Wall clock time and date at job start Mon Mar 30 2020 03:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38255 * 119.99507 * 2 1 4 4 C 1.38217 * 119.99740 * 180.02562 * 3 2 1 5 5 C 1.38256 * 120.00087 * 359.94716 * 4 3 2 6 6 C 1.38215 * 119.99734 * 0.05278 * 5 4 3 7 7 C 1.38212 * 120.00209 * 179.97438 * 2 1 3 8 8 C 1.50696 * 120.00198 * 359.97438 * 7 2 1 9 9 S 1.81404 * 109.47280 * 270.02641 * 8 7 2 10 10 O 1.42099 * 109.47000 * 70.94245 * 9 8 7 11 11 C 1.76199 * 102.99983 * 179.97438 * 9 8 7 12 12 H 1.07995 * 119.99984 * 0.02562 * 11 9 8 13 13 C 1.37877 * 119.99564 * 180.02562 * 11 9 8 14 14 N 1.31507 * 120.00325 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 119.99675 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47248 * 89.99817 * 15 13 11 17 17 H 1.48504 * 109.47200 * 209.99660 * 15 13 11 18 18 H 1.48499 * 109.47072 * 329.99675 * 15 13 11 19 19 H 1.09006 * 109.46626 * 270.01958 * 1 2 3 20 20 H 1.08997 * 109.47767 * 30.01779 * 1 2 3 21 21 H 1.08997 * 109.46925 * 150.02479 * 1 2 3 22 22 H 1.07997 * 120.00435 * 359.97438 * 3 2 1 23 23 H 1.08001 * 119.99701 * 179.97438 * 4 3 2 24 24 H 1.07995 * 120.00047 * 180.32212 * 5 4 3 25 25 H 1.08000 * 119.99306 * 179.97438 * 6 5 4 26 26 H 1.09005 * 109.46873 * 30.02029 * 8 7 2 27 27 H 1.08998 * 109.47033 * 150.02519 * 8 7 2 28 28 H 0.97006 * 120.00108 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 0.0000 6 6 3.5807 -1.1968 0.0000 7 6 2.1981 -1.1969 0.0005 8 6 1.4448 -2.5020 0.0017 9 16 1.1424 -3.0242 1.7124 10 8 0.1730 -2.1702 2.3040 11 6 0.2665 -4.5403 1.5152 12 1 0.0510 -4.9146 0.5253 13 6 -0.1439 -5.2487 2.6246 14 7 0.1189 -4.7931 3.8299 15 14 -1.0719 -6.8563 2.4155 16 1 -0.1053 -7.9825 2.3614 17 1 -1.9929 -7.0493 3.5643 18 1 -1.8551 -6.8153 1.1545 19 1 -0.3633 0.0004 1.0278 20 1 -0.3634 0.8898 -0.5141 21 1 -0.3633 -0.8902 -0.5134 22 1 1.6582 2.1327 -0.0004 23 1 4.1203 2.1328 -0.0010 24 1 5.3517 0.0002 0.0049 25 1 4.1208 -2.1321 0.0001 26 1 0.4923 -2.3722 -0.5122 27 1 2.0339 -3.2621 -0.5114 28 1 -0.1695 -5.2918 4.6105 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082787945.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:36 Heat of formation + Delta-G solvation = -36.150338 kcal Electronic energy + Delta-G solvation = -12940.134915 eV Core-core repulsion = 10660.822184 eV Total energy + Delta-G solvation = -2279.312732 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.97510 -33.62514 -32.91820 -32.64657 -31.56058 -27.03545 -26.08315 -25.49905 -21.60817 -20.33301 -17.94464 -15.91986 -15.41883 -15.16823 -15.08059 -14.49580 -13.85572 -13.16950 -12.88439 -12.65614 -12.31819 -12.18941 -11.66211 -11.62462 -11.48032 -11.14782 -10.81146 -10.67579 -10.53288 -10.32490 -10.09366 -9.11146 -8.73713 -8.30681 -7.79498 -6.79429 -6.30122 -4.80644 1.78959 1.80604 3.10046 3.17813 3.22501 3.62123 4.14116 4.32489 4.86228 5.16143 5.25309 5.32260 5.42276 5.56224 5.65487 5.82590 5.98456 6.11368 6.16914 6.28907 6.38774 6.53147 6.69879 6.79921 6.87918 6.92921 7.22295 7.46974 7.47792 8.18791 9.08800 10.47095 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.054499 B = 0.007518 C = 0.007250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.652190 B = 3723.473835 C = 3860.889978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.084 4.084 3 C -0.121 4.121 4 C -0.138 4.138 5 C -0.126 4.126 6 C -0.123 4.123 7 C -0.036 4.036 8 C -0.452 4.452 9 S 1.351 4.649 10 O -0.893 6.893 11 C -0.828 4.828 12 H 0.078 0.922 13 C 0.121 3.879 14 N -0.855 5.855 15 Si 0.905 3.095 16 H -0.269 1.269 17 H -0.280 1.280 18 H -0.270 1.270 19 H 0.086 0.914 20 H 0.053 0.947 21 H 0.064 0.936 22 H 0.114 0.886 23 H 0.114 0.886 24 H 0.117 0.883 25 H 0.126 0.874 26 H 0.081 0.919 27 H 0.103 0.897 28 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.784 5.247 -5.886 11.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.085 4.085 3 C -0.139 4.139 4 C -0.157 4.157 5 C -0.145 4.145 6 C -0.142 4.142 7 C -0.037 4.037 8 C -0.580 4.580 9 S 1.548 4.452 10 O -0.888 6.888 11 C -0.969 4.969 12 H 0.097 0.903 13 C -0.093 4.093 14 N -0.488 5.488 15 Si 0.730 3.270 16 H -0.194 1.194 17 H -0.205 1.205 18 H -0.194 1.194 19 H 0.105 0.895 20 H 0.072 0.928 21 H 0.083 0.917 22 H 0.132 0.868 23 H 0.132 0.868 24 H 0.135 0.865 25 H 0.144 0.856 26 H 0.100 0.900 27 H 0.121 0.879 28 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.015 5.726 -4.902 11.003 hybrid contribution -2.551 -0.860 -1.290 2.985 sum 5.465 4.866 -6.191 9.585 Atomic orbital electron populations 1.20893 0.91514 1.01408 1.03699 1.19824 0.96210 0.92750 0.99721 1.20918 0.94258 0.97068 1.01647 1.20961 0.94146 0.97737 1.02820 1.21019 0.99331 0.92587 1.01516 1.21046 0.93404 0.98236 1.01524 1.19310 0.93366 0.93579 0.97436 1.27426 1.03361 0.98770 1.28410 1.69491 1.12249 0.83592 0.79904 1.92799 1.65403 1.65814 1.64749 1.27544 1.50539 1.21121 0.97655 0.90333 1.24746 0.92608 0.97990 0.93945 1.69893 1.42252 1.38320 0.98335 0.86414 0.79892 0.82204 0.78474 1.19389 1.20499 1.19403 0.89541 0.92758 0.91731 0.86763 0.86803 0.86489 0.85562 0.90044 0.87889 0.90971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.24 9.42 36.01 0.34 -1.90 15 2 C -0.08 -1.57 5.88 -104.62 -0.62 -2.19 15 3 C -0.12 -1.93 9.70 -39.58 -0.38 -2.32 15 4 C -0.14 -1.97 10.05 -39.58 -0.40 -2.37 15 5 C -0.13 -1.79 10.05 -39.58 -0.40 -2.18 15 6 C -0.12 -1.95 9.70 -39.58 -0.38 -2.33 15 7 C -0.04 -0.67 5.14 -104.63 -0.54 -1.21 15 8 C -0.45 -9.15 5.60 36.00 0.20 -8.95 15 9 S 1.35 32.87 12.96 -107.50 -1.39 31.48 15 10 O -0.89 -26.60 17.04 -35.23 -0.60 -27.20 15 11 C -0.83 -22.51 9.38 30.60 0.29 -22.22 15 12 H 0.08 2.07 7.81 -52.49 -0.41 1.66 15 13 C 0.12 3.31 5.46 -17.82 -0.10 3.21 15 14 N -0.86 -24.28 13.14 55.43 0.73 -23.55 15 15 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 15 16 H -0.27 -5.79 7.11 56.52 0.40 -5.38 15 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 15 19 H 0.09 1.85 7.55 -51.93 -0.39 1.46 15 20 H 0.05 0.85 8.09 -51.93 -0.42 0.43 15 21 H 0.06 1.27 5.95 -51.93 -0.31 0.96 15 22 H 0.11 1.57 8.06 -52.49 -0.42 1.15 15 23 H 0.11 1.29 8.06 -52.49 -0.42 0.87 15 24 H 0.12 1.29 8.06 -52.49 -0.42 0.86 15 25 H 0.13 1.67 8.06 -52.49 -0.42 1.25 15 26 H 0.08 1.75 5.95 -51.92 -0.31 1.44 15 27 H 0.10 1.82 8.09 -51.93 -0.42 1.40 15 28 H 0.28 7.33 8.31 -40.82 -0.34 6.99 15 LS Contribution 258.36 15.07 3.89 3.89 Total: -1.00 -33.35 258.36 -7.46 -40.81 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -3.09 Total: 1.37 kcal Atomic # 6 Polarization: -40.47 SS G_CDS: -1.99 Total: -42.46 kcal Atomic # 7 Polarization: -24.28 SS G_CDS: 0.73 Total: -23.55 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -0.60 Total: -27.20 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 32.87 SS G_CDS: -1.39 Total: 31.48 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -33.35 -7.46 -40.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082787945.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.660 kcal (2) G-P(sol) polarization free energy of solvation -33.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds