Wall clock time and date at job start Mon Mar 30 2020 02:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35936 * 116.99538 * 2 1 4 4 C 1.39060 * 119.94614 * 0.02800 * 3 2 1 5 5 C 1.38210 * 120.30824 * 179.97438 * 4 3 2 6 6 C 1.38258 * 120.17729 * 0.02562 * 5 4 3 7 7 F 1.35098 * 120.05830 * 180.27245 * 6 5 4 8 8 C 1.40065 * 119.87860 * 359.97438 * 6 5 4 9 9 C 1.47679 * 120.14778 * 180.02562 * 8 6 5 10 10 O 1.21793 * 119.99965 * 359.97438 * 9 8 6 11 11 C 1.41801 * 119.99970 * 180.02562 * 9 8 6 12 12 H 1.08000 * 119.99588 * 359.97438 * 11 9 8 13 13 C 1.40337 * 120.00130 * 179.97438 * 11 9 8 14 14 N 1.30536 * 119.99721 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00027 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47054 * 90.00313 * 15 13 11 17 17 H 1.48503 * 109.46951 * 210.00466 * 15 13 11 18 18 H 1.48505 * 109.47022 * 329.99987 * 15 13 11 19 19 C 1.38249 * 119.93307 * 180.02562 * 3 2 1 20 20 H 1.09002 * 109.47063 * 179.97438 * 1 2 3 21 21 H 1.09006 * 109.46892 * 299.99664 * 1 2 3 22 22 H 1.08999 * 109.46911 * 59.99524 * 1 2 3 23 23 H 1.08008 * 119.84489 * 359.97041 * 4 3 2 24 24 H 1.07990 * 119.90949 * 180.02562 * 5 4 3 25 25 H 0.97006 * 119.99635 * 180.02562 * 14 13 11 26 26 H 1.07994 * 120.09506 * 0.05128 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2875 2.3767 0.0006 5 6 1.9071 3.6122 0.0011 6 6 3.2870 3.6976 0.0005 7 9 3.8901 4.9065 0.0066 8 6 4.0585 2.5286 0.0000 9 6 5.5329 2.6130 -0.0001 10 8 6.0806 3.7008 -0.0001 11 6 6.3109 1.4275 -0.0012 12 1 5.8251 0.4629 -0.0017 13 6 7.7120 1.5076 -0.0018 14 7 8.2990 2.6735 -0.0008 15 14 8.7368 -0.0542 -0.0026 16 1 9.0078 -0.4676 -1.4028 17 1 10.0224 0.1971 0.6970 18 1 7.9949 -1.1334 0.6975 19 6 3.4268 1.2821 -0.0005 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 0.2092 2.3162 0.0006 24 1 1.3117 4.5131 0.0020 25 1 9.2675 2.7289 -0.0016 26 1 4.0155 0.3767 -0.0018 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075903691.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:56 Heat of formation + Delta-G solvation = -99.432260 kcal Electronic energy + Delta-G solvation = -14767.631088 eV Core-core repulsion = 11919.361070 eV Total energy + Delta-G solvation = -2848.270018 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.064 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -47.84247 -39.61525 -37.29245 -35.78762 -32.71541 -30.95678 -29.18672 -27.22664 -26.55895 -23.05374 -21.88646 -19.88581 -17.59874 -16.76828 -16.28826 -15.98936 -15.55298 -15.20661 -14.60397 -14.20297 -13.79299 -13.36361 -13.05060 -12.43938 -12.29799 -12.09305 -11.76745 -11.70277 -11.37782 -11.05539 -10.55088 -10.41996 -10.37546 -10.22812 -9.02670 -8.36689 -7.54436 -7.52186 -6.34807 -4.95249 1.53550 1.80284 3.04546 3.12303 3.16146 3.51842 3.85508 3.98611 4.51699 4.92575 5.04998 5.19884 5.23858 5.31138 5.48948 5.70989 5.71535 5.88768 6.19658 6.38323 6.63680 6.67443 6.96129 7.18074 7.31806 7.73480 7.98828 8.72668 8.74864 10.25647 10.46931 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.028940 B = 0.009217 C = 0.007017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.298893 B = 3037.261389 C = 3989.415074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.318 6.318 3 C 0.096 3.904 4 C -0.191 4.191 5 C -0.135 4.135 6 C 0.088 3.912 7 F -0.124 7.124 8 C -0.100 4.100 9 C 0.381 3.619 10 O -0.525 6.525 11 C -0.510 4.510 12 H 0.077 0.923 13 C 0.078 3.922 14 N -0.731 5.731 15 Si 0.909 3.091 16 H -0.268 1.268 17 H -0.276 1.276 18 H -0.260 1.260 19 C -0.097 4.097 20 H 0.095 0.905 21 H 0.052 0.948 22 H 0.051 0.949 23 H 0.127 0.873 24 H 0.129 0.871 25 H 0.276 0.724 26 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.850 -4.999 -0.002 12.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.051 3.949 4 C -0.210 4.210 5 C -0.154 4.154 6 C 0.068 3.932 7 F -0.103 7.103 8 C -0.102 4.102 9 C 0.276 3.724 10 O -0.414 6.414 11 C -0.541 4.541 12 H 0.095 0.905 13 C -0.146 4.146 14 N -0.360 5.360 15 Si 0.733 3.267 16 H -0.193 1.193 17 H -0.201 1.201 18 H -0.184 1.184 19 C -0.116 4.116 20 H 0.113 0.887 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.145 0.855 24 H 0.147 0.853 25 H 0.087 0.913 26 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.355 -4.471 0.004 12.204 hybrid contribution 0.095 -0.476 -0.009 0.486 sum -11.260 -4.947 -0.005 12.299 Atomic orbital electron populations 1.22972 0.79286 1.03359 1.01019 1.86081 1.20625 1.27051 1.89420 1.19011 0.92404 0.83840 0.99615 1.20938 0.99401 0.91532 1.09106 1.20765 0.92731 0.98158 1.03766 1.17940 0.90026 0.81213 1.04017 1.91519 1.83924 1.41312 1.93511 1.22045 1.00678 0.90324 0.97130 1.18045 0.83015 0.90838 0.80458 1.90574 1.72033 1.30383 1.48368 1.20932 0.91600 0.94796 1.46741 0.90478 1.26017 0.98638 0.97150 0.92795 1.69967 1.10773 1.25137 1.30100 0.86318 0.79162 0.81936 0.79275 1.19300 1.20105 1.18366 1.20720 0.90340 0.98669 1.01875 0.88691 0.92987 0.92993 0.85492 0.85304 0.91325 0.83584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 15 2 O -0.32 -4.94 10.49 -19.54 -0.21 -5.14 15 3 C 0.10 1.70 6.68 -39.27 -0.26 1.43 15 4 C -0.19 -3.03 9.04 -39.29 -0.36 -3.38 15 5 C -0.14 -2.39 10.01 -39.58 -0.40 -2.79 15 6 C 0.09 1.99 7.29 -38.89 -0.28 1.70 15 7 F -0.12 -3.09 15.55 2.25 0.04 -3.06 15 8 C -0.10 -2.42 5.89 -104.79 -0.62 -3.04 15 9 C 0.38 11.06 6.91 -34.37 -0.24 10.83 15 10 O -0.53 -17.17 13.88 5.11 0.07 -17.10 15 11 C -0.51 -14.06 8.86 -37.43 -0.33 -14.39 15 12 H 0.08 1.91 6.02 -52.49 -0.32 1.60 15 13 C 0.08 2.09 5.50 -17.31 -0.10 1.99 15 14 N -0.73 -21.14 11.73 55.57 0.65 -20.49 15 15 Si 0.91 19.20 29.56 -169.99 -5.03 14.18 15 16 H -0.27 -5.52 7.11 56.52 0.40 -5.12 15 17 H -0.28 -5.68 7.11 56.52 0.40 -5.28 15 18 H -0.26 -5.30 7.11 56.52 0.40 -4.90 15 19 C -0.10 -2.02 9.37 -39.01 -0.37 -2.39 15 20 H 0.09 0.74 8.14 -51.93 -0.42 0.32 15 21 H 0.05 0.48 7.66 -51.93 -0.40 0.08 15 22 H 0.05 0.48 7.66 -51.93 -0.40 0.08 15 23 H 0.13 1.53 6.28 -52.48 -0.33 1.20 15 24 H 0.13 1.88 8.06 -52.49 -0.42 1.46 15 25 H 0.28 7.11 8.29 -40.82 -0.34 6.77 15 26 H 0.15 2.97 6.20 -52.49 -0.33 2.64 15 LS Contribution 240.19 15.07 3.62 3.62 Total: -1.00 -33.34 240.19 -4.55 -37.89 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: -1.75 Total: -1.16 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -1.95 Total: -8.74 kcal Atomic # 7 Polarization: -21.14 SS G_CDS: 0.65 Total: -20.49 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.13 Total: -22.24 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.04 Total: -3.06 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -33.34 -4.55 -37.89 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075903691.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.539 kcal (2) G-P(sol) polarization free energy of solvation -33.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds