Wall clock time and date at job start Mon Mar 30 2020 02:56:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42907 * 1
3 3 C 1.35936 * 116.99538 * 2 1
4 4 C 1.39060 * 119.94614 * 0.02800 * 3 2 1
5 5 C 1.38210 * 120.30824 * 179.97438 * 4 3 2
6 6 C 1.38258 * 120.17729 * 0.02562 * 5 4 3
7 7 F 1.35098 * 120.05830 * 180.27245 * 6 5 4
8 8 C 1.40065 * 119.87860 * 359.97438 * 6 5 4
9 9 C 1.47679 * 120.14778 * 180.02562 * 8 6 5
10 10 O 1.21793 * 119.99965 * 359.97438 * 9 8 6
11 11 C 1.41801 * 119.99970 * 180.02562 * 9 8 6
12 12 H 1.08000 * 119.99588 * 359.97438 * 11 9 8
13 13 C 1.40337 * 120.00130 * 179.97438 * 11 9 8
14 14 N 1.30536 * 119.99721 * 0.02562 * 13 11 9
15 15 Si 1.86797 * 120.00027 * 179.97438 * 13 11 9
16 16 H 1.48493 * 109.47054 * 90.00313 * 15 13 11
17 17 H 1.48503 * 109.46951 * 210.00466 * 15 13 11
18 18 H 1.48505 * 109.47022 * 329.99987 * 15 13 11
19 19 C 1.38249 * 119.93307 * 180.02562 * 3 2 1
20 20 H 1.09002 * 109.47063 * 179.97438 * 1 2 3
21 21 H 1.09006 * 109.46892 * 299.99664 * 1 2 3
22 22 H 1.08999 * 109.46911 * 59.99524 * 1 2 3
23 23 H 1.08008 * 119.84489 * 359.97041 * 4 3 2
24 24 H 1.07990 * 119.90949 * 180.02562 * 5 4 3
25 25 H 0.97006 * 119.99635 * 180.02562 * 14 13 11
26 26 H 1.07994 * 120.09506 * 0.05128 * 19 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0461 1.2112 0.0000
4 6 1.2875 2.3767 0.0006
5 6 1.9071 3.6122 0.0011
6 6 3.2870 3.6976 0.0005
7 9 3.8901 4.9065 0.0066
8 6 4.0585 2.5286 0.0000
9 6 5.5329 2.6130 -0.0001
10 8 6.0806 3.7008 -0.0001
11 6 6.3109 1.4275 -0.0012
12 1 5.8251 0.4629 -0.0017
13 6 7.7120 1.5076 -0.0018
14 7 8.2990 2.6735 -0.0008
15 14 8.7368 -0.0542 -0.0026
16 1 9.0078 -0.4676 -1.4028
17 1 10.0224 0.1971 0.6970
18 1 7.9949 -1.1334 0.6975
19 6 3.4268 1.2821 -0.0005
20 1 -0.3633 -1.0277 -0.0005
21 1 -0.3633 0.5138 0.8901
22 1 -0.3633 0.5139 -0.8899
23 1 0.2092 2.3162 0.0006
24 1 1.3117 4.5131 0.0020
25 1 9.2675 2.7289 -0.0016
26 1 4.0155 0.3767 -0.0018
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000075903691.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:56:56
Heat of formation + Delta-G solvation = -122.819259 kcal
Electronic energy + Delta-G solvation = -14768.645224 eV
Core-core repulsion = 11919.361070 eV
Total energy + Delta-G solvation = -2849.284154 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 224.064 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-49.61888 -40.97294 -39.08201 -37.49932 -34.82776 -32.56603 -30.62772 -28.97452
-27.86840 -24.70748 -23.47961 -21.61984 -19.12322 -18.51308 -18.02876 -17.56245
-17.02807 -16.72735 -16.25451 -15.62272 -15.39847 -15.04411 -14.84775 -14.26985
-13.85862 -13.60874 -13.35725 -13.15811 -12.81936 -12.73913 -12.41874 -12.05904
-11.80491 -11.71777 -11.02655 -9.98877 -9.67191 -9.03781 -8.39447 -7.14239
-0.05648 0.28397 1.37586 1.37905 1.55866 2.12414 2.19692 2.37201
2.68301 3.45684 3.60900 3.74835 3.91510 4.13477 4.32431 4.49808
4.50643 4.66939 4.80758 4.92795 5.11367 5.13701 5.22574 5.36786
5.74969 5.90493 6.45895 6.63466 6.67560 8.16842 8.43404
Molecular weight = 224.06amu
Principal moments of inertia in cm(-1)
A = 0.028940 B = 0.009217 C = 0.007017
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 967.298893 B = 3037.261389 C = 3989.415074
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.013 3.987
2 O -0.330 6.330
3 C 0.111 3.889
4 C -0.164 4.164
5 C -0.115 4.115
6 C 0.048 3.952
7 F -0.150 7.150
8 C -0.139 4.139
9 C 0.354 3.646
10 O -0.584 6.584
11 C -0.536 4.536
12 H 0.098 0.902
13 C 0.020 3.980
14 N -0.785 5.785
15 Si 1.001 2.999
16 H -0.256 1.256
17 H -0.267 1.267
18 H -0.244 1.244
19 C -0.108 4.108
20 H 0.121 0.879
21 H 0.070 0.930
22 H 0.070 0.930
23 H 0.182 0.818
24 H 0.167 0.833
25 H 0.284 0.716
26 H 0.141 0.859
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.621 -7.398 0.001 16.386
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.081 4.081
2 O -0.244 6.244
3 C 0.065 3.935
4 C -0.183 4.183
5 C -0.134 4.134
6 C 0.029 3.971
7 F -0.129 7.129
8 C -0.141 4.141
9 C 0.253 3.747
10 O -0.478 6.478
11 C -0.566 4.566
12 H 0.116 0.884
13 C -0.199 4.199
14 N -0.414 5.414
15 Si 0.818 3.182
16 H -0.181 1.181
17 H -0.192 1.192
18 H -0.167 1.167
19 C -0.127 4.127
20 H 0.139 0.861
21 H 0.088 0.912
22 H 0.088 0.912
23 H 0.199 0.801
24 H 0.185 0.815
25 H 0.095 0.905
26 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges -14.174 -6.893 0.007 15.761
hybrid contribution 0.720 0.198 -0.012 0.747
sum -13.453 -6.696 -0.005 15.027
Atomic orbital electron populations
1.23454 0.75981 1.05907 1.02713 1.86088 1.23894 1.25666 1.88729
1.18937 0.91358 0.85597 0.97569 1.21490 1.01810 0.89677 1.05292
1.21145 0.90414 1.00641 1.01168 1.18409 0.92102 0.79885 1.06754
1.91440 1.84800 1.42591 1.94058 1.21592 0.98468 0.92757 1.01325
1.18789 0.85851 0.90566 0.79460 1.90504 1.74079 1.32013 1.51225
1.21458 0.92800 0.95420 1.46897 0.88421 1.27356 0.99861 1.01458
0.91181 1.70119 1.11701 1.28564 1.31010 0.84977 0.76929 0.76320
0.79961 1.18056 1.19151 1.16692 1.20582 0.92339 0.96975 1.02845
0.86093 0.91166 0.91169 0.80099 0.81518 0.90535 0.84150
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.20 9.81 113.37 1.11 1.31 15
2 O -0.33 -8.95 10.49 -92.83 -0.97 -9.92 15
3 C 0.11 3.61 6.68 22.47 0.15 3.76 15
4 C -0.16 -4.45 9.04 22.46 0.20 -4.25 15
5 C -0.12 -3.76 10.01 22.27 0.22 -3.54 15
6 C 0.05 2.23 7.29 22.72 0.17 2.39 15
7 F -0.15 -7.90 15.55 44.97 0.70 -7.21 15
8 C -0.14 -7.07 5.89 -19.98 -0.12 -7.18 15
9 C 0.35 21.90 6.91 25.65 0.18 22.08 15
10 O -0.58 -41.23 13.88 -4.64 -0.06 -41.29 15
11 C -0.54 -30.85 8.86 23.66 0.21 -30.64 15
12 H 0.10 4.98 6.02 -2.91 -0.02 4.97 15
13 C 0.02 1.13 5.50 85.40 0.47 1.60 15
14 N -0.79 -47.69 11.73 21.89 0.26 -47.44 15
15 Si 1.00 39.77 29.56 68.60 2.03 41.80 15
16 H -0.26 -9.65 7.11 99.48 0.71 -8.94 15
17 H -0.27 -10.13 7.11 99.48 0.71 -9.42 15
18 H -0.24 -8.98 7.11 99.48 0.71 -8.27 15
19 C -0.11 -4.53 9.37 22.64 0.21 -4.32 15
20 H 0.12 1.23 8.14 -2.39 -0.02 1.21 15
21 H 0.07 0.84 7.66 -2.38 -0.02 0.82 15
22 H 0.07 0.84 7.66 -2.39 -0.02 0.82 15
23 H 0.18 3.01 6.28 -2.91 -0.02 2.99 15
24 H 0.17 4.15 8.06 -2.92 -0.02 4.13 15
25 H 0.28 15.32 8.29 -92.70 -0.77 14.55 15
26 H 0.14 5.81 6.20 -2.91 -0.02 5.79 15
Total: -1.00 -80.17 240.19 5.97 -74.20
By element:
Atomic # 1 Polarization: 7.44 SS G_CDS: 1.22 Total: 8.66 kcal
Atomic # 6 Polarization: -21.60 SS G_CDS: 2.80 Total: -18.80 kcal
Atomic # 7 Polarization: -47.69 SS G_CDS: 0.26 Total: -47.44 kcal
Atomic # 8 Polarization: -50.18 SS G_CDS: -1.04 Total: -51.22 kcal
Atomic # 9 Polarization: -7.90 SS G_CDS: 0.70 Total: -7.21 kcal
Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.80 kcal
Total: -80.17 5.97 -74.20 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000075903691.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -48.618 kcal
(2) G-P(sol) polarization free energy of solvation -80.171 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.788 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.969 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.202 kcal
(6) G-S(sol) free energy of system = (1) + (5) -122.819 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds