Wall clock time and date at job start Mon Mar 30 2020 03:02:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 C 1.38259 * 120.00222 * 2 1
4 4 C 1.38211 * 119.99788 * 180.30553 * 3 2 1
5 5 C 1.38256 * 120.00062 * 359.45940 * 4 3 2
6 6 C 1.38214 * 120.00160 * 0.26318 * 5 4 3
7 7 C 1.50700 * 120.00249 * 179.97438 * 6 5 4
8 8 S 1.81402 * 109.46841 * 90.00044 * 7 6 5
9 9 O 1.42095 * 109.47130 * 70.94737 * 8 7 6
10 10 C 1.76199 * 102.99868 * 180.02562 * 8 7 6
11 11 H 1.08000 * 119.99956 * 359.97438 * 10 8 7
12 12 C 1.37871 * 120.00095 * 179.97438 * 10 8 7
13 13 N 1.31514 * 120.00329 * 0.02562 * 12 10 8
14 14 Si 1.86802 * 120.00016 * 179.97438 * 12 10 8
15 15 H 1.48501 * 109.47204 * 90.00072 * 14 12 10
16 16 H 1.48499 * 109.47248 * 210.00230 * 14 12 10
17 17 H 1.48504 * 109.47249 * 330.00222 * 14 12 10
18 18 C 1.38212 * 119.99667 * 179.76960 * 2 1 3
19 19 H 1.09000 * 109.46767 * 270.23640 * 1 2 3
20 20 H 1.09004 * 109.47240 * 30.23147 * 1 2 3
21 21 H 1.08995 * 109.47480 * 150.23308 * 1 2 3
22 22 H 1.07998 * 119.99812 * 0.04290 * 3 2 1
23 23 H 1.08002 * 120.00200 * 179.74545 * 4 3 2
24 24 H 1.07999 * 120.00077 * 180.28382 * 5 4 3
25 25 H 1.08999 * 109.47240 * 210.00234 * 7 6 5
26 26 H 1.08999 * 109.46861 * 329.99854 * 7 6 5
27 27 H 0.96994 * 120.00491 * 179.97438 * 13 12 10
28 28 H 1.08002 * 120.00332 * 359.97438 * 18 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1983 1.1973 0.0000
4 6 3.5804 1.1972 -0.0064
5 6 4.2717 -0.0001 -0.0015
6 6 3.5806 -1.1971 0.0043
7 6 4.3340 -2.5022 0.0091
8 16 4.6380 -3.0185 1.7213
9 8 3.4148 -3.4287 2.3166
10 6 5.5138 -4.5352 1.5283
11 1 5.7283 -4.9129 0.5395
12 6 5.9253 -5.2399 2.6396
13 7 5.6637 -4.7804 3.8437
14 14 6.8531 -6.8483 2.4350
15 1 8.3115 -6.5744 2.3758
16 1 6.5629 -7.7374 3.5884
17 1 6.4227 -7.5116 1.1780
18 6 2.1980 -1.1970 0.0048
19 1 -0.3633 0.0042 1.0277
20 1 -0.3634 0.8879 -0.5174
21 1 -0.3634 -0.8920 -0.5102
22 1 1.6583 2.1326 0.0007
23 1 4.1205 2.1325 -0.0105
24 1 5.3517 -0.0002 -0.0018
25 1 3.7444 -3.2640 -0.5009
26 1 5.2859 -2.3741 -0.5063
27 1 5.9529 -5.2763 4.6256
28 1 1.6580 -2.1323 0.0090
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000082787930.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:02:33
Heat of formation + Delta-G solvation = -63.745705 kcal
Electronic energy + Delta-G solvation = -12684.879255 eV
Core-core repulsion = 10404.369898 eV
Total energy + Delta-G solvation = -2280.509356 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 224.061 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-40.18539 -35.82963 -34.93383 -34.30427 -32.72370 -28.43823 -27.86136 -27.34265
-22.96671 -21.64290 -19.93362 -17.53579 -17.28476 -17.01055 -16.35169 -15.80502
-15.46755 -14.93679 -14.51675 -14.23752 -14.06650 -13.72931 -13.46122 -13.09960
-13.00126 -12.92244 -12.74291 -12.41355 -12.13067 -11.88291 -11.76431 -11.10834
-10.63069 -9.65047 -9.42328 -8.79134 -8.38459 -6.97820 0.45427 0.53799
1.28419 1.33604 1.44638 1.78788 2.25914 2.75594 2.99329 3.27787
3.82228 3.91608 4.04990 4.16953 4.34175 4.49778 4.53841 4.71108
4.77872 4.90103 4.92619 4.99231 5.24861 5.35559 5.36501 5.64909
5.73020 5.81671 6.05223 6.23073 6.95901 8.41323
Molecular weight = 224.06amu
Principal moments of inertia in cm(-1)
A = 0.056655 B = 0.006760 C = 0.006504
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 494.100020 B = 4141.219358 C = 4303.828178
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.112 4.112
2 C -0.097 4.097
3 C -0.135 4.135
4 C -0.108 4.108
5 C -0.133 4.133
6 C -0.063 4.063
7 C -0.427 4.427
8 S 1.370 4.630
9 O -0.971 6.971
10 C -0.858 4.858
11 H 0.080 0.920
12 C 0.065 3.935
13 N -0.889 5.889
14 Si 0.973 3.027
15 H -0.240 1.240
16 H -0.275 1.275
17 H -0.274 1.274
18 C -0.157 4.157
19 H 0.071 0.929
20 H 0.093 0.907
21 H 0.057 0.943
22 H 0.152 0.848
23 H 0.162 0.838
24 H 0.154 0.846
25 H 0.052 0.948
26 H 0.136 0.864
27 H 0.287 0.713
28 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.117 12.494 -7.002 14.322
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C -0.097 4.097
3 C -0.153 4.153
4 C -0.125 4.125
5 C -0.152 4.152
6 C -0.064 4.064
7 C -0.560 4.560
8 S 1.573 4.427
9 O -0.966 6.966
10 C -0.998 4.998
11 H 0.098 0.902
12 C -0.145 4.145
13 N -0.523 5.523
14 Si 0.794 3.206
15 H -0.163 1.163
16 H -0.200 1.200
17 H -0.198 1.198
18 C -0.176 4.176
19 H 0.089 0.911
20 H 0.112 0.888
21 H 0.076 0.924
22 H 0.170 0.830
23 H 0.180 0.820
24 H 0.172 0.828
25 H 0.071 0.929
26 H 0.154 0.846
27 H 0.097 0.903
28 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges -0.408 12.931 -5.979 14.252
hybrid contribution -0.917 -3.178 -1.095 3.484
sum -1.324 9.753 -7.074 12.121
Atomic orbital electron populations
1.20824 0.89866 1.03434 1.02714 1.20206 0.97391 0.92838 0.99294
1.21368 0.94941 0.97468 1.01522 1.21563 0.94326 0.98628 0.98016
1.21417 1.01635 0.91000 1.01180 1.19431 0.93241 0.94400 0.99334
1.26980 1.05381 0.99059 1.24539 1.68254 0.91421 1.01281 0.81759
1.92707 1.49346 1.85614 1.68912 1.27887 1.47040 1.26849 0.98068
0.90153 1.25767 0.93715 1.01508 0.93503 1.69978 1.42055 1.40992
0.99225 0.85383 0.80007 0.77146 0.78099 1.16335 1.19963 1.19830
1.21030 0.94610 0.97803 1.04189 0.91082 0.88850 0.92418 0.82987
0.82042 0.82793 0.92881 0.84572 0.90285 0.89666
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -2.73 10.01 71.24 0.71 -2.02 15
2 C -0.10 -3.01 5.88 -19.87 -0.12 -3.12 15
3 C -0.13 -3.35 9.70 22.27 0.22 -3.13 15
4 C -0.11 -2.57 10.05 22.27 0.22 -2.35 15
5 C -0.13 -3.88 9.70 22.27 0.22 -3.66 15
6 C -0.06 -2.38 5.14 -19.86 -0.10 -2.48 15
7 C -0.43 -17.87 6.01 71.24 0.43 -17.44 15
8 S 1.37 70.37 12.96 -56.49 -0.73 69.64 15
9 O -0.97 -63.38 17.82 -148.98 -2.65 -66.04 15
10 C -0.86 -48.23 9.39 67.73 0.64 -47.60 15
11 H 0.08 4.33 7.81 -2.91 -0.02 4.31 15
12 C 0.07 3.64 5.46 84.65 0.46 4.10 15
13 N -0.89 -51.88 13.15 21.44 0.28 -51.60 15
14 Si 0.97 42.48 29.54 68.60 2.03 44.51 15
15 H -0.24 -9.34 7.11 99.48 0.71 -8.63 15
16 H -0.27 -11.68 7.11 99.48 0.71 -10.98 15
17 H -0.27 -12.02 7.11 99.48 0.71 -11.31 15
18 C -0.16 -6.14 9.36 22.27 0.21 -5.94 15
19 H 0.07 1.70 8.14 -2.39 -0.02 1.68 15
20 H 0.09 1.67 8.09 -2.38 -0.02 1.65 15
21 H 0.06 1.44 8.08 -2.39 -0.02 1.42 15
22 H 0.15 2.64 8.06 -2.91 -0.02 2.62 15
23 H 0.16 2.50 8.06 -2.91 -0.02 2.47 15
24 H 0.15 3.51 8.06 -2.91 -0.02 3.49 15
25 H 0.05 2.43 8.09 -2.39 -0.02 2.41 15
26 H 0.14 4.72 8.09 -2.39 -0.02 4.70 15
27 H 0.29 15.31 8.31 -92.71 -0.77 14.54 15
28 H 0.09 3.72 8.06 -2.91 -0.02 3.69 15
Total: -1.00 -78.01 264.32 2.94 -75.07
By element:
Atomic # 1 Polarization: 10.92 SS G_CDS: 1.14 Total: 12.06 kcal
Atomic # 6 Polarization: -86.52 SS G_CDS: 2.89 Total: -83.64 kcal
Atomic # 7 Polarization: -51.88 SS G_CDS: 0.28 Total: -51.60 kcal
Atomic # 8 Polarization: -63.38 SS G_CDS: -2.65 Total: -66.04 kcal
Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal
Atomic # 16 Polarization: 70.37 SS G_CDS: -0.73 Total: 69.64 kcal
Total: -78.01 2.94 -75.07 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000082787930.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.322 kcal
(2) G-P(sol) polarization free energy of solvation -78.012 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.689 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.944 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.068 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.746 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds