Wall clock time and date at job start Mon Mar 30 2020 03:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47160 * 2 1 4 4 O 1.42904 * 109.47088 * 240.00535 * 2 1 3 5 5 C 1.50698 * 109.47228 * 120.00432 * 2 1 3 6 6 C 1.38368 * 119.95276 * 84.72700 * 5 2 1 7 7 C 1.38328 * 120.18232 * 179.72774 * 6 5 2 8 8 C 1.38055 * 120.08664 * 0.54470 * 7 6 5 9 9 C 1.39090 * 119.91038 * 359.72646 * 8 7 6 10 10 S 1.76202 * 120.08757 * 179.97438 * 9 8 7 11 11 C 1.76198 * 99.99904 * 265.51221 * 10 9 8 12 12 H 1.07992 * 120.00289 * 5.11919 * 11 10 9 13 13 C 1.38728 * 119.99957 * 185.11809 * 11 10 9 14 14 N 1.31627 * 119.99750 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00121 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47361 * 90.00169 * 15 13 11 17 17 H 1.48504 * 109.46882 * 210.00258 * 15 13 11 18 18 H 1.48503 * 109.46956 * 329.99838 * 15 13 11 19 19 C 1.38013 * 119.95822 * 264.99969 * 5 2 1 20 20 H 1.09006 * 109.47588 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47194 * 299.99121 * 1 2 3 22 22 H 1.08999 * 109.47278 * 59.99538 * 1 2 3 23 23 H 0.96703 * 114.00068 * 299.99735 * 4 2 1 24 24 H 1.07995 * 119.91051 * 0.02562 * 6 5 2 25 25 H 1.07997 * 119.95610 * 180.25639 * 7 6 5 26 26 H 1.08008 * 120.04392 * 179.70795 * 8 7 6 27 27 H 0.97000 * 119.99999 * 180.02562 * 14 13 11 28 28 H 1.08000 * 120.04007 * 0.02562 * 19 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.0323 -0.7105 1.2304 6 6 2.1587 -2.0884 1.2293 7 6 2.6247 -2.7449 2.3541 8 6 2.9550 -2.0281 3.4868 9 6 2.8240 -0.6433 3.4940 10 16 3.2435 0.2762 4.9373 11 6 1.6578 0.3944 5.6964 12 1 0.8133 -0.1232 5.2662 13 6 1.4943 1.1522 6.8468 14 7 2.5236 1.7834 7.3709 15 14 -0.1866 1.2770 7.6520 16 1 -0.3409 0.1859 8.6474 17 1 -0.3127 2.5903 8.3336 18 1 -1.2425 1.1541 6.6151 19 6 2.3603 0.0135 2.3587 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 1.7210 -1.5952 -1.2331 24 1 1.8975 -2.6524 0.3461 25 1 2.7259 -3.8201 2.3478 26 1 3.3142 -2.5418 4.3663 27 1 2.4094 2.3130 8.1755 28 1 2.2568 1.0885 2.3603 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082761882.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:59 Heat of formation + Delta-G solvation = -61.888116 kcal Electronic energy + Delta-G solvation = -12672.784771 eV Core-core repulsion = 10392.355965 eV Total energy + Delta-G solvation = -2280.428805 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.46290 -37.83099 -34.65507 -33.02600 -31.74708 -30.12014 -27.74636 -24.85418 -23.64804 -22.09332 -19.86502 -18.61448 -16.93550 -16.90755 -16.74901 -16.55579 -15.38849 -15.13037 -14.80195 -14.45546 -14.28634 -13.50045 -13.21559 -12.98176 -12.95610 -12.91613 -12.66680 -12.40178 -11.85308 -11.69842 -11.28375 -11.14534 -10.65138 -9.73203 -9.55936 -8.80365 -8.38861 -6.19444 0.24412 0.43924 1.30600 1.37223 1.46865 1.71508 2.23897 2.72825 2.93612 3.42623 3.52326 3.64511 3.98466 4.12668 4.23290 4.28183 4.49390 4.60975 4.76948 4.84386 5.04384 5.08410 5.21431 5.36702 5.46471 5.53947 5.61251 6.03149 6.15706 6.79861 7.00806 8.68058 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.033798 B = 0.007553 C = 0.006906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.251590 B = 3706.100572 C = 4053.387959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.152 3.848 3 H 0.099 0.901 4 O -0.565 6.565 5 C -0.126 4.126 6 C -0.104 4.104 7 C -0.120 4.120 8 C -0.101 4.101 9 C -0.119 4.119 10 S -0.105 6.105 11 C -0.534 4.534 12 H 0.066 0.934 13 C 0.020 3.980 14 N -0.907 5.907 15 Si 0.994 3.006 16 H -0.266 1.266 17 H -0.271 1.271 18 H -0.265 1.265 19 C -0.092 4.092 20 H 0.072 0.928 21 H 0.055 0.945 22 H 0.080 0.920 23 H 0.388 0.612 24 H 0.162 0.838 25 H 0.157 0.843 26 H 0.120 0.880 27 H 0.274 0.726 28 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.718 -7.419 -13.207 15.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.093 3.907 3 H 0.117 0.883 4 O -0.374 6.374 5 C -0.129 4.129 6 C -0.121 4.121 7 C -0.139 4.139 8 C -0.122 4.122 9 C -0.230 4.230 10 S 0.130 5.870 11 C -0.681 4.681 12 H 0.085 0.915 13 C -0.185 4.185 14 N -0.544 5.544 15 Si 0.815 3.185 16 H -0.191 1.191 17 H -0.196 1.196 18 H -0.190 1.190 19 C -0.113 4.113 20 H 0.091 0.909 21 H 0.075 0.925 22 H 0.099 0.901 23 H 0.239 0.761 24 H 0.179 0.821 25 H 0.175 0.825 26 H 0.138 0.862 27 H 0.083 0.917 28 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.345 -6.280 -12.771 14.620 hybrid contribution -1.906 -0.531 0.749 2.115 sum -5.250 -6.812 -12.022 14.782 Atomic orbital electron populations 1.22420 0.94070 1.03643 1.02943 1.20674 0.93871 0.95462 0.80714 0.88328 1.86592 1.77659 1.30436 1.42673 1.20802 1.00723 0.95346 0.95980 1.21292 0.98568 0.93110 0.99165 1.21465 0.99016 1.01160 0.92269 1.21775 0.98605 0.92568 0.99272 1.22535 1.04006 0.97575 0.98928 1.83473 1.16160 1.69454 1.17963 1.23034 0.94709 1.36257 1.14121 0.91547 1.26014 1.02333 0.93632 0.96539 1.70119 1.32280 1.30531 1.21427 0.85025 0.76945 0.78271 0.78236 1.19133 1.19608 1.18964 1.21464 0.97715 0.99614 0.92534 0.90880 0.92550 0.90148 0.76114 0.82101 0.82494 0.86185 0.91714 0.87066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.56 9.52 71.98 0.68 -2.88 15 2 C 0.15 3.71 3.83 29.85 0.11 3.82 15 3 H 0.10 2.56 8.05 -2.39 -0.02 2.54 15 4 O -0.57 -12.29 13.14 -148.98 -1.96 -14.25 15 5 C -0.13 -3.81 5.00 -19.89 -0.10 -3.91 15 6 C -0.10 -2.62 9.33 22.32 0.21 -2.41 15 7 C -0.12 -3.38 10.04 22.25 0.22 -3.16 15 8 C -0.10 -3.86 9.80 22.43 0.22 -3.64 15 9 C -0.12 -5.36 5.46 22.69 0.12 -5.23 15 10 S -0.11 -5.79 21.41 -56.49 -1.21 -7.00 15 11 C -0.53 -31.27 9.46 67.94 0.64 -30.62 15 12 H 0.07 3.85 7.79 -2.91 -0.02 3.82 15 13 C 0.02 1.14 5.49 84.84 0.47 1.60 15 14 N -0.91 -54.51 13.22 21.64 0.29 -54.22 15 15 Si 0.99 44.02 29.55 68.60 2.03 46.05 15 16 H -0.27 -11.31 7.11 99.48 0.71 -10.60 15 17 H -0.27 -11.48 7.11 99.48 0.71 -10.78 15 18 H -0.27 -11.36 7.11 99.48 0.71 -10.65 15 19 C -0.09 -3.66 9.43 22.43 0.21 -3.45 15 20 H 0.07 1.28 8.14 -2.38 -0.02 1.26 15 21 H 0.06 1.34 8.14 -2.39 -0.02 1.32 15 22 H 0.08 1.40 8.14 -2.39 -0.02 1.38 15 23 H 0.39 5.13 7.39 -74.06 -0.55 4.58 15 24 H 0.16 2.50 6.61 -2.91 -0.02 2.48 15 25 H 0.16 3.20 8.06 -2.91 -0.02 3.17 15 26 H 0.12 4.55 8.06 -2.91 -0.02 4.53 15 27 H 0.27 15.21 8.31 -92.71 -0.77 14.44 15 28 H 0.11 4.56 8.06 -2.91 -0.02 4.53 15 Total: -1.00 -69.82 262.75 2.55 -67.27 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 0.61 Total: 12.03 kcal Atomic # 6 Polarization: -52.68 SS G_CDS: 2.80 Total: -49.88 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: 0.29 Total: -54.22 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -1.96 Total: -14.25 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: -5.79 SS G_CDS: -1.21 Total: -7.00 kcal Total: -69.82 2.55 -67.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082761882.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.380 kcal (2) G-P(sol) polarization free energy of solvation -69.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds