Wall clock time and date at job start Mon Mar 30 2020 02:56:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42907 * 1
3 3 C 1.35936 * 116.99538 * 2 1
4 4 C 1.39060 * 119.94614 * 0.02800 * 3 2 1
5 5 C 1.38210 * 120.30824 * 179.97438 * 4 3 2
6 6 C 1.38258 * 120.17729 * 0.02562 * 5 4 3
7 7 F 1.35098 * 120.05830 * 180.27245 * 6 5 4
8 8 C 1.40065 * 119.87860 * 359.97438 * 6 5 4
9 9 C 1.47679 * 120.14778 * 180.02562 * 8 6 5
10 10 O 1.21793 * 119.99965 * 359.97438 * 9 8 6
11 11 C 1.41801 * 119.99970 * 180.02562 * 9 8 6
12 12 H 1.08000 * 119.99588 * 359.97438 * 11 9 8
13 13 C 1.40337 * 120.00130 * 179.97438 * 11 9 8
14 14 N 1.30536 * 119.99721 * 0.02562 * 13 11 9
15 15 Si 1.86797 * 120.00027 * 179.97438 * 13 11 9
16 16 H 1.48493 * 109.47054 * 90.00313 * 15 13 11
17 17 H 1.48503 * 109.46951 * 210.00466 * 15 13 11
18 18 H 1.48505 * 109.47022 * 329.99987 * 15 13 11
19 19 C 1.38249 * 119.93307 * 180.02562 * 3 2 1
20 20 H 1.09002 * 109.47063 * 179.97438 * 1 2 3
21 21 H 1.09006 * 109.46892 * 299.99664 * 1 2 3
22 22 H 1.08999 * 109.46911 * 59.99524 * 1 2 3
23 23 H 1.08008 * 119.84489 * 359.97041 * 4 3 2
24 24 H 1.07990 * 119.90949 * 180.02562 * 5 4 3
25 25 H 0.97006 * 119.99635 * 180.02562 * 14 13 11
26 26 H 1.07994 * 120.09506 * 0.05128 * 19 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0461 1.2112 0.0000
4 6 1.2875 2.3767 0.0006
5 6 1.9071 3.6122 0.0011
6 6 3.2870 3.6976 0.0005
7 9 3.8901 4.9065 0.0066
8 6 4.0585 2.5286 0.0000
9 6 5.5329 2.6130 -0.0001
10 8 6.0806 3.7008 -0.0001
11 6 6.3109 1.4275 -0.0012
12 1 5.8251 0.4629 -0.0017
13 6 7.7120 1.5076 -0.0018
14 7 8.2990 2.6735 -0.0008
15 14 8.7368 -0.0542 -0.0026
16 1 9.0078 -0.4676 -1.4028
17 1 10.0224 0.1971 0.6970
18 1 7.9949 -1.1334 0.6975
19 6 3.4268 1.2821 -0.0005
20 1 -0.3633 -1.0277 -0.0005
21 1 -0.3633 0.5138 0.8901
22 1 -0.3633 0.5139 -0.8899
23 1 0.2092 2.3162 0.0006
24 1 1.3117 4.5131 0.0020
25 1 9.2675 2.7289 -0.0016
26 1 4.0155 0.3767 -0.0018
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000075903691.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:56:56
Heat of formation + Delta-G solvation = -99.432260 kcal
Electronic energy + Delta-G solvation = -14767.631088 eV
Core-core repulsion = 11919.361070 eV
Total energy + Delta-G solvation = -2848.270018 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 224.064 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-47.84247 -39.61525 -37.29245 -35.78762 -32.71541 -30.95678 -29.18672 -27.22664
-26.55895 -23.05374 -21.88646 -19.88581 -17.59874 -16.76828 -16.28826 -15.98936
-15.55298 -15.20661 -14.60397 -14.20297 -13.79299 -13.36361 -13.05060 -12.43938
-12.29799 -12.09305 -11.76745 -11.70277 -11.37782 -11.05539 -10.55088 -10.41996
-10.37546 -10.22812 -9.02670 -8.36689 -7.54436 -7.52186 -6.34807 -4.95249
1.53550 1.80284 3.04546 3.12303 3.16146 3.51842 3.85508 3.98611
4.51699 4.92575 5.04998 5.19884 5.23858 5.31138 5.48948 5.70989
5.71535 5.88768 6.19658 6.38323 6.63680 6.67443 6.96129 7.18074
7.31806 7.73480 7.98828 8.72668 8.74864 10.25647 10.46931
Molecular weight = 224.06amu
Principal moments of inertia in cm(-1)
A = 0.028940 B = 0.009217 C = 0.007017
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 967.298893 B = 3037.261389 C = 3989.415074
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 O -0.318 6.318
3 C 0.096 3.904
4 C -0.191 4.191
5 C -0.135 4.135
6 C 0.088 3.912
7 F -0.124 7.124
8 C -0.100 4.100
9 C 0.381 3.619
10 O -0.525 6.525
11 C -0.510 4.510
12 H 0.077 0.923
13 C 0.078 3.922
14 N -0.731 5.731
15 Si 0.909 3.091
16 H -0.268 1.268
17 H -0.276 1.276
18 H -0.260 1.260
19 C -0.097 4.097
20 H 0.095 0.905
21 H 0.052 0.948
22 H 0.051 0.949
23 H 0.127 0.873
24 H 0.129 0.871
25 H 0.276 0.724
26 H 0.147 0.853
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.850 -4.999 -0.002 12.861
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.232 6.232
3 C 0.051 3.949
4 C -0.210 4.210
5 C -0.154 4.154
6 C 0.068 3.932
7 F -0.103 7.103
8 C -0.102 4.102
9 C 0.276 3.724
10 O -0.414 6.414
11 C -0.541 4.541
12 H 0.095 0.905
13 C -0.146 4.146
14 N -0.360 5.360
15 Si 0.733 3.267
16 H -0.193 1.193
17 H -0.201 1.201
18 H -0.184 1.184
19 C -0.116 4.116
20 H 0.113 0.887
21 H 0.070 0.930
22 H 0.070 0.930
23 H 0.145 0.855
24 H 0.147 0.853
25 H 0.087 0.913
26 H 0.164 0.836
Dipole moment (debyes) X Y Z Total
from point charges -11.355 -4.471 0.004 12.204
hybrid contribution 0.095 -0.476 -0.009 0.486
sum -11.260 -4.947 -0.005 12.299
Atomic orbital electron populations
1.22972 0.79286 1.03359 1.01019 1.86081 1.20625 1.27051 1.89420
1.19011 0.92404 0.83840 0.99615 1.20938 0.99401 0.91532 1.09106
1.20765 0.92731 0.98158 1.03766 1.17940 0.90026 0.81213 1.04017
1.91519 1.83924 1.41312 1.93511 1.22045 1.00678 0.90324 0.97130
1.18045 0.83015 0.90838 0.80458 1.90574 1.72033 1.30383 1.48368
1.20932 0.91600 0.94796 1.46741 0.90478 1.26017 0.98638 0.97150
0.92795 1.69967 1.10773 1.25137 1.30100 0.86318 0.79162 0.81936
0.79275 1.19300 1.20105 1.18366 1.20720 0.90340 0.98669 1.01875
0.88691 0.92987 0.92993 0.85492 0.85304 0.91325 0.83584
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.30 9.81 101.05 0.99 1.29 15
2 O -0.32 -4.94 10.49 -19.54 -0.21 -5.14 15
3 C 0.10 1.70 6.68 -39.27 -0.26 1.43 15
4 C -0.19 -3.03 9.04 -39.29 -0.36 -3.38 15
5 C -0.14 -2.39 10.01 -39.58 -0.40 -2.79 15
6 C 0.09 1.99 7.29 -38.89 -0.28 1.70 15
7 F -0.12 -3.09 15.55 2.25 0.04 -3.06 15
8 C -0.10 -2.42 5.89 -104.79 -0.62 -3.04 15
9 C 0.38 11.06 6.91 -34.37 -0.24 10.83 15
10 O -0.53 -17.17 13.88 5.11 0.07 -17.10 15
11 C -0.51 -14.06 8.86 -37.43 -0.33 -14.39 15
12 H 0.08 1.91 6.02 -52.49 -0.32 1.60 15
13 C 0.08 2.09 5.50 -17.31 -0.10 1.99 15
14 N -0.73 -21.14 11.73 55.57 0.65 -20.49 15
15 Si 0.91 19.20 29.56 -169.99 -5.03 14.18 15
16 H -0.27 -5.52 7.11 56.52 0.40 -5.12 15
17 H -0.28 -5.68 7.11 56.52 0.40 -5.28 15
18 H -0.26 -5.30 7.11 56.52 0.40 -4.90 15
19 C -0.10 -2.02 9.37 -39.01 -0.37 -2.39 15
20 H 0.09 0.74 8.14 -51.93 -0.42 0.32 15
21 H 0.05 0.48 7.66 -51.93 -0.40 0.08 15
22 H 0.05 0.48 7.66 -51.93 -0.40 0.08 15
23 H 0.13 1.53 6.28 -52.48 -0.33 1.20 15
24 H 0.13 1.88 8.06 -52.49 -0.42 1.46 15
25 H 0.28 7.11 8.29 -40.82 -0.34 6.77 15
26 H 0.15 2.97 6.20 -52.49 -0.33 2.64 15
LS Contribution 240.19 15.07 3.62 3.62
Total: -1.00 -33.34 240.19 -4.55 -37.89
By element:
Atomic # 1 Polarization: 0.59 SS G_CDS: -1.75 Total: -1.16 kcal
Atomic # 6 Polarization: -6.79 SS G_CDS: -1.95 Total: -8.74 kcal
Atomic # 7 Polarization: -21.14 SS G_CDS: 0.65 Total: -20.49 kcal
Atomic # 8 Polarization: -22.11 SS G_CDS: -0.13 Total: -22.24 kcal
Atomic # 9 Polarization: -3.09 SS G_CDS: 0.04 Total: -3.06 kcal
Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.18 kcal
Total LS contribution 3.62 Total: 3.62 kcal
Total: -33.34 -4.55 -37.89 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000075903691.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -61.539 kcal
(2) G-P(sol) polarization free energy of solvation -33.342 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.882 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.551 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.893 kcal
(6) G-S(sol) free energy of system = (1) + (5) -99.432 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds