Wall clock time and date at job start Mon Mar 30 2020 02:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00318 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00269 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00068 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 C 1.38265 * 120.00007 * 269.72641 * 11 10 9 13 13 C 1.38218 * 119.99800 * 179.80847 * 12 11 10 14 14 C 1.38252 * 120.00133 * 0.39855 * 13 12 11 15 15 C 1.38216 * 119.99908 * 359.85438 * 14 13 12 16 16 C 1.50697 * 120.00013 * 179.97438 * 15 14 13 17 17 O 1.42907 * 109.47480 * 269.98127 * 16 15 14 18 18 C 1.38207 * 120.00182 * 90.00126 * 11 10 9 19 19 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 20 20 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 21 21 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 22 22 H 1.07994 * 120.00027 * 359.97438 * 12 11 10 23 23 H 1.08000 * 119.99679 * 180.23033 * 13 12 11 24 24 H 1.07998 * 120.00067 * 179.83305 * 14 13 12 25 25 H 1.09002 * 109.47044 * 29.98373 * 16 15 14 26 26 H 1.09000 * 109.47524 * 149.97928 * 16 15 14 27 27 H 0.96697 * 113.99768 * 180.02562 * 17 16 15 28 28 H 1.08002 * 119.99805 * 359.97438 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4479 2.6527 0.7001 6 1 3.5480 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 6 1.7505 -5.9580 1.1726 13 6 1.2620 -7.2510 1.1664 14 6 1.0180 -7.8919 -0.0341 15 6 1.2596 -7.2386 -1.2279 16 6 0.9941 -7.9375 -2.5364 17 8 2.1719 -8.6309 -2.9537 18 6 1.7446 -5.9439 -1.2216 19 1 -0.4849 0.8401 0.0004 20 1 3.1244 -3.7267 -0.9039 21 1 3.1244 -3.7361 0.8761 22 1 1.9447 -5.4587 2.1103 23 1 1.0736 -7.7615 2.0992 24 1 0.6388 -8.9032 -0.0390 25 1 0.1789 -8.6498 -2.4090 26 1 0.7187 -7.2017 -3.2920 27 1 2.0736 -9.1043 -3.7911 28 1 1.9333 -5.4334 -2.1545 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076980341.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:06 Heat of formation + Delta-G solvation = -41.017085 kcal Electronic energy + Delta-G solvation = -12322.577012 eV Core-core repulsion = 10043.053242 eV Total energy + Delta-G solvation = -2279.523770 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.18955 -36.62583 -32.55665 -32.38881 -31.20240 -26.76431 -25.81141 -25.35910 -21.80679 -20.41701 -17.58882 -17.46599 -16.18659 -15.48119 -14.86305 -14.80978 -14.32206 -13.86149 -13.46902 -13.16237 -12.66153 -12.29953 -12.05882 -11.86165 -11.18421 -11.06866 -10.85101 -10.67324 -10.64281 -10.11051 -9.88877 -9.07734 -8.56746 -8.54208 -8.00848 -6.55079 -6.24512 -3.95359 1.55879 1.68775 3.21215 3.22111 3.28680 3.50892 4.07615 4.23197 4.55809 4.95623 5.05787 5.11620 5.19623 5.34450 5.36200 5.44362 5.59382 5.77070 5.85947 5.98517 6.25628 6.39176 6.51405 6.74404 6.81003 7.03218 7.30061 7.54778 7.59161 8.34908 9.21704 10.83440 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.048629 B = 0.005763 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.649901 B = 4857.106392 C = 5086.530804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.072 3.928 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.074 0.926 9 S -0.114 6.114 10 C -0.083 4.083 11 C -0.047 4.047 12 C -0.103 4.103 13 C -0.124 4.124 14 C -0.112 4.112 15 C -0.098 4.098 16 C 0.119 3.881 17 O -0.569 6.569 18 C -0.088 4.088 19 H 0.268 0.732 20 H 0.071 0.929 21 H 0.072 0.928 22 H 0.124 0.876 23 H 0.120 0.880 24 H 0.116 0.884 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.376 0.624 28 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.862 -14.172 -2.563 14.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.137 4.137 3 Si 0.745 3.255 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.670 4.670 8 H 0.092 0.908 9 S 0.116 5.884 10 C -0.231 4.231 11 C -0.048 4.048 12 C -0.122 4.122 13 C -0.142 4.142 14 C -0.131 4.131 15 C -0.099 4.099 16 C 0.042 3.958 17 O -0.374 6.374 18 C -0.108 4.108 19 H 0.077 0.923 20 H 0.090 0.910 21 H 0.090 0.910 22 H 0.142 0.858 23 H 0.138 0.862 24 H 0.134 0.866 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.222 0.778 28 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.809 -13.938 -2.001 14.104 hybrid contribution 1.532 1.122 -0.495 1.962 sum 2.341 -12.816 -2.496 13.265 Atomic orbital electron populations 1.70024 1.05936 1.27388 1.47166 1.25017 0.95079 0.99077 0.94534 0.86154 0.79456 0.81464 0.78388 1.20249 1.20744 1.19642 1.22757 0.94692 0.90868 1.58634 0.90827 1.84900 1.08210 0.98535 1.96781 1.22369 1.02641 0.94140 1.03917 1.19567 0.97618 0.94524 0.93072 1.21106 0.98714 0.94491 0.97929 1.21034 1.00377 0.95190 0.97637 1.20880 1.00991 0.99202 0.92048 1.19486 1.01990 0.94499 0.93887 1.20979 0.86866 0.94419 0.93519 1.86589 1.37082 1.69984 1.43744 1.20916 0.98006 0.93872 0.97988 0.92260 0.91012 0.90951 0.85836 0.86193 0.86595 0.92995 0.92634 0.77761 0.85968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.02 13.22 55.49 0.73 -25.29 15 2 C 0.07 2.05 5.49 -17.43 -0.10 1.95 15 3 Si 0.92 21.55 29.55 -169.99 -5.02 16.53 15 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 7 C -0.52 -14.98 9.50 30.94 0.29 -14.68 15 8 H 0.07 2.04 7.80 -52.49 -0.41 1.63 15 9 S -0.11 -3.03 21.42 -107.50 -2.30 -5.33 15 10 C -0.08 -1.76 5.80 36.00 0.21 -1.55 15 11 C -0.05 -0.87 5.13 -104.62 -0.54 -1.41 15 12 C -0.10 -1.72 9.70 -39.58 -0.38 -2.11 15 13 C -0.12 -1.80 10.05 -39.58 -0.40 -2.20 15 14 C -0.11 -1.59 9.70 -39.58 -0.38 -1.98 15 15 C -0.10 -1.50 5.51 -104.62 -0.58 -2.08 15 16 C 0.12 1.43 7.17 36.00 0.26 1.68 15 17 O -0.57 -6.79 13.64 -35.23 -0.48 -7.27 15 18 C -0.09 -1.53 9.36 -39.58 -0.37 -1.90 15 19 H 0.27 7.45 8.31 -40.82 -0.34 7.11 15 20 H 0.07 1.49 8.09 -51.92 -0.42 1.07 15 21 H 0.07 1.48 8.08 -51.92 -0.42 1.07 15 22 H 0.12 1.95 8.06 -52.49 -0.42 1.53 15 23 H 0.12 1.39 8.06 -52.49 -0.42 0.97 15 24 H 0.12 1.34 8.06 -52.49 -0.42 0.92 15 25 H 0.05 0.51 8.09 -51.93 -0.42 0.09 15 26 H 0.06 0.62 8.09 -51.93 -0.42 0.20 15 27 H 0.38 2.44 9.12 45.56 0.42 2.85 15 28 H 0.12 2.06 8.06 -52.49 -0.42 1.64 15 LS Contribution 266.38 15.07 4.01 4.01 Total: -1.00 -32.87 266.38 -7.54 -40.41 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -2.50 Total: 1.20 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: -1.98 Total: -24.26 kcal Atomic # 7 Polarization: -26.02 SS G_CDS: 0.73 Total: -25.29 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.48 Total: -7.27 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -3.03 SS G_CDS: -2.30 Total: -5.33 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -32.87 -7.54 -40.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076980341.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.608 kcal (2) G-P(sol) polarization free energy of solvation -32.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds