Wall clock time and date at job start Mon Mar 30 2020 02:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35936 * 116.99538 * 2 1 4 4 C 1.39060 * 119.94614 * 0.02800 * 3 2 1 5 5 C 1.38210 * 120.30824 * 179.97438 * 4 3 2 6 6 C 1.38258 * 120.17729 * 0.02562 * 5 4 3 7 7 F 1.35098 * 120.05830 * 180.27245 * 6 5 4 8 8 C 1.40065 * 119.87860 * 359.97438 * 6 5 4 9 9 C 1.47679 * 120.14778 * 180.02562 * 8 6 5 10 10 O 1.21793 * 119.99965 * 359.97438 * 9 8 6 11 11 C 1.41801 * 119.99970 * 180.02562 * 9 8 6 12 12 H 1.08000 * 119.99588 * 359.97438 * 11 9 8 13 13 C 1.40337 * 120.00130 * 179.97438 * 11 9 8 14 14 N 1.30536 * 119.99721 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00027 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47054 * 90.00313 * 15 13 11 17 17 H 1.48503 * 109.46951 * 210.00466 * 15 13 11 18 18 H 1.48505 * 109.47022 * 329.99987 * 15 13 11 19 19 C 1.38249 * 119.93307 * 180.02562 * 3 2 1 20 20 H 1.09002 * 109.47063 * 179.97438 * 1 2 3 21 21 H 1.09006 * 109.46892 * 299.99664 * 1 2 3 22 22 H 1.08999 * 109.46911 * 59.99524 * 1 2 3 23 23 H 1.08008 * 119.84489 * 359.97041 * 4 3 2 24 24 H 1.07990 * 119.90949 * 180.02562 * 5 4 3 25 25 H 0.97006 * 119.99635 * 180.02562 * 14 13 11 26 26 H 1.07994 * 120.09506 * 0.05128 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2875 2.3767 0.0006 5 6 1.9071 3.6122 0.0011 6 6 3.2870 3.6976 0.0005 7 9 3.8901 4.9065 0.0066 8 6 4.0585 2.5286 0.0000 9 6 5.5329 2.6130 -0.0001 10 8 6.0806 3.7008 -0.0001 11 6 6.3109 1.4275 -0.0012 12 1 5.8251 0.4629 -0.0017 13 6 7.7120 1.5076 -0.0018 14 7 8.2990 2.6735 -0.0008 15 14 8.7368 -0.0542 -0.0026 16 1 9.0078 -0.4676 -1.4028 17 1 10.0224 0.1971 0.6970 18 1 7.9949 -1.1334 0.6975 19 6 3.4268 1.2821 -0.0005 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 0.2092 2.3162 0.0006 24 1 1.3117 4.5131 0.0020 25 1 9.2675 2.7289 -0.0016 26 1 4.0155 0.3767 -0.0018 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075903691.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:56 Heat of formation + Delta-G solvation = -122.819259 kcal Electronic energy + Delta-G solvation = -14768.645224 eV Core-core repulsion = 11919.361070 eV Total energy + Delta-G solvation = -2849.284154 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.064 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.61888 -40.97294 -39.08201 -37.49932 -34.82776 -32.56603 -30.62772 -28.97452 -27.86840 -24.70748 -23.47961 -21.61984 -19.12322 -18.51308 -18.02876 -17.56245 -17.02807 -16.72735 -16.25451 -15.62272 -15.39847 -15.04411 -14.84775 -14.26985 -13.85862 -13.60874 -13.35725 -13.15811 -12.81936 -12.73913 -12.41874 -12.05904 -11.80491 -11.71777 -11.02655 -9.98877 -9.67191 -9.03781 -8.39447 -7.14239 -0.05648 0.28397 1.37586 1.37905 1.55866 2.12414 2.19692 2.37201 2.68301 3.45684 3.60900 3.74835 3.91510 4.13477 4.32431 4.49808 4.50643 4.66939 4.80758 4.92795 5.11367 5.13701 5.22574 5.36786 5.74969 5.90493 6.45895 6.63466 6.67560 8.16842 8.43404 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.028940 B = 0.009217 C = 0.007017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.298893 B = 3037.261389 C = 3989.415074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.330 6.330 3 C 0.111 3.889 4 C -0.164 4.164 5 C -0.115 4.115 6 C 0.048 3.952 7 F -0.150 7.150 8 C -0.139 4.139 9 C 0.354 3.646 10 O -0.584 6.584 11 C -0.536 4.536 12 H 0.098 0.902 13 C 0.020 3.980 14 N -0.785 5.785 15 Si 1.001 2.999 16 H -0.256 1.256 17 H -0.267 1.267 18 H -0.244 1.244 19 C -0.108 4.108 20 H 0.121 0.879 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.182 0.818 24 H 0.167 0.833 25 H 0.284 0.716 26 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.621 -7.398 0.001 16.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.244 6.244 3 C 0.065 3.935 4 C -0.183 4.183 5 C -0.134 4.134 6 C 0.029 3.971 7 F -0.129 7.129 8 C -0.141 4.141 9 C 0.253 3.747 10 O -0.478 6.478 11 C -0.566 4.566 12 H 0.116 0.884 13 C -0.199 4.199 14 N -0.414 5.414 15 Si 0.818 3.182 16 H -0.181 1.181 17 H -0.192 1.192 18 H -0.167 1.167 19 C -0.127 4.127 20 H 0.139 0.861 21 H 0.088 0.912 22 H 0.088 0.912 23 H 0.199 0.801 24 H 0.185 0.815 25 H 0.095 0.905 26 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.174 -6.893 0.007 15.761 hybrid contribution 0.720 0.198 -0.012 0.747 sum -13.453 -6.696 -0.005 15.027 Atomic orbital electron populations 1.23454 0.75981 1.05907 1.02713 1.86088 1.23894 1.25666 1.88729 1.18937 0.91358 0.85597 0.97569 1.21490 1.01810 0.89677 1.05292 1.21145 0.90414 1.00641 1.01168 1.18409 0.92102 0.79885 1.06754 1.91440 1.84800 1.42591 1.94058 1.21592 0.98468 0.92757 1.01325 1.18789 0.85851 0.90566 0.79460 1.90504 1.74079 1.32013 1.51225 1.21458 0.92800 0.95420 1.46897 0.88421 1.27356 0.99861 1.01458 0.91181 1.70119 1.11701 1.28564 1.31010 0.84977 0.76929 0.76320 0.79961 1.18056 1.19151 1.16692 1.20582 0.92339 0.96975 1.02845 0.86093 0.91166 0.91169 0.80099 0.81518 0.90535 0.84150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.81 113.37 1.11 1.31 15 2 O -0.33 -8.95 10.49 -92.83 -0.97 -9.92 15 3 C 0.11 3.61 6.68 22.47 0.15 3.76 15 4 C -0.16 -4.45 9.04 22.46 0.20 -4.25 15 5 C -0.12 -3.76 10.01 22.27 0.22 -3.54 15 6 C 0.05 2.23 7.29 22.72 0.17 2.39 15 7 F -0.15 -7.90 15.55 44.97 0.70 -7.21 15 8 C -0.14 -7.07 5.89 -19.98 -0.12 -7.18 15 9 C 0.35 21.90 6.91 25.65 0.18 22.08 15 10 O -0.58 -41.23 13.88 -4.64 -0.06 -41.29 15 11 C -0.54 -30.85 8.86 23.66 0.21 -30.64 15 12 H 0.10 4.98 6.02 -2.91 -0.02 4.97 15 13 C 0.02 1.13 5.50 85.40 0.47 1.60 15 14 N -0.79 -47.69 11.73 21.89 0.26 -47.44 15 15 Si 1.00 39.77 29.56 68.60 2.03 41.80 15 16 H -0.26 -9.65 7.11 99.48 0.71 -8.94 15 17 H -0.27 -10.13 7.11 99.48 0.71 -9.42 15 18 H -0.24 -8.98 7.11 99.48 0.71 -8.27 15 19 C -0.11 -4.53 9.37 22.64 0.21 -4.32 15 20 H 0.12 1.23 8.14 -2.39 -0.02 1.21 15 21 H 0.07 0.84 7.66 -2.38 -0.02 0.82 15 22 H 0.07 0.84 7.66 -2.39 -0.02 0.82 15 23 H 0.18 3.01 6.28 -2.91 -0.02 2.99 15 24 H 0.17 4.15 8.06 -2.92 -0.02 4.13 15 25 H 0.28 15.32 8.29 -92.70 -0.77 14.55 15 26 H 0.14 5.81 6.20 -2.91 -0.02 5.79 15 Total: -1.00 -80.17 240.19 5.97 -74.20 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: 1.22 Total: 8.66 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: 2.80 Total: -18.80 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: 0.26 Total: -47.44 kcal Atomic # 8 Polarization: -50.18 SS G_CDS: -1.04 Total: -51.22 kcal Atomic # 9 Polarization: -7.90 SS G_CDS: 0.70 Total: -7.21 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.80 kcal Total: -80.17 5.97 -74.20 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075903691.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.618 kcal (2) G-P(sol) polarization free energy of solvation -80.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds