H 0.084 0.916 23 H 0.249 0.751 24 H 0.177 0.823 25 H 0.149 0.851 26 H 0.088 0.912 27 H 0.136 0.864 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.622 8.434 14.109 16.832 hybrid contribution -1.493 -0.052 -0.031 1.494 sum 2.130 8.382 14.078 16.522 Atomic orbital electron populations 1.22476 0.94571 1.02681 1.03812 1.20546 0.93364 0.94599 0.82405 0.89324 1.86528 1.77267 1.58408 1.16701 1.20121 0.98571 0.93696 0.95807 1.21239 0.98889 1.01148 0.92179 1.21710 0.97831 0.92794 0.98893 1.22162 1.05084 0.97087 0.97839 1.82550 1.13465 1.75249 1.17431 1.22365 0.92669 1.39383 1.12549 0.93757 1.25731 1.00327 0.94673 0.95667 1.70034 1.27421 1.39504 1.18857 0.85742 0.79971 0.80757 0.79087 1.18302 1.18259 1.15318 1.21719 0.97320 1.00028 0.92912 1.21082 0.99510 0.94905 0.97184 0.93166 0.89113 0.91607 0.75071 0.82288 0.85061 0.91245 0.86358 0.84630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.10 9.51 71.98 0.68 -2.41 15 2 C 0.15 2.98 3.78 29.85 0.11 3.09 15 3 H 0.09 1.34 8.00 -2.39 -0.02 1.32 15 4 O -0.58 -11.37 12.64 -148.98 -1.88 -13.25 15 5 C -0.08 -2.37 4.98 -19.81 -0.10 -2.47 15 6 C -0.12 -3.41 9.66 22.25 0.21 -3.20 15 7 C -0.09 -3.46 9.80 22.43 0.22 -3.25 15 8 C -0.11 -4.93 5.46 22.69 0.12 -4.80 15 9 S -0.12 -6.13 19.38 -56.49 -1.09 -7.22 15 10 C -0.52 -31.71 10.01 67.94 0.68 -31.03 15 11 H 0.04 2.98 8.02 -2.91 -0.02 2.96 15 12 C 0.04 2.43 5.50 84.84 0.47 2.90 15 13 N -0.92 -57.21 13.97 21.64 0.30 -56.91 15 14 Si 0.92 44.14 27.73 68.60 1.90 46.04 15 15 H -0.26 -11.96 7.11 99.48 0.71 -11.25 15 16 H -0.26 -11.59 7.11 99.48 0.71 -10.89 15 17 H -0.23 -10.54 6.74 99.48 0.67 -9.87 15 18 C -0.10 -4.04 9.80 22.43 0.22 -3.82 15 19 C -0.11 -3.62 9.34 22.25 0.21 -3.41 15 20 H 0.05 1.05 8.14 -2.39 -0.02 1.03 15 21 H 0.09 1.01 8.14 -2.39 -0.02 0.99 15 22 H 0.06 1.20 8.14 -2.38 -0.02 1.18 15 23 H 0.40 3.55 9.08 -74.06 -0.67 2.88 15 24 H 0.16 3.38 8.03 -2.91 -0.02 3.36 15 25 H 0.13 4.75 8.06 -2.91 -0.02 4.72 15 26 H 0.28 15.84 8.31 -92.71 -0.77 15.07 15 27 H 0.12 4.85 8.06 -2.91 -0.02 4.82 15 28 H 0.14 4.11 7.77 -2.91 -0.02 4.09 15 Total: -1.00 -71.84 262.27 2.51 -69.33 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: 0.45 Total: 10.40 kcal Atomic # 6 Polarization: -51.23 SS G_CDS: 2.83 Total: -48.40 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: 0.30 Total: -56.91 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: -1.88 Total: -13.25 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.90 Total: 46.04 kcal Atomic # 16 Polarization: -6.13 SS G_CDS: -1.09 Total: -7.22 kcal Total: -71.84 2.51 -69.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070621175.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.550 kcal (2) G-P(sol) polarization free energy of solvation -71.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds