Wall clock time and date at job start Mon Mar 30 2020 03:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47160 * 2 1 4 4 O 1.42904 * 109.47088 * 240.00535 * 2 1 3 5 5 C 1.50698 * 109.47228 * 120.00432 * 2 1 3 6 6 C 1.38368 * 119.95276 * 84.72700 * 5 2 1 7 7 C 1.38328 * 120.18232 * 179.72774 * 6 5 2 8 8 C 1.38055 * 120.08664 * 0.54470 * 7 6 5 9 9 C 1.39090 * 119.91038 * 359.72646 * 8 7 6 10 10 S 1.76202 * 120.08757 * 179.97438 * 9 8 7 11 11 C 1.76198 * 99.99904 * 265.51221 * 10 9 8 12 12 H 1.07992 * 120.00289 * 5.11919 * 11 10 9 13 13 C 1.38728 * 119.99957 * 185.11809 * 11 10 9 14 14 N 1.31627 * 119.99750 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00121 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47361 * 90.00169 * 15 13 11 17 17 H 1.48504 * 109.46882 * 210.00258 * 15 13 11 18 18 H 1.48503 * 109.46956 * 329.99838 * 15 13 11 19 19 C 1.38013 * 119.95822 * 264.99969 * 5 2 1 20 20 H 1.09006 * 109.47588 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47194 * 299.99121 * 1 2 3 22 22 H 1.08999 * 109.47278 * 59.99538 * 1 2 3 23 23 H 0.96703 * 114.00068 * 299.99735 * 4 2 1 24 24 H 1.07995 * 119.91051 * 0.02562 * 6 5 2 25 25 H 1.07997 * 119.95610 * 180.25639 * 7 6 5 26 26 H 1.08008 * 120.04392 * 179.70795 * 8 7 6 27 27 H 0.97000 * 119.99999 * 180.02562 * 14 13 11 28 28 H 1.08000 * 120.04007 * 0.02562 * 19 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.0323 -0.7105 1.2304 6 6 2.1587 -2.0884 1.2293 7 6 2.6247 -2.7449 2.3541 8 6 2.9550 -2.0281 3.4868 9 6 2.8240 -0.6433 3.4940 10 16 3.2435 0.2762 4.9373 11 6 1.6578 0.3944 5.6964 12 1 0.8133 -0.1232 5.2662 13 6 1.4943 1.1522 6.8468 14 7 2.5236 1.7834 7.3709 15 14 -0.1866 1.2770 7.6520 16 1 -0.3409 0.1859 8.6474 17 1 -0.3127 2.5903 8.3336 18 1 -1.2425 1.1541 6.6151 19 6 2.3603 0.0135 2.3587 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 1.7210 -1.5952 -1.2331 24 1 1.8975 -2.6524 0.3461 25 1 2.7259 -3.8201 2.3478 26 1 3.3142 -2.5418 4.3663 27 1 2.4094 2.3130 8.1755 28 1 2.2568 1.0885 2.3603 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082761882.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:59 Heat of formation + Delta-G solvation = -41.308381 kcal Electronic energy + Delta-G solvation = -12671.892366 eV Core-core repulsion = 10392.355965 eV Total energy + Delta-G solvation = -2279.536401 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.19250 -36.68375 -32.51756 -31.86213 -30.35232 -28.96762 -25.57943 -23.69610 -22.24854 -20.81427 -17.99921 -17.20454 -15.66815 -15.56057 -15.07675 -14.86343 -14.01410 -13.88759 -13.29623 -13.13933 -12.91551 -12.05398 -11.96371 -11.49655 -11.42693 -11.14070 -11.11489 -10.78155 -10.67301 -10.11016 -9.85423 -9.16957 -8.91015 -8.35095 -7.93052 -6.70404 -6.29366 -4.02857 1.66972 1.82550 3.17595 3.19467 3.25849 3.48780 4.03509 4.22789 4.49302 4.81995 5.06674 5.10736 5.20920 5.35948 5.41437 5.49217 5.68590 5.87097 5.92441 6.00262 6.09323 6.31912 6.44584 6.79932 6.85289 7.06326 7.37423 7.56203 7.59661 8.31787 9.16037 10.77310 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.033798 B = 0.007553 C = 0.006906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.251590 B = 3706.100572 C = 4053.387959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.146 3.854 3 H 0.106 0.894 4 O -0.560 6.560 5 C -0.133 4.133 6 C -0.117 4.117 7 C -0.131 4.131 8 C -0.083 4.083 9 C -0.093 4.093 10 S -0.043 6.043 11 C -0.518 4.518 12 H 0.075 0.925 13 C 0.073 3.927 14 N -0.871 5.871 15 Si 0.921 3.079 16 H -0.276 1.276 17 H -0.281 1.281 18 H -0.272 1.272 19 C -0.073 4.073 20 H 0.057 0.943 21 H 0.071 0.929 22 H 0.063 0.937 23 H 0.371 0.629 24 H 0.111 0.889 25 H 0.117 0.883 26 H 0.126 0.874 27 H 0.269 0.731 28 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.999 -5.702 -11.256 12.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.087 3.913 3 H 0.124 0.876 4 O -0.366 6.366 5 C -0.135 4.135 6 C -0.135 4.135 7 C -0.151 4.151 8 C -0.104 4.104 9 C -0.204 4.204 10 S 0.191 5.809 11 C -0.665 4.665 12 H 0.093 0.907 13 C -0.136 4.136 14 N -0.506 5.506 15 Si 0.747 3.253 16 H -0.202 1.202 17 H -0.207 1.207 18 H -0.196 1.196 19 C -0.094 4.094 20 H 0.076 0.924 21 H 0.090 0.910 22 H 0.082 0.918 23 H 0.218 0.782 24 H 0.129 0.871 25 H 0.135 0.865 26 H 0.144 0.856 27 H 0.079 0.921 28 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.634 -4.547 -10.806 11.837 hybrid contribution -2.487 -0.961 0.311 2.684 sum -4.121 -5.507 -10.495 12.548 Atomic orbital electron populations 1.22477 0.95709 1.02621 1.02852 1.20775 0.92811 0.95979 0.81703 0.87589 1.86594 1.77471 1.28926 1.43635 1.20484 1.02196 0.94437 0.96370 1.20707 1.01235 0.93606 0.97969 1.21061 1.01030 0.99315 0.93652 1.21726 0.97511 0.93544 0.97632 1.22799 1.00354 0.96751 1.00510 1.83566 1.15420 1.67631 1.14303 1.22820 0.94397 1.35944 1.13362 0.90732 1.25002 0.98080 0.94348 0.96193 1.69996 1.29931 1.29838 1.20845 0.86128 0.82223 0.77751 0.79237 1.20171 1.20666 1.19637 1.21534 0.96361 0.99853 0.91611 0.92361 0.91046 0.91805 0.78171 0.87104 0.86512 0.85636 0.92094 0.85659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.10 9.52 37.16 0.35 -1.75 15 2 C 0.15 1.97 3.83 -27.89 -0.11 1.87 15 3 H 0.11 1.43 8.05 -51.93 -0.42 1.01 15 4 O -0.56 -7.22 13.14 -35.23 -0.46 -7.68 15 5 C -0.13 -2.14 5.00 -104.66 -0.52 -2.67 15 6 C -0.12 -1.73 9.33 -39.50 -0.37 -2.10 15 7 C -0.13 -2.07 10.04 -39.62 -0.40 -2.47 15 8 C -0.08 -1.59 9.80 -39.33 -0.39 -1.98 15 9 C -0.09 -2.04 5.46 -38.94 -0.21 -2.25 15 10 S -0.04 -1.13 21.41 -107.50 -2.30 -3.44 15 11 C -0.52 -14.60 9.46 30.91 0.29 -14.31 15 12 H 0.07 2.09 7.79 -52.49 -0.41 1.68 15 13 C 0.07 2.03 5.49 -17.46 -0.10 1.93 15 14 N -0.87 -25.40 13.22 55.49 0.73 -24.67 15 15 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 15 16 H -0.28 -6.26 7.11 56.52 0.40 -5.85 15 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 19 C -0.07 -1.41 9.43 -39.34 -0.37 -1.79 15 20 H 0.06 0.63 8.14 -51.93 -0.42 0.21 15 21 H 0.07 0.90 8.14 -51.93 -0.42 0.48 15 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 15 23 H 0.37 3.46 7.39 45.56 0.34 3.80 15 24 H 0.11 1.24 6.61 -52.49 -0.35 0.89 15 25 H 0.12 1.49 8.06 -52.49 -0.42 1.06 15 26 H 0.13 2.33 8.06 -52.48 -0.42 1.90 15 27 H 0.27 7.32 8.31 -40.82 -0.34 6.98 15 28 H 0.13 2.42 8.06 -52.49 -0.42 1.99 15 LS Contribution 262.75 15.07 3.96 3.96 Total: -1.00 -31.00 262.75 -7.42 -38.42 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -2.51 Total: 2.69 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: -1.81 Total: -25.50 kcal Atomic # 7 Polarization: -25.40 SS G_CDS: 0.73 Total: -24.67 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -0.46 Total: -7.68 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.13 SS G_CDS: -2.30 Total: -3.44 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.00 -7.42 -38.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082761882.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.890 kcal (2) G-P(sol) polarization free energy of solvation -30.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds