Wall clock time and date at job start Mon Mar 30 2020 03:02:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50704 * 1
3 3 C 1.38255 * 119.99507 * 2 1
4 4 C 1.38217 * 119.99740 * 180.02562 * 3 2 1
5 5 C 1.38256 * 120.00087 * 359.94716 * 4 3 2
6 6 C 1.38215 * 119.99734 * 0.05278 * 5 4 3
7 7 C 1.38212 * 120.00209 * 179.97438 * 2 1 3
8 8 C 1.50696 * 120.00198 * 359.97438 * 7 2 1
9 9 S 1.81404 * 109.47280 * 270.02641 * 8 7 2
10 10 O 1.42099 * 109.47000 * 70.94245 * 9 8 7
11 11 C 1.76199 * 102.99983 * 179.97438 * 9 8 7
12 12 H 1.07995 * 119.99984 * 0.02562 * 11 9 8
13 13 C 1.37877 * 119.99564 * 180.02562 * 11 9 8
14 14 N 1.31507 * 120.00325 * 359.97438 * 13 11 9
15 15 Si 1.86800 * 119.99675 * 180.02562 * 13 11 9
16 16 H 1.48505 * 109.47248 * 89.99817 * 15 13 11
17 17 H 1.48504 * 109.47200 * 209.99660 * 15 13 11
18 18 H 1.48499 * 109.47072 * 329.99675 * 15 13 11
19 19 H 1.09006 * 109.46626 * 270.01958 * 1 2 3
20 20 H 1.08997 * 109.47767 * 30.01779 * 1 2 3
21 21 H 1.08997 * 109.46925 * 150.02479 * 1 2 3
22 22 H 1.07997 * 120.00435 * 359.97438 * 3 2 1
23 23 H 1.08001 * 119.99701 * 179.97438 * 4 3 2
24 24 H 1.07995 * 120.00047 * 180.32212 * 5 4 3
25 25 H 1.08000 * 119.99306 * 179.97438 * 6 5 4
26 26 H 1.09005 * 109.46873 * 30.02029 * 8 7 2
27 27 H 1.08998 * 109.47033 * 150.02519 * 8 7 2
28 28 H 0.97006 * 120.00108 * 180.02562 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1982 1.1974 0.0000
4 6 3.5804 1.1974 -0.0005
5 6 4.2717 0.0001 0.0000
6 6 3.5807 -1.1968 0.0000
7 6 2.1981 -1.1969 0.0005
8 6 1.4448 -2.5020 0.0017
9 16 1.1424 -3.0242 1.7124
10 8 0.1730 -2.1702 2.3040
11 6 0.2665 -4.5403 1.5152
12 1 0.0510 -4.9146 0.5253
13 6 -0.1439 -5.2487 2.6246
14 7 0.1189 -4.7931 3.8299
15 14 -1.0719 -6.8563 2.4155
16 1 -0.1053 -7.9825 2.3614
17 1 -1.9929 -7.0493 3.5643
18 1 -1.8551 -6.8153 1.1545
19 1 -0.3633 0.0004 1.0278
20 1 -0.3634 0.8898 -0.5141
21 1 -0.3633 -0.8902 -0.5134
22 1 1.6582 2.1327 -0.0004
23 1 4.1203 2.1328 -0.0010
24 1 5.3517 0.0002 0.0049
25 1 4.1208 -2.1321 0.0001
26 1 0.4923 -2.3722 -0.5122
27 1 2.0339 -3.2621 -0.5114
28 1 -0.1695 -5.2918 4.6105
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000082787945.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:02:36
Heat of formation + Delta-G solvation = -58.518034 kcal
Electronic energy + Delta-G solvation = -12941.104851 eV
Core-core repulsion = 10660.822184 eV
Total energy + Delta-G solvation = -2280.282668 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 224.061 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-40.23678 -35.73990 -34.89792 -34.08604 -32.89528 -28.51135 -27.92301 -27.11093
-22.88224 -21.66533 -19.92504 -17.46097 -17.18513 -16.96501 -16.54380 -15.78229
-15.57552 -14.97697 -14.46395 -13.95485 -13.88949 -13.70982 -13.45152 -13.18209
-12.97865 -12.91062 -12.83018 -12.42203 -12.09407 -11.74282 -11.66355 -11.08856
-10.59149 -9.57651 -9.41121 -8.73107 -8.33388 -6.93691 0.48918 0.58035
1.29256 1.33739 1.44676 1.83477 2.28233 2.78341 3.03140 3.32289
3.87932 3.96690 4.04448 4.19353 4.34679 4.43023 4.54534 4.65574
4.85524 4.89925 4.95236 5.00461 5.31475 5.36486 5.38841 5.67817
5.71070 5.89018 6.07900 6.25712 6.99076 8.43422
Molecular weight = 224.06amu
Principal moments of inertia in cm(-1)
A = 0.054499 B = 0.007518 C = 0.007250
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 513.652190 B = 3723.473835 C = 3860.889978
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.114 4.114
2 C -0.115 4.115
3 C -0.129 4.129
4 C -0.129 4.129
5 C -0.121 4.121
6 C -0.125 4.125
7 C -0.070 4.070
8 C -0.431 4.431
9 S 1.367 4.633
10 O -0.958 6.958
11 C -0.857 4.857
12 H 0.077 0.923
13 C 0.067 3.933
14 N -0.889 5.889
15 Si 0.969 3.031
16 H -0.242 1.242
17 H -0.276 1.276
18 H -0.274 1.274
19 H 0.050 0.950
20 H 0.083 0.917
21 H 0.045 0.955
22 H 0.133 0.867
23 H 0.152 0.848
24 H 0.158 0.842
25 H 0.151 0.849
26 H 0.062 0.938
27 H 0.130 0.870
28 H 0.286 0.714
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.850 5.464 -6.975 13.249
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C -0.116 4.116
3 C -0.147 4.147
4 C -0.148 4.148
5 C -0.138 4.138
6 C -0.144 4.144
7 C -0.071 4.071
8 C -0.563 4.563
9 S 1.569 4.431
10 O -0.953 6.953
11 C -0.997 4.997
12 H 0.096 0.904
13 C -0.143 4.143
14 N -0.523 5.523
15 Si 0.790 3.210
16 H -0.166 1.166
17 H -0.201 1.201
18 H -0.199 1.199
19 H 0.069 0.931
20 H 0.102 0.898
21 H 0.064 0.936
22 H 0.151 0.849
23 H 0.169 0.831
24 H 0.175 0.825
25 H 0.169 0.831
26 H 0.080 0.920
27 H 0.148 0.852
28 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges 10.080 5.922 -5.952 13.119
hybrid contribution -3.065 -0.786 -1.088 3.346
sum 7.015 5.135 -7.040 11.187
Atomic orbital electron populations
1.20788 0.92820 1.01923 1.01482 1.19994 0.95774 0.94194 1.01666
1.21215 0.95518 0.96735 1.01266 1.21467 0.93452 0.99597 1.00259
1.21520 1.01387 0.91624 0.99313 1.21409 0.92165 1.00475 1.00365
1.19342 0.94834 0.92429 1.00539 1.27050 1.03479 1.01119 1.24635
1.68361 1.10918 0.81883 0.81914 1.92717 1.66705 1.67257 1.68603
1.27916 1.51294 1.22621 0.97857 0.90416 1.25706 0.93389 1.01625
0.93570 1.69977 1.43202 1.39926 0.99173 0.85438 0.78935 0.78539
0.78060 1.16564 1.20054 1.19857 0.93139 0.89846 0.93617 0.84865
0.83071 0.82475 0.83082 0.91960 0.85223 0.90414
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -4.47 9.42 71.24 0.67 -3.80 15
2 C -0.12 -4.28 5.88 -19.87 -0.12 -4.39 15
3 C -0.13 -3.86 9.70 22.27 0.22 -3.64 15
4 C -0.13 -3.15 10.05 22.27 0.22 -2.93 15
5 C -0.12 -2.87 10.05 22.27 0.22 -2.65 15
6 C -0.13 -3.62 9.70 22.27 0.22 -3.40 15
7 C -0.07 -2.59 5.14 -19.87 -0.10 -2.69 15
8 C -0.43 -17.62 5.60 71.23 0.40 -17.22 15
9 S 1.37 68.69 12.96 -56.49 -0.73 67.96 15
10 O -0.96 -59.96 17.04 -148.98 -2.54 -62.50 15
11 C -0.86 -47.61 9.38 67.73 0.64 -46.97 15
12 H 0.08 4.16 7.81 -2.91 -0.02 4.14 15
13 C 0.07 3.72 5.46 84.66 0.46 4.18 15
14 N -0.89 -51.52 13.14 21.45 0.28 -51.24 15
15 Si 0.97 42.38 29.54 68.60 2.03 44.41 15
16 H -0.24 -9.50 7.11 99.48 0.71 -8.79 15
17 H -0.28 -11.76 7.11 99.48 0.71 -11.06 15
18 H -0.27 -12.04 7.11 99.48 0.71 -11.34 15
19 H 0.05 2.31 7.55 -2.38 -0.02 2.29 15
20 H 0.08 2.64 8.09 -2.39 -0.02 2.62 15
21 H 0.04 1.90 5.95 -2.39 -0.01 1.89 15
22 H 0.13 3.34 8.06 -2.91 -0.02 3.32 15
23 H 0.15 2.56 8.06 -2.91 -0.02 2.54 15
24 H 0.16 2.50 8.06 -2.91 -0.02 2.48 15
25 H 0.15 3.48 8.06 -2.91 -0.02 3.45 15
26 H 0.06 2.77 5.95 -2.39 -0.01 2.76 15
27 H 0.13 4.48 8.09 -2.39 -0.02 4.46 15
28 H 0.29 15.19 8.31 -92.70 -0.77 14.42 15
Total: -1.00 -74.71 258.36 3.02 -71.69
By element:
Atomic # 1 Polarization: 12.04 SS G_CDS: 1.15 Total: 13.19 kcal
Atomic # 6 Polarization: -86.34 SS G_CDS: 2.83 Total: -83.51 kcal
Atomic # 7 Polarization: -51.52 SS G_CDS: 0.28 Total: -51.24 kcal
Atomic # 8 Polarization: -59.96 SS G_CDS: -2.54 Total: -62.50 kcal
Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal
Atomic # 16 Polarization: 68.69 SS G_CDS: -0.73 Total: 67.96 kcal
Total: -74.71 3.02 -71.69 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000082787945.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 13.174 kcal
(2) G-P(sol) polarization free energy of solvation -74.707 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.533 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.015 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.692 kcal
(6) G-S(sol) free energy of system = (1) + (5) -58.518 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds