Wall clock time and date at job start Mon Mar 30 2020 03:02:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 C 1.38259 * 120.00222 * 2 1
4 4 C 1.38211 * 119.99788 * 180.30553 * 3 2 1
5 5 C 1.38256 * 120.00062 * 359.45940 * 4 3 2
6 6 C 1.38214 * 120.00160 * 0.26318 * 5 4 3
7 7 C 1.50700 * 120.00249 * 179.97438 * 6 5 4
8 8 S 1.81402 * 109.46841 * 90.00044 * 7 6 5
9 9 O 1.42095 * 109.47130 * 70.94737 * 8 7 6
10 10 C 1.76199 * 102.99868 * 180.02562 * 8 7 6
11 11 H 1.08000 * 119.99956 * 359.97438 * 10 8 7
12 12 C 1.37871 * 120.00095 * 179.97438 * 10 8 7
13 13 N 1.31514 * 120.00329 * 0.02562 * 12 10 8
14 14 Si 1.86802 * 120.00016 * 179.97438 * 12 10 8
15 15 H 1.48501 * 109.47204 * 90.00072 * 14 12 10
16 16 H 1.48499 * 109.47248 * 210.00230 * 14 12 10
17 17 H 1.48504 * 109.47249 * 330.00222 * 14 12 10
18 18 C 1.38212 * 119.99667 * 179.76960 * 2 1 3
19 19 H 1.09000 * 109.46767 * 270.23640 * 1 2 3
20 20 H 1.09004 * 109.47240 * 30.23147 * 1 2 3
21 21 H 1.08995 * 109.47480 * 150.23308 * 1 2 3
22 22 H 1.07998 * 119.99812 * 0.04290 * 3 2 1
23 23 H 1.08002 * 120.00200 * 179.74545 * 4 3 2
24 24 H 1.07999 * 120.00077 * 180.28382 * 5 4 3
25 25 H 1.08999 * 109.47240 * 210.00234 * 7 6 5
26 26 H 1.08999 * 109.46861 * 329.99854 * 7 6 5
27 27 H 0.96994 * 120.00491 * 179.97438 * 13 12 10
28 28 H 1.08002 * 120.00332 * 359.97438 * 18 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1983 1.1973 0.0000
4 6 3.5804 1.1972 -0.0064
5 6 4.2717 -0.0001 -0.0015
6 6 3.5806 -1.1971 0.0043
7 6 4.3340 -2.5022 0.0091
8 16 4.6380 -3.0185 1.7213
9 8 3.4148 -3.4287 2.3166
10 6 5.5138 -4.5352 1.5283
11 1 5.7283 -4.9129 0.5395
12 6 5.9253 -5.2399 2.6396
13 7 5.6637 -4.7804 3.8437
14 14 6.8531 -6.8483 2.4350
15 1 8.3115 -6.5744 2.3758
16 1 6.5629 -7.7374 3.5884
17 1 6.4227 -7.5116 1.1780
18 6 2.1980 -1.1970 0.0048
19 1 -0.3633 0.0042 1.0277
20 1 -0.3634 0.8879 -0.5174
21 1 -0.3634 -0.8920 -0.5102
22 1 1.6583 2.1326 0.0007
23 1 4.1205 2.1325 -0.0105
24 1 5.3517 -0.0002 -0.0018
25 1 3.7444 -3.2640 -0.5009
26 1 5.2859 -2.3741 -0.5063
27 1 5.9529 -5.2763 4.6256
28 1 1.6580 -2.1323 0.0090
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000082787930.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:02:33
Heat of formation + Delta-G solvation = -40.165272 kcal
Electronic energy + Delta-G solvation = -12683.856730 eV
Core-core repulsion = 10404.369898 eV
Total energy + Delta-G solvation = -2279.486832 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 224.061 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-38.93686 -33.62549 -33.07543 -32.76362 -31.47727 -26.93949 -26.30368 -25.62385
-21.71397 -20.30025 -17.92715 -16.05515 -15.43225 -15.12167 -14.98713 -14.47592
-13.74461 -13.34742 -13.05502 -12.80210 -12.50430 -12.34033 -11.94329 -11.61747
-11.42682 -11.17000 -10.84645 -10.69180 -10.60800 -10.44404 -10.14543 -9.11095
-8.73928 -8.33386 -7.86176 -6.81496 -6.31448 -4.81696 1.74835 1.79967
3.09904 3.17663 3.22508 3.60083 4.13135 4.30434 4.85393 5.11245
5.14316 5.22771 5.43514 5.51739 5.67014 5.73293 5.78000 5.95753
6.01651 6.04276 6.32370 6.39597 6.56715 6.70699 6.85301 6.95970
7.15806 7.45091 7.46559 8.18191 9.08001 10.46699
Molecular weight = 224.06amu
Principal moments of inertia in cm(-1)
A = 0.056655 B = 0.006760 C = 0.006504
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 494.100020 B = 4141.219358 C = 4303.828178
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.112 4.112
2 C -0.086 4.086
3 C -0.142 4.142
4 C -0.115 4.115
5 C -0.132 4.132
6 C -0.029 4.029
7 C -0.450 4.450
8 S 1.352 4.648
9 O -0.897 6.897
10 C -0.828 4.828
11 H 0.079 0.921
12 C 0.120 3.880
13 N -0.855 5.855
14 Si 0.906 3.094
15 H -0.268 1.268
16 H -0.279 1.279
17 H -0.269 1.269
18 C -0.122 4.122
19 H 0.068 0.932
20 H 0.061 0.939
21 H 0.062 0.938
22 H 0.114 0.886
23 H 0.118 0.882
24 H 0.127 0.873
25 H 0.076 0.924
26 H 0.105 0.895
27 H 0.281 0.719
28 H 0.116 0.884
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.185 10.503 -6.031 12.169
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C -0.086 4.086
3 C -0.161 4.161
4 C -0.133 4.133
5 C -0.151 4.151
6 C -0.030 4.030
7 C -0.577 4.577
8 S 1.549 4.451
9 O -0.892 6.892
10 C -0.969 4.969
11 H 0.098 0.902
12 C -0.094 4.094
13 N -0.488 5.488
14 Si 0.731 3.269
15 H -0.193 1.193
16 H -0.205 1.205
17 H -0.194 1.194
18 C -0.141 4.141
19 H 0.087 0.913
20 H 0.080 0.920
21 H 0.081 0.919
22 H 0.132 0.868
23 H 0.136 0.864
24 H 0.145 0.855
25 H 0.095 0.905
26 H 0.123 0.877
27 H 0.091 0.909
28 H 0.134 0.866
Dipole moment (debyes) X Y Z Total
from point charges -1.488 10.949 -5.049 12.149
hybrid contribution -0.527 -2.729 -1.257 3.050
sum -2.015 8.220 -6.306 10.555
Atomic orbital electron populations
1.20761 0.91759 1.02133 1.02195 1.19837 0.95719 0.93213 0.99868
1.20854 0.94366 0.96901 1.03963 1.21036 0.94146 0.97717 1.00418
1.21052 1.00093 0.91623 1.02371 1.19435 0.93181 0.94244 0.96147
1.27344 1.03690 0.98252 1.28452 1.69460 0.93320 1.02529 0.79813
1.92807 1.46663 1.85000 1.64711 1.27534 1.46222 1.25422 0.97717
0.90238 1.24762 0.92921 0.97758 0.93930 1.69893 1.41131 1.39417
0.98342 0.86391 0.79968 0.82010 0.78483 1.19346 1.20469 1.19385
1.20988 0.94037 0.97500 1.01576 0.91286 0.91959 0.91865 0.86776
0.86353 0.85533 0.90543 0.87664 0.90926 0.86583
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.44 10.01 36.01 0.36 -1.08 15
2 C -0.09 -1.39 5.88 -104.62 -0.62 -2.00 15
3 C -0.14 -2.04 9.70 -39.58 -0.38 -2.42 15
4 C -0.12 -1.62 10.05 -39.58 -0.40 -2.02 15
5 C -0.13 -2.09 9.70 -39.58 -0.38 -2.48 15
6 C -0.03 -0.55 5.14 -104.62 -0.54 -1.08 15
7 C -0.45 -9.23 6.01 36.01 0.22 -9.01 15
8 S 1.35 33.52 12.96 -107.50 -1.39 32.12 15
9 O -0.90 -27.80 17.82 -35.23 -0.63 -28.43 15
10 C -0.83 -22.78 9.39 30.60 0.29 -22.50 15
11 H 0.08 2.11 7.81 -52.49 -0.41 1.70 15
12 C 0.12 3.31 5.46 -17.82 -0.10 3.22 15
13 N -0.85 -24.47 13.15 55.43 0.73 -23.74 15
14 Si 0.91 20.78 29.54 -169.99 -5.02 15.76 15
15 H -0.27 -5.78 7.11 56.52 0.40 -5.38 15
16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15
17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15
18 C -0.12 -2.32 9.36 -39.58 -0.37 -2.69 15
19 H 0.07 0.86 8.14 -51.93 -0.42 0.44 15
20 H 0.06 0.66 8.09 -51.93 -0.42 0.24 15
21 H 0.06 0.79 8.08 -51.93 -0.42 0.37 15
22 H 0.11 1.31 8.06 -52.49 -0.42 0.89 15
23 H 0.12 1.28 8.06 -52.49 -0.42 0.86 15
24 H 0.13 1.67 8.06 -52.49 -0.42 1.24 15
25 H 0.08 1.67 8.09 -51.92 -0.42 1.25 15
26 H 0.10 1.87 8.09 -51.92 -0.42 1.45 15
27 H 0.28 7.37 8.31 -40.82 -0.34 7.03 15
28 H 0.12 2.31 8.06 -52.49 -0.42 1.89 15
LS Contribution 264.32 15.07 3.98 3.98
Total: -1.00 -34.51 264.32 -7.59 -42.10
By element:
Atomic # 1 Polarization: 3.59 SS G_CDS: -3.34 Total: 0.25 kcal
Atomic # 6 Polarization: -40.13 SS G_CDS: -1.92 Total: -42.05 kcal
Atomic # 7 Polarization: -24.47 SS G_CDS: 0.73 Total: -23.74 kcal
Atomic # 8 Polarization: -27.80 SS G_CDS: -0.63 Total: -28.43 kcal
Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal
Atomic # 16 Polarization: 33.52 SS G_CDS: -1.39 Total: 32.12 kcal
Total LS contribution 3.98 Total: 3.98 kcal
Total: -34.51 -7.59 -42.10 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000082787930.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.934 kcal
(2) G-P(sol) polarization free energy of solvation -34.509 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.575 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.100 kcal
(6) G-S(sol) free energy of system = (1) + (5) -40.165 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds