Wall clock time and date at job start Mon Mar 30 2020 03:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38255 * 119.99507 * 2 1 4 4 C 1.38217 * 119.99740 * 180.02562 * 3 2 1 5 5 C 1.38256 * 120.00087 * 359.94716 * 4 3 2 6 6 C 1.38215 * 119.99734 * 0.05278 * 5 4 3 7 7 C 1.38212 * 120.00209 * 179.97438 * 2 1 3 8 8 C 1.50696 * 120.00198 * 359.97438 * 7 2 1 9 9 S 1.81404 * 109.47280 * 270.02641 * 8 7 2 10 10 O 1.42099 * 109.47000 * 70.94245 * 9 8 7 11 11 C 1.76199 * 102.99983 * 179.97438 * 9 8 7 12 12 H 1.07995 * 119.99984 * 0.02562 * 11 9 8 13 13 C 1.37877 * 119.99564 * 180.02562 * 11 9 8 14 14 N 1.31507 * 120.00325 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 119.99675 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47248 * 89.99817 * 15 13 11 17 17 H 1.48504 * 109.47200 * 209.99660 * 15 13 11 18 18 H 1.48499 * 109.47072 * 329.99675 * 15 13 11 19 19 H 1.09006 * 109.46626 * 270.01958 * 1 2 3 20 20 H 1.08997 * 109.47767 * 30.01779 * 1 2 3 21 21 H 1.08997 * 109.46925 * 150.02479 * 1 2 3 22 22 H 1.07997 * 120.00435 * 359.97438 * 3 2 1 23 23 H 1.08001 * 119.99701 * 179.97438 * 4 3 2 24 24 H 1.07995 * 120.00047 * 180.32212 * 5 4 3 25 25 H 1.08000 * 119.99306 * 179.97438 * 6 5 4 26 26 H 1.09005 * 109.46873 * 30.02029 * 8 7 2 27 27 H 1.08998 * 109.47033 * 150.02519 * 8 7 2 28 28 H 0.97006 * 120.00108 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 0.0000 6 6 3.5807 -1.1968 0.0000 7 6 2.1981 -1.1969 0.0005 8 6 1.4448 -2.5020 0.0017 9 16 1.1424 -3.0242 1.7124 10 8 0.1730 -2.1702 2.3040 11 6 0.2665 -4.5403 1.5152 12 1 0.0510 -4.9146 0.5253 13 6 -0.1439 -5.2487 2.6246 14 7 0.1189 -4.7931 3.8299 15 14 -1.0719 -6.8563 2.4155 16 1 -0.1053 -7.9825 2.3614 17 1 -1.9929 -7.0493 3.5643 18 1 -1.8551 -6.8153 1.1545 19 1 -0.3633 0.0004 1.0278 20 1 -0.3634 0.8898 -0.5141 21 1 -0.3633 -0.8902 -0.5134 22 1 1.6582 2.1327 -0.0004 23 1 4.1203 2.1328 -0.0010 24 1 5.3517 0.0002 0.0049 25 1 4.1208 -2.1321 0.0001 26 1 0.4923 -2.3722 -0.5122 27 1 2.0339 -3.2621 -0.5114 28 1 -0.1695 -5.2918 4.6105 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082787945.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:36 Heat of formation + Delta-G solvation = -58.518034 kcal Electronic energy + Delta-G solvation = -12941.104851 eV Core-core repulsion = 10660.822184 eV Total energy + Delta-G solvation = -2280.282668 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.23678 -35.73990 -34.89792 -34.08604 -32.89528 -28.51135 -27.92301 -27.11093 -22.88224 -21.66533 -19.92504 -17.46097 -17.18513 -16.96501 -16.54380 -15.78229 -15.57552 -14.97697 -14.46395 -13.95485 -13.88949 -13.70982 -13.45152 -13.18209 -12.97865 -12.91062 -12.83018 -12.42203 -12.09407 -11.74282 -11.66355 -11.08856 -10.59149 -9.57651 -9.41121 -8.73107 -8.33388 -6.93691 0.48918 0.58035 1.29256 1.33739 1.44676 1.83477 2.28233 2.78341 3.03140 3.32289 3.87932 3.96690 4.04448 4.19353 4.34679 4.43023 4.54534 4.65574 4.85524 4.89925 4.95236 5.00461 5.31475 5.36486 5.38841 5.67817 5.71070 5.89018 6.07900 6.25712 6.99076 8.43422 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.054499 B = 0.007518 C = 0.007250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.652190 B = 3723.473835 C = 3860.889978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.115 4.115 3 C -0.129 4.129 4 C -0.129 4.129 5 C -0.121 4.121 6 C -0.125 4.125 7 C -0.070 4.070 8 C -0.431 4.431 9 S 1.367 4.633 10 O -0.958 6.958 11 C -0.857 4.857 12 H 0.077 0.923 13 C 0.067 3.933 14 N -0.889 5.889 15 Si 0.969 3.031 16 H -0.242 1.242 17 H -0.276 1.276 18 H -0.274 1.274 19 H 0.050 0.950 20 H 0.083 0.917 21 H 0.045 0.955 22 H 0.133 0.867 23 H 0.152 0.848 24 H 0.158 0.842 25 H 0.151 0.849 26 H 0.062 0.938 27 H 0.130 0.870 28 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.850 5.464 -6.975 13.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.116 4.116 3 C -0.147 4.147 4 C -0.148 4.148 5 C -0.138 4.138 6 C -0.144 4.144 7 C -0.071 4.071 8 C -0.563 4.563 9 S 1.569 4.431 10 O -0.953 6.953 11 C -0.997 4.997 12 H 0.096 0.904 13 C -0.143 4.143 14 N -0.523 5.523 15 Si 0.790 3.210 16 H -0.166 1.166 17 H -0.201 1.201 18 H -0.199 1.199 19 H 0.069 0.931 20 H 0.102 0.898 21 H 0.064 0.936 22 H 0.151 0.849 23 H 0.169 0.831 24 H 0.175 0.825 25 H 0.169 0.831 26 H 0.080 0.920 27 H 0.148 0.852 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.080 5.922 -5.952 13.119 hybrid contribution -3.065 -0.786 -1.088 3.346 sum 7.015 5.135 -7.040 11.187 Atomic orbital electron populations 1.20788 0.92820 1.01923 1.01482 1.19994 0.95774 0.94194 1.01666 1.21215 0.95518 0.96735 1.01266 1.21467 0.93452 0.99597 1.00259 1.21520 1.01387 0.91624 0.99313 1.21409 0.92165 1.00475 1.00365 1.19342 0.94834 0.92429 1.00539 1.27050 1.03479 1.01119 1.24635 1.68361 1.10918 0.81883 0.81914 1.92717 1.66705 1.67257 1.68603 1.27916 1.51294 1.22621 0.97857 0.90416 1.25706 0.93389 1.01625 0.93570 1.69977 1.43202 1.39926 0.99173 0.85438 0.78935 0.78539 0.78060 1.16564 1.20054 1.19857 0.93139 0.89846 0.93617 0.84865 0.83071 0.82475 0.83082 0.91960 0.85223 0.90414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.47 9.42 71.24 0.67 -3.80 15 2 C -0.12 -4.28 5.88 -19.87 -0.12 -4.39 15 3 C -0.13 -3.86 9.70 22.27 0.22 -3.64 15 4 C -0.13 -3.15 10.05 22.27 0.22 -2.93 15 5 C -0.12 -2.87 10.05 22.27 0.22 -2.65 15 6 C -0.13 -3.62 9.70 22.27 0.22 -3.40 15 7 C -0.07 -2.59 5.14 -19.87 -0.10 -2.69 15 8 C -0.43 -17.62 5.60 71.23 0.40 -17.22 15 9 S 1.37 68.69 12.96 -56.49 -0.73 67.96 15 10 O -0.96 -59.96 17.04 -148.98 -2.54 -62.50 15 11 C -0.86 -47.61 9.38 67.73 0.64 -46.97 15 12 H 0.08 4.16 7.81 -2.91 -0.02 4.14 15 13 C 0.07 3.72 5.46 84.66 0.46 4.18 15 14 N -0.89 -51.52 13.14 21.45 0.28 -51.24 15 15 Si 0.97 42.38 29.54 68.60 2.03 44.41 15 16 H -0.24 -9.50 7.11 99.48 0.71 -8.79 15 17 H -0.28 -11.76 7.11 99.48 0.71 -11.06 15 18 H -0.27 -12.04 7.11 99.48 0.71 -11.34 15 19 H 0.05 2.31 7.55 -2.38 -0.02 2.29 15 20 H 0.08 2.64 8.09 -2.39 -0.02 2.62 15 21 H 0.04 1.90 5.95 -2.39 -0.01 1.89 15 22 H 0.13 3.34 8.06 -2.91 -0.02 3.32 15 23 H 0.15 2.56 8.06 -2.91 -0.02 2.54 15 24 H 0.16 2.50 8.06 -2.91 -0.02 2.48 15 25 H 0.15 3.48 8.06 -2.91 -0.02 3.45 15 26 H 0.06 2.77 5.95 -2.39 -0.01 2.76 15 27 H 0.13 4.48 8.09 -2.39 -0.02 4.46 15 28 H 0.29 15.19 8.31 -92.70 -0.77 14.42 15 Total: -1.00 -74.71 258.36 3.02 -71.69 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 1.15 Total: 13.19 kcal Atomic # 6 Polarization: -86.34 SS G_CDS: 2.83 Total: -83.51 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: 0.28 Total: -51.24 kcal Atomic # 8 Polarization: -59.96 SS G_CDS: -2.54 Total: -62.50 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 16 Polarization: 68.69 SS G_CDS: -0.73 Total: 67.96 kcal Total: -74.71 3.02 -71.69 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082787945.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.174 kcal (2) G-P(sol) polarization free energy of solvation -74.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds